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You searched for subject:(sequence alignment). Showing records 1 – 30 of 213 total matches.

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University of Saskatchewan

1. Islam, T M Rezwanul. CSA-X: Modularized Constrained Multiple Sequence Alignment.

Degree: 2015, University of Saskatchewan

 Imposing additional constraints on multiple sequence alignment (MSA) algorithms can often produce more biologically meaningful alignments. Hence, various constrained multiple sequence alignment (CMSA) algorithms have… (more)

Subjects/Keywords: Multiple Sequence Alignment; Constrained Multiple Sequence Alignment.

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APA (6th Edition):

Islam, T. M. R. (2015). CSA-X: Modularized Constrained Multiple Sequence Alignment. (Thesis). University of Saskatchewan. Retrieved from http://hdl.handle.net/10388/ETD-2015-10-2276

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Islam, T M Rezwanul. “CSA-X: Modularized Constrained Multiple Sequence Alignment.” 2015. Thesis, University of Saskatchewan. Accessed January 18, 2020. http://hdl.handle.net/10388/ETD-2015-10-2276.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Islam, T M Rezwanul. “CSA-X: Modularized Constrained Multiple Sequence Alignment.” 2015. Web. 18 Jan 2020.

Vancouver:

Islam TMR. CSA-X: Modularized Constrained Multiple Sequence Alignment. [Internet] [Thesis]. University of Saskatchewan; 2015. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/10388/ETD-2015-10-2276.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Islam TMR. CSA-X: Modularized Constrained Multiple Sequence Alignment. [Thesis]. University of Saskatchewan; 2015. Available from: http://hdl.handle.net/10388/ETD-2015-10-2276

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Hong Kong

2. Xie, Fangping. Improving the quality of large scale multiple sequence alignment.

Degree: M. Phil., 2016, University of Hong Kong

 Biological sequences have rapidly accumulated due to the development of sequencing technologies. For evolutionary biology, a fundamental question is to reconstruct the phylogenetic relationship of… (more)

Subjects/Keywords: Sequence alignment (Bioinformatics)

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APA (6th Edition):

Xie, F. (2016). Improving the quality of large scale multiple sequence alignment. (Masters Thesis). University of Hong Kong. Retrieved from http://hdl.handle.net/10722/241433

Chicago Manual of Style (16th Edition):

Xie, Fangping. “Improving the quality of large scale multiple sequence alignment.” 2016. Masters Thesis, University of Hong Kong. Accessed January 18, 2020. http://hdl.handle.net/10722/241433.

MLA Handbook (7th Edition):

Xie, Fangping. “Improving the quality of large scale multiple sequence alignment.” 2016. Web. 18 Jan 2020.

Vancouver:

Xie F. Improving the quality of large scale multiple sequence alignment. [Internet] [Masters thesis]. University of Hong Kong; 2016. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/10722/241433.

Council of Science Editors:

Xie F. Improving the quality of large scale multiple sequence alignment. [Masters Thesis]. University of Hong Kong; 2016. Available from: http://hdl.handle.net/10722/241433


University of Hong Kong

3. Ye, Yongtao. Aligning multiple sequences adaptively.

Degree: M. Phil., 2014, University of Hong Kong

With the rapid development of genome sequencing, an ever-increasing number of molecular biology analyses rely on the construction of an accurate multiple sequence alignment (MSA),… (more)

Subjects/Keywords: Sequence alignment (Bioinformatics)

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APA (6th Edition):

Ye, Y. (2014). Aligning multiple sequences adaptively. (Masters Thesis). University of Hong Kong. Retrieved from Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465

Chicago Manual of Style (16th Edition):

Ye, Yongtao. “Aligning multiple sequences adaptively.” 2014. Masters Thesis, University of Hong Kong. Accessed January 18, 2020. Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465.

MLA Handbook (7th Edition):

Ye, Yongtao. “Aligning multiple sequences adaptively.” 2014. Web. 18 Jan 2020.

Vancouver:

Ye Y. Aligning multiple sequences adaptively. [Internet] [Masters thesis]. University of Hong Kong; 2014. [cited 2020 Jan 18]. Available from: Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465.

Council of Science Editors:

Ye Y. Aligning multiple sequences adaptively. [Masters Thesis]. University of Hong Kong; 2014. Available from: Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465


Texas A&M University

4. Lu, Yue. Improving the quality of multiple sequence alignment.

Degree: 2009, Texas A&M University

 Multiple sequence alignment is an important bioinformatics problem, with applications in diverse types of biological analysis, such as structure prediction, phylogenetic analysis and critical sites… (more)

Subjects/Keywords: Multiple Sequence Alignment; Algorithms; Bioinformatics

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APA (6th Edition):

Lu, Y. (2009). Improving the quality of multiple sequence alignment. (Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/ETD-TAMU-3111

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Lu, Yue. “Improving the quality of multiple sequence alignment.” 2009. Thesis, Texas A&M University. Accessed January 18, 2020. http://hdl.handle.net/1969.1/ETD-TAMU-3111.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Lu, Yue. “Improving the quality of multiple sequence alignment.” 2009. Web. 18 Jan 2020.

Vancouver:

Lu Y. Improving the quality of multiple sequence alignment. [Internet] [Thesis]. Texas A&M University; 2009. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-3111.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Lu Y. Improving the quality of multiple sequence alignment. [Thesis]. Texas A&M University; 2009. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-3111

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Illinois – Urbana-Champaign

5. Nute, Michael Gordon. Statistical estimation problems in phylogenomics and applications in microbial ecology.

Degree: PhD, Statistics, 2019, University of Illinois – Urbana-Champaign

 With the growing awareness of the potential for microbial communities to play a role in human health, environmental remediation and other important processes, the challenge… (more)

Subjects/Keywords: Phylogenetics; Mutliple Sequence Alignment

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APA (6th Edition):

Nute, M. G. (2019). Statistical estimation problems in phylogenomics and applications in microbial ecology. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/105567

Chicago Manual of Style (16th Edition):

Nute, Michael Gordon. “Statistical estimation problems in phylogenomics and applications in microbial ecology.” 2019. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed January 18, 2020. http://hdl.handle.net/2142/105567.

MLA Handbook (7th Edition):

Nute, Michael Gordon. “Statistical estimation problems in phylogenomics and applications in microbial ecology.” 2019. Web. 18 Jan 2020.

Vancouver:

Nute MG. Statistical estimation problems in phylogenomics and applications in microbial ecology. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2019. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/2142/105567.

Council of Science Editors:

Nute MG. Statistical estimation problems in phylogenomics and applications in microbial ecology. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2019. Available from: http://hdl.handle.net/2142/105567


University of Hong Kong

6. Peng, Yu. Iterative de Bruijn graph assemblers for second-generation sequencing reads.

Degree: PhD, 2012, University of Hong Kong

The recent advance of second-generation sequencing technologies has made it possible to generate a vast amount of short read sequences from a DNA (cDNA) sample.… (more)

Subjects/Keywords: Nucleotide sequence - Data processing.; Sequence alignment (Bioinformatics)

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APA (6th Edition):

Peng, Y. (2012). Iterative de Bruijn graph assemblers for second-generation sequencing reads. (Doctoral Dissertation). University of Hong Kong. Retrieved from Peng, Y. [彭煜]. (2012). Iterative de Bruijn graph assemblers for second-generation sequencing reads. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5053405 ; http://dx.doi.org/10.5353/th_b5053405 ; http://hdl.handle.net/10722/188286

Chicago Manual of Style (16th Edition):

Peng, Yu. “Iterative de Bruijn graph assemblers for second-generation sequencing reads.” 2012. Doctoral Dissertation, University of Hong Kong. Accessed January 18, 2020. Peng, Y. [彭煜]. (2012). Iterative de Bruijn graph assemblers for second-generation sequencing reads. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5053405 ; http://dx.doi.org/10.5353/th_b5053405 ; http://hdl.handle.net/10722/188286.

MLA Handbook (7th Edition):

Peng, Yu. “Iterative de Bruijn graph assemblers for second-generation sequencing reads.” 2012. Web. 18 Jan 2020.

Vancouver:

Peng Y. Iterative de Bruijn graph assemblers for second-generation sequencing reads. [Internet] [Doctoral dissertation]. University of Hong Kong; 2012. [cited 2020 Jan 18]. Available from: Peng, Y. [彭煜]. (2012). Iterative de Bruijn graph assemblers for second-generation sequencing reads. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5053405 ; http://dx.doi.org/10.5353/th_b5053405 ; http://hdl.handle.net/10722/188286.

Council of Science Editors:

Peng Y. Iterative de Bruijn graph assemblers for second-generation sequencing reads. [Doctoral Dissertation]. University of Hong Kong; 2012. Available from: Peng, Y. [彭煜]. (2012). Iterative de Bruijn graph assemblers for second-generation sequencing reads. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5053405 ; http://dx.doi.org/10.5353/th_b5053405 ; http://hdl.handle.net/10722/188286


University of Georgia

7. Wang, Xuting. Multiple sequence alignment using traveling salesman problem algorithms.

Degree: MS, Computer Science, 2002, University of Georgia

 The construction of multiple sequence alignments (MSAs) is a fundamental problem in computational biology, but computing an optimal MSA is NP-hard. It is therefore necessary… (more)

Subjects/Keywords: multiple sequence alignment

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APA (6th Edition):

Wang, X. (2002). Multiple sequence alignment using traveling salesman problem algorithms. (Masters Thesis). University of Georgia. Retrieved from http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms

Chicago Manual of Style (16th Edition):

Wang, Xuting. “Multiple sequence alignment using traveling salesman problem algorithms.” 2002. Masters Thesis, University of Georgia. Accessed January 18, 2020. http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms.

MLA Handbook (7th Edition):

Wang, Xuting. “Multiple sequence alignment using traveling salesman problem algorithms.” 2002. Web. 18 Jan 2020.

Vancouver:

Wang X. Multiple sequence alignment using traveling salesman problem algorithms. [Internet] [Masters thesis]. University of Georgia; 2002. [cited 2020 Jan 18]. Available from: http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms.

Council of Science Editors:

Wang X. Multiple sequence alignment using traveling salesman problem algorithms. [Masters Thesis]. University of Georgia; 2002. Available from: http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms


University of Georgia

8. Liu, Renyi. Strategies for improving multiple alignment of retrotransposon sequences.

Degree: MS, Computer Science, 2001, University of Georgia

 Multiple sequence alignment plays a crucial role in extracting structural, functional, and evolutionary information from the exponentially growing sequence data from the ongoing genome sequencing.… (more)

Subjects/Keywords: Multiple sequence alignment

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APA (6th Edition):

Liu, R. (2001). Strategies for improving multiple alignment of retrotransposon sequences. (Masters Thesis). University of Georgia. Retrieved from http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms

Chicago Manual of Style (16th Edition):

Liu, Renyi. “Strategies for improving multiple alignment of retrotransposon sequences.” 2001. Masters Thesis, University of Georgia. Accessed January 18, 2020. http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms.

MLA Handbook (7th Edition):

Liu, Renyi. “Strategies for improving multiple alignment of retrotransposon sequences.” 2001. Web. 18 Jan 2020.

Vancouver:

Liu R. Strategies for improving multiple alignment of retrotransposon sequences. [Internet] [Masters thesis]. University of Georgia; 2001. [cited 2020 Jan 18]. Available from: http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms.

Council of Science Editors:

Liu R. Strategies for improving multiple alignment of retrotransposon sequences. [Masters Thesis]. University of Georgia; 2001. Available from: http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms


University of Hong Kong

9. 叶林; Ye, Lin. Exploring microbial community structures and functions of activated sludge by high-throughput sequencing.

Degree: PhD, 2012, University of Hong Kong

 To investigate the diversities and abundances of nitrifiers and to apply the highthroughput sequencing technologies to analyze the overall microbial community structures and functions in… (more)

Subjects/Keywords: Microbial genomics - Data processing.; Sequence alignment (Bioinformatics)

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APA (6th Edition):

叶林; Ye, L. (2012). Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. (Doctoral Dissertation). University of Hong Kong. Retrieved from Ye, L. [叶林]. (2012). Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b4807964 ; http://dx.doi.org/10.5353/th_b4807964 ; http://hdl.handle.net/10722/184237

Chicago Manual of Style (16th Edition):

叶林; Ye, Lin. “Exploring microbial community structures and functions of activated sludge by high-throughput sequencing.” 2012. Doctoral Dissertation, University of Hong Kong. Accessed January 18, 2020. Ye, L. [叶林]. (2012). Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b4807964 ; http://dx.doi.org/10.5353/th_b4807964 ; http://hdl.handle.net/10722/184237.

MLA Handbook (7th Edition):

叶林; Ye, Lin. “Exploring microbial community structures and functions of activated sludge by high-throughput sequencing.” 2012. Web. 18 Jan 2020.

Vancouver:

叶林; Ye L. Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. [Internet] [Doctoral dissertation]. University of Hong Kong; 2012. [cited 2020 Jan 18]. Available from: Ye, L. [叶林]. (2012). Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b4807964 ; http://dx.doi.org/10.5353/th_b4807964 ; http://hdl.handle.net/10722/184237.

Council of Science Editors:

叶林; Ye L. Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. [Doctoral Dissertation]. University of Hong Kong; 2012. Available from: Ye, L. [叶林]. (2012). Exploring microbial community structures and functions of activated sludge by high-throughput sequencing. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b4807964 ; http://dx.doi.org/10.5353/th_b4807964 ; http://hdl.handle.net/10722/184237

10. Amouda, A. Self organizing genetic algorithm for multiple sequence alignment; -.

Degree: Computer Science, 2011, Pondicherry University

Genetic Algorithms (GA) are adaptive search techniques used to solve difficult optimization problem of huge search space in various scientific domains. To solve complex problems… (more)

Subjects/Keywords: Self organizing genetic algorithm; multiple sequence alignment

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APA (6th Edition):

Amouda, A. (2011). Self organizing genetic algorithm for multiple sequence alignment; -. (Thesis). Pondicherry University. Retrieved from http://shodhganga.inflibnet.ac.in/handle/10603/5296

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Amouda, A. “Self organizing genetic algorithm for multiple sequence alignment; -.” 2011. Thesis, Pondicherry University. Accessed January 18, 2020. http://shodhganga.inflibnet.ac.in/handle/10603/5296.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Amouda, A. “Self organizing genetic algorithm for multiple sequence alignment; -.” 2011. Web. 18 Jan 2020.

Vancouver:

Amouda A. Self organizing genetic algorithm for multiple sequence alignment; -. [Internet] [Thesis]. Pondicherry University; 2011. [cited 2020 Jan 18]. Available from: http://shodhganga.inflibnet.ac.in/handle/10603/5296.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Amouda A. Self organizing genetic algorithm for multiple sequence alignment; -. [Thesis]. Pondicherry University; 2011. Available from: http://shodhganga.inflibnet.ac.in/handle/10603/5296

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of South Carolina

11. Orlova, Tatiana. Mathematical Models, Algorithms, and Statistics of Sequence Alignment.

Degree: MS, Mathematics, 2010, University of South Carolina

  The problem of biological sequence comparison arises naturally in an attempt to explain many biological phenomena. Due to the combinatorial structure and pattern preserving… (more)

Subjects/Keywords: Mathematics; Physical Sciences and Mathematics; sequence alignment

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APA (6th Edition):

Orlova, T. (2010). Mathematical Models, Algorithms, and Statistics of Sequence Alignment. (Masters Thesis). University of South Carolina. Retrieved from https://scholarcommons.sc.edu/etd/384

Chicago Manual of Style (16th Edition):

Orlova, Tatiana. “Mathematical Models, Algorithms, and Statistics of Sequence Alignment.” 2010. Masters Thesis, University of South Carolina. Accessed January 18, 2020. https://scholarcommons.sc.edu/etd/384.

MLA Handbook (7th Edition):

Orlova, Tatiana. “Mathematical Models, Algorithms, and Statistics of Sequence Alignment.” 2010. Web. 18 Jan 2020.

Vancouver:

Orlova T. Mathematical Models, Algorithms, and Statistics of Sequence Alignment. [Internet] [Masters thesis]. University of South Carolina; 2010. [cited 2020 Jan 18]. Available from: https://scholarcommons.sc.edu/etd/384.

Council of Science Editors:

Orlova T. Mathematical Models, Algorithms, and Statistics of Sequence Alignment. [Masters Thesis]. University of South Carolina; 2010. Available from: https://scholarcommons.sc.edu/etd/384


Penn State University

12. Hsu, Chih-Hao. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.

Degree: PhD, Computer Science and Engineering, 2009, Penn State University

 The problem of computing a multiple-sequence alignment (MSA) is very important for the analysis of biological sequences. An equally critical problem is to evaluate the… (more)

Subjects/Keywords: Evolution; Gene conversion; Orthology; Multiple-Sequence Alignment

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APA (6th Edition):

Hsu, C. (2009). INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. (Doctoral Dissertation). Penn State University. Retrieved from https://etda.libraries.psu.edu/catalog/10267

Chicago Manual of Style (16th Edition):

Hsu, Chih-Hao. “INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.” 2009. Doctoral Dissertation, Penn State University. Accessed January 18, 2020. https://etda.libraries.psu.edu/catalog/10267.

MLA Handbook (7th Edition):

Hsu, Chih-Hao. “INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.” 2009. Web. 18 Jan 2020.

Vancouver:

Hsu C. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. [Internet] [Doctoral dissertation]. Penn State University; 2009. [cited 2020 Jan 18]. Available from: https://etda.libraries.psu.edu/catalog/10267.

Council of Science Editors:

Hsu C. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. [Doctoral Dissertation]. Penn State University; 2009. Available from: https://etda.libraries.psu.edu/catalog/10267


University of Saskatchewan

13. Jin, Lingling. Multiple sequence alignment augmented by expert user constraints.

Degree: 2010, University of Saskatchewan

Sequence alignment has become one of the most common tasks in bioinformatics. Most of the existing sequence alignment methods use general scoring schemes. But these… (more)

Subjects/Keywords: multiple sequence alignment; constraint; compatible constraint set

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APA (6th Edition):

Jin, L. (2010). Multiple sequence alignment augmented by expert user constraints. (Thesis). University of Saskatchewan. Retrieved from http://hdl.handle.net/10388/etd-04092010-093748

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Jin, Lingling. “Multiple sequence alignment augmented by expert user constraints.” 2010. Thesis, University of Saskatchewan. Accessed January 18, 2020. http://hdl.handle.net/10388/etd-04092010-093748.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Jin, Lingling. “Multiple sequence alignment augmented by expert user constraints.” 2010. Web. 18 Jan 2020.

Vancouver:

Jin L. Multiple sequence alignment augmented by expert user constraints. [Internet] [Thesis]. University of Saskatchewan; 2010. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/10388/etd-04092010-093748.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Jin L. Multiple sequence alignment augmented by expert user constraints. [Thesis]. University of Saskatchewan; 2010. Available from: http://hdl.handle.net/10388/etd-04092010-093748

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Houston

14. Albayrak, Levent 1981-. Novel Alignment Based Clustering Algorithms for Pan Genome Analysis of Bacteria Species.

Degree: Computer Science, Department of, 2016, University of Houston

 Understanding the basic rules of bacterial evolution and adaptation is critical in developing new anti-bacterial drugs, the use of bacteria in biotechnology applications as well… (more)

Subjects/Keywords: bioinformatics; sequence alignment; sequence clustering; clustering algorithm; global alignment; gene profiles; functional similarity; bacteria; bartonella

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APA (6th Edition):

Albayrak, L. 1. (2016). Novel Alignment Based Clustering Algorithms for Pan Genome Analysis of Bacteria Species. (Thesis). University of Houston. Retrieved from http://hdl.handle.net/10657/3624

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Albayrak, Levent 1981-. “Novel Alignment Based Clustering Algorithms for Pan Genome Analysis of Bacteria Species.” 2016. Thesis, University of Houston. Accessed January 18, 2020. http://hdl.handle.net/10657/3624.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Albayrak, Levent 1981-. “Novel Alignment Based Clustering Algorithms for Pan Genome Analysis of Bacteria Species.” 2016. Web. 18 Jan 2020.

Vancouver:

Albayrak L1. Novel Alignment Based Clustering Algorithms for Pan Genome Analysis of Bacteria Species. [Internet] [Thesis]. University of Houston; 2016. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/10657/3624.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Albayrak L1. Novel Alignment Based Clustering Algorithms for Pan Genome Analysis of Bacteria Species. [Thesis]. University of Houston; 2016. Available from: http://hdl.handle.net/10657/3624

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Houston

15. -7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.

Degree: Biology and Biochemistry, Department of, 2015, University of Houston

 This dissertation consists of a study of the effects of multiple-alignment method on phylogenetic analyses. First, I investigated the effects of multiple-sequence alignment quality on… (more)

Subjects/Keywords: Multiple-sequence alignment; alignment refining; protein sequence evolution; branch-length estimation; phylogenetic trees; mammals

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APA (6th Edition):

-7998-0272. (2015). Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. (Thesis). University of Houston. Retrieved from http://hdl.handle.net/10657/1741

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

-7998-0272. “Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.” 2015. Thesis, University of Houston. Accessed January 18, 2020. http://hdl.handle.net/10657/1741.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

-7998-0272. “Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.” 2015. Web. 18 Jan 2020.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Vancouver:

-7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. [Internet] [Thesis]. University of Houston; 2015. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/10657/1741.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

-7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. [Thesis]. University of Houston; 2015. Available from: http://hdl.handle.net/10657/1741

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation


Texas A&M University

16. Sahraeian, Sayed 1983-. Probabilistic Approaches in Comparative Analysis of Biological Networks and Sequences.

Degree: 2013, Texas A&M University

 Comparative analysis of genomic data investigates the relationship of genome structure and function across different biological species to shed light on their similarities and differences.… (more)

Subjects/Keywords: Network alignment; Network querying; Sequence alignment; Comparative genomics

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APA (6th Edition):

Sahraeian, S. 1. (2013). Probabilistic Approaches in Comparative Analysis of Biological Networks and Sequences. (Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/149225

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Sahraeian, Sayed 1983-. “Probabilistic Approaches in Comparative Analysis of Biological Networks and Sequences.” 2013. Thesis, Texas A&M University. Accessed January 18, 2020. http://hdl.handle.net/1969.1/149225.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Sahraeian, Sayed 1983-. “Probabilistic Approaches in Comparative Analysis of Biological Networks and Sequences.” 2013. Web. 18 Jan 2020.

Vancouver:

Sahraeian S1. Probabilistic Approaches in Comparative Analysis of Biological Networks and Sequences. [Internet] [Thesis]. Texas A&M University; 2013. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/1969.1/149225.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Sahraeian S1. Probabilistic Approaches in Comparative Analysis of Biological Networks and Sequences. [Thesis]. Texas A&M University; 2013. Available from: http://hdl.handle.net/1969.1/149225

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Texas Southwestern Medical Center

17. Tong, Jing. Improving Profile Similarity Search and Alignment of Protein Sequences.

Degree: 2015, University of Texas Southwestern Medical Center

 Protein function prediction is one of the most important problems in the field of computational biology. The most reliable method to predict protein function is… (more)

Subjects/Keywords: Protein Conformation; Proteins; Proteomics; Sequence Alignment; Sequence Homology

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APA (6th Edition):

Tong, J. (2015). Improving Profile Similarity Search and Alignment of Protein Sequences. (Thesis). University of Texas Southwestern Medical Center. Retrieved from http://hdl.handle.net/2152.5/4458

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Tong, Jing. “Improving Profile Similarity Search and Alignment of Protein Sequences.” 2015. Thesis, University of Texas Southwestern Medical Center. Accessed January 18, 2020. http://hdl.handle.net/2152.5/4458.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Tong, Jing. “Improving Profile Similarity Search and Alignment of Protein Sequences.” 2015. Web. 18 Jan 2020.

Vancouver:

Tong J. Improving Profile Similarity Search and Alignment of Protein Sequences. [Internet] [Thesis]. University of Texas Southwestern Medical Center; 2015. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/2152.5/4458.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Tong J. Improving Profile Similarity Search and Alignment of Protein Sequences. [Thesis]. University of Texas Southwestern Medical Center; 2015. Available from: http://hdl.handle.net/2152.5/4458

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Missouri – Columbia

18. Deng, Xin. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.

Degree: 2013, University of Missouri – Columbia

 Protein sequence and profile alignment has been used essentially in most bioinformatics tasks such as protein structure modeling, function prediction, and phylogenetic analysis. We designed… (more)

Subjects/Keywords: protein sequence alignment; solvent accessibility; protein structure prediction; protein model selection; Amino acid sequence; Solvents  – Analysis; Sequence alignment (Bioinformatics)

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APA (6th Edition):

Deng, X. (2013). Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. (Thesis). University of Missouri – Columbia. Retrieved from http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Thesis, University of Missouri – Columbia. Accessed January 18, 2020. http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Web. 18 Jan 2020.

Vancouver:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Internet] [Thesis]. University of Missouri – Columbia; 2013. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Thesis]. University of Missouri – Columbia; 2013. Available from: http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Texas A&M University

19. Shrestha, Prabhat. Nature-Inspired Sensor Data Analytics Methods for Simulation Input Modeling.

Degree: MS, Construction Management, 2018, Texas A&M University

 The general proliferation of technology including smartphones and sensors present both an opportunity and a challenge for the construction industry. On the one hand, it… (more)

Subjects/Keywords: Construction simulation; activity sequence; chaos theory; genetic algorithm; fuzzy data; sensor networks; sequence alignment; construction activity recognition; multi-dimensional sequence alignment

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APA (6th Edition):

Shrestha, P. (2018). Nature-Inspired Sensor Data Analytics Methods for Simulation Input Modeling. (Masters Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/173517

Chicago Manual of Style (16th Edition):

Shrestha, Prabhat. “Nature-Inspired Sensor Data Analytics Methods for Simulation Input Modeling.” 2018. Masters Thesis, Texas A&M University. Accessed January 18, 2020. http://hdl.handle.net/1969.1/173517.

MLA Handbook (7th Edition):

Shrestha, Prabhat. “Nature-Inspired Sensor Data Analytics Methods for Simulation Input Modeling.” 2018. Web. 18 Jan 2020.

Vancouver:

Shrestha P. Nature-Inspired Sensor Data Analytics Methods for Simulation Input Modeling. [Internet] [Masters thesis]. Texas A&M University; 2018. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/1969.1/173517.

Council of Science Editors:

Shrestha P. Nature-Inspired Sensor Data Analytics Methods for Simulation Input Modeling. [Masters Thesis]. Texas A&M University; 2018. Available from: http://hdl.handle.net/1969.1/173517

20. Westbrook, Anthony Stephen. The PALADIN Suite: Multifaceted Characterization of Whole Metagenome Shotgun Sequences.

Degree: MS, 2017, University of New Hampshire

  Whole metagenome shotgun sequencing is a powerful approach for assaying many aspects of microbial communities, including the functional and symbiotic potential of each contributing… (more)

Subjects/Keywords: BLAST; Burrows-Wheeler Transform; protein alignment; sequence alignment; Molecular biology; Computer science; Bioinformatics

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APA (6th Edition):

Westbrook, A. S. (2017). The PALADIN Suite: Multifaceted Characterization of Whole Metagenome Shotgun Sequences. (Thesis). University of New Hampshire. Retrieved from https://scholars.unh.edu/thesis/1144

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Westbrook, Anthony Stephen. “The PALADIN Suite: Multifaceted Characterization of Whole Metagenome Shotgun Sequences.” 2017. Thesis, University of New Hampshire. Accessed January 18, 2020. https://scholars.unh.edu/thesis/1144.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Westbrook, Anthony Stephen. “The PALADIN Suite: Multifaceted Characterization of Whole Metagenome Shotgun Sequences.” 2017. Web. 18 Jan 2020.

Vancouver:

Westbrook AS. The PALADIN Suite: Multifaceted Characterization of Whole Metagenome Shotgun Sequences. [Internet] [Thesis]. University of New Hampshire; 2017. [cited 2020 Jan 18]. Available from: https://scholars.unh.edu/thesis/1144.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Westbrook AS. The PALADIN Suite: Multifaceted Characterization of Whole Metagenome Shotgun Sequences. [Thesis]. University of New Hampshire; 2017. Available from: https://scholars.unh.edu/thesis/1144

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


The Ohio State University

21. Li, Yuheng. Searching for remotely homologous sequences in protein databases with hybrid PSI-blast.

Degree: PhD, Biophysics, 2006, The Ohio State University

Sequence alignment is one of the fundamental techniques used in molecular biology. It has been widely used in many biological applications, such as protein classification,… (more)

Subjects/Keywords: sequence alignment; sequence database searches; hybrid alignment; PSI-BLAST

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APA (6th Edition):

Li, Y. (2006). Searching for remotely homologous sequences in protein databases with hybrid PSI-blast. (Doctoral Dissertation). The Ohio State University. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=osu1164741421

Chicago Manual of Style (16th Edition):

Li, Yuheng. “Searching for remotely homologous sequences in protein databases with hybrid PSI-blast.” 2006. Doctoral Dissertation, The Ohio State University. Accessed January 18, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=osu1164741421.

MLA Handbook (7th Edition):

Li, Yuheng. “Searching for remotely homologous sequences in protein databases with hybrid PSI-blast.” 2006. Web. 18 Jan 2020.

Vancouver:

Li Y. Searching for remotely homologous sequences in protein databases with hybrid PSI-blast. [Internet] [Doctoral dissertation]. The Ohio State University; 2006. [cited 2020 Jan 18]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1164741421.

Council of Science Editors:

Li Y. Searching for remotely homologous sequences in protein databases with hybrid PSI-blast. [Doctoral Dissertation]. The Ohio State University; 2006. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1164741421


Montana Tech

22. Nord, Alex. Mirage: A Novel Multiple Protein Sequence Alignment Tool.

Degree: MS, 2017, Montana Tech

  A fundamental problem in computational biology is the organization of many related sequences into a multiple sequence alignment (MSA) [2]. MSAs have a range… (more)

Subjects/Keywords: multiple sequence alignment; computational biology; transitive sequence alignment; protein isoforms; alternative reading frames; Computer Sciences; Other Computer Sciences

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Nord, A. (2017). Mirage: A Novel Multiple Protein Sequence Alignment Tool. (Masters Thesis). Montana Tech. Retrieved from https://scholarworks.umt.edu/etd/11110

Chicago Manual of Style (16th Edition):

Nord, Alex. “Mirage: A Novel Multiple Protein Sequence Alignment Tool.” 2017. Masters Thesis, Montana Tech. Accessed January 18, 2020. https://scholarworks.umt.edu/etd/11110.

MLA Handbook (7th Edition):

Nord, Alex. “Mirage: A Novel Multiple Protein Sequence Alignment Tool.” 2017. Web. 18 Jan 2020.

Vancouver:

Nord A. Mirage: A Novel Multiple Protein Sequence Alignment Tool. [Internet] [Masters thesis]. Montana Tech; 2017. [cited 2020 Jan 18]. Available from: https://scholarworks.umt.edu/etd/11110.

Council of Science Editors:

Nord A. Mirage: A Novel Multiple Protein Sequence Alignment Tool. [Masters Thesis]. Montana Tech; 2017. Available from: https://scholarworks.umt.edu/etd/11110


Vanderbilt University

23. Heinze, Sten. Improvements to BCL::Fold de novo Protein Structure Prediction.

Degree: PhD, Chemistry, 2015, Vanderbilt University

 Proteins play a pivotal role in the functions of a cell. Structural information about proteins facilitates the understanding of their function. Limitations of experimental methods… (more)

Subjects/Keywords: SABmark; Cline; BCL::Fold; CASP; Topology score; loop predictions; sheet alignment; SAXS; Debye; sequence analysis; BCL::Align; sequence alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Heinze, S. (2015). Improvements to BCL::Fold de novo Protein Structure Prediction. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://etd.library.vanderbilt.edu/available/etd-04132015-111827/ ;

Chicago Manual of Style (16th Edition):

Heinze, Sten. “Improvements to BCL::Fold de novo Protein Structure Prediction.” 2015. Doctoral Dissertation, Vanderbilt University. Accessed January 18, 2020. http://etd.library.vanderbilt.edu/available/etd-04132015-111827/ ;.

MLA Handbook (7th Edition):

Heinze, Sten. “Improvements to BCL::Fold de novo Protein Structure Prediction.” 2015. Web. 18 Jan 2020.

Vancouver:

Heinze S. Improvements to BCL::Fold de novo Protein Structure Prediction. [Internet] [Doctoral dissertation]. Vanderbilt University; 2015. [cited 2020 Jan 18]. Available from: http://etd.library.vanderbilt.edu/available/etd-04132015-111827/ ;.

Council of Science Editors:

Heinze S. Improvements to BCL::Fold de novo Protein Structure Prediction. [Doctoral Dissertation]. Vanderbilt University; 2015. Available from: http://etd.library.vanderbilt.edu/available/etd-04132015-111827/ ;


University of Illinois – Urbana-Champaign

24. Kim, Jaebum. Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences.

Degree: PhD, 0112, 2010, University of Illinois – Urbana-Champaign

 Non-coding sequences, constituting a large fraction of genomic DNA, are of great importance because (i) they harbor functional elements that are involved in the regulation… (more)

Subjects/Keywords: Multiple sequence alignment; Probabilistic model; Insertions and deletions; Simulation-based benchmark; Regulatory sequences; Sequence evolution

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APA (6th Edition):

Kim, J. (2010). Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/16981

Chicago Manual of Style (16th Edition):

Kim, Jaebum. “Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed January 18, 2020. http://hdl.handle.net/2142/16981.

MLA Handbook (7th Edition):

Kim, Jaebum. “Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences.” 2010. Web. 18 Jan 2020.

Vancouver:

Kim J. Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2020 Jan 18]. Available from: http://hdl.handle.net/2142/16981.

Council of Science Editors:

Kim J. Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/16981


Brigham Young University

25. Menlove, Kit J. Model Detection Based upon Amino Acid Properties.

Degree: MS, 2010, Brigham Young University

 Similarity searches are an essential component to most bioinformatic applications. They form the bases of structural motif identification, gene identification, and insights into functional associations.… (more)

Subjects/Keywords: similarity searching; fold recognition; homology modeling; sequence profiles; BLAST; sequence alignment; protein evolution; threading; Biology

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APA (6th Edition):

Menlove, K. J. (2010). Model Detection Based upon Amino Acid Properties. (Masters Thesis). Brigham Young University. Retrieved from https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=3252&context=etd

Chicago Manual of Style (16th Edition):

Menlove, Kit J. “Model Detection Based upon Amino Acid Properties.” 2010. Masters Thesis, Brigham Young University. Accessed January 18, 2020. https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=3252&context=etd.

MLA Handbook (7th Edition):

Menlove, Kit J. “Model Detection Based upon Amino Acid Properties.” 2010. Web. 18 Jan 2020.

Vancouver:

Menlove KJ. Model Detection Based upon Amino Acid Properties. [Internet] [Masters thesis]. Brigham Young University; 2010. [cited 2020 Jan 18]. Available from: https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=3252&context=etd.

Council of Science Editors:

Menlove KJ. Model Detection Based upon Amino Acid Properties. [Masters Thesis]. Brigham Young University; 2010. Available from: https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=3252&context=etd


University of New Orleans

26. Coco, Joseph. PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences.

Degree: MS, Computer Science, 2011, University of New Orleans

 RNA-Sequencing (RNA-Seq) has become one of the most widely used techniques to interrogate the transcriptome of an organism since the advent of next generation sequencing… (more)

Subjects/Keywords: exogenous agents; RNA-Seq; contamination; sequence alignment; cancer etiology; sequence assembly; taxonomical classification; cancer treatment

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APA (6th Edition):

Coco, J. (2011). PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences. (Thesis). University of New Orleans. Retrieved from https://scholarworks.uno.edu/td/1297

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Coco, Joseph. “PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences.” 2011. Thesis, University of New Orleans. Accessed January 18, 2020. https://scholarworks.uno.edu/td/1297.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Coco, Joseph. “PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences.” 2011. Web. 18 Jan 2020.

Vancouver:

Coco J. PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences. [Internet] [Thesis]. University of New Orleans; 2011. [cited 2020 Jan 18]. Available from: https://scholarworks.uno.edu/td/1297.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Coco J. PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences. [Thesis]. University of New Orleans; 2011. Available from: https://scholarworks.uno.edu/td/1297

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

27. Perčič, Uroš. PORAVNAVA VEČ NUKLEOTIDNIH ALI PROTEINSKIH ZAPOREDIJ.

Degree: 2013, Univerza v Mariboru

Hkratna poravnava več DNK ali proteinskih zaporedij je eno najpogostejših opravil na področju bioinformatike. Uporabna je za filogenetsko analizo, detekcijo homologije med sekvenciranim genom in… (more)

Subjects/Keywords: DNK zaporedje; proteinsko zaporedje; poravnava zaporedij; homologija; DNK sequence; protein sequence; sequence alignment; homology; info:eu-repo/classification/udc/575.112:004(043)

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Perčič, U. (2013). PORAVNAVA VEČ NUKLEOTIDNIH ALI PROTEINSKIH ZAPOREDIJ. (Masters Thesis). Univerza v Mariboru. Retrieved from https://dk.um.si/IzpisGradiva.php?id=40633 ; https://dk.um.si/Dokument.php?id=55694&dn= ; https://plus.si.cobiss.net/opac7/bib/17058838?lang=sl

Chicago Manual of Style (16th Edition):

Perčič, Uroš. “PORAVNAVA VEČ NUKLEOTIDNIH ALI PROTEINSKIH ZAPOREDIJ.” 2013. Masters Thesis, Univerza v Mariboru. Accessed January 18, 2020. https://dk.um.si/IzpisGradiva.php?id=40633 ; https://dk.um.si/Dokument.php?id=55694&dn= ; https://plus.si.cobiss.net/opac7/bib/17058838?lang=sl.

MLA Handbook (7th Edition):

Perčič, Uroš. “PORAVNAVA VEČ NUKLEOTIDNIH ALI PROTEINSKIH ZAPOREDIJ.” 2013. Web. 18 Jan 2020.

Vancouver:

Perčič U. PORAVNAVA VEČ NUKLEOTIDNIH ALI PROTEINSKIH ZAPOREDIJ. [Internet] [Masters thesis]. Univerza v Mariboru; 2013. [cited 2020 Jan 18]. Available from: https://dk.um.si/IzpisGradiva.php?id=40633 ; https://dk.um.si/Dokument.php?id=55694&dn= ; https://plus.si.cobiss.net/opac7/bib/17058838?lang=sl.

Council of Science Editors:

Perčič U. PORAVNAVA VEČ NUKLEOTIDNIH ALI PROTEINSKIH ZAPOREDIJ. [Masters Thesis]. Univerza v Mariboru; 2013. Available from: https://dk.um.si/IzpisGradiva.php?id=40633 ; https://dk.um.si/Dokument.php?id=55694&dn= ; https://plus.si.cobiss.net/opac7/bib/17058838?lang=sl


Georgia State University

28. Nguyen, Ken D. Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations.

Degree: PhD, Computer Science, 2011, Georgia State University

  Aligning multiple biological sequences such as protein sequences or DNA/RNA sequences is a fundamental task in bioinformatics and sequence analysis. These alignments may contain… (more)

Subjects/Keywords: Multiple sequence alignments; Parallel multiple sequence alignment Algorithms; Reliability in multiple sequence alignments; Algorithms; Scoring functions; Computer Sciences

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Nguyen, K. D. (2011). Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations. (Doctoral Dissertation). Georgia State University. Retrieved from https://scholarworks.gsu.edu/cs_diss/62

Chicago Manual of Style (16th Edition):

Nguyen, Ken D. “Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations.” 2011. Doctoral Dissertation, Georgia State University. Accessed January 18, 2020. https://scholarworks.gsu.edu/cs_diss/62.

MLA Handbook (7th Edition):

Nguyen, Ken D. “Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations.” 2011. Web. 18 Jan 2020.

Vancouver:

Nguyen KD. Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations. [Internet] [Doctoral dissertation]. Georgia State University; 2011. [cited 2020 Jan 18]. Available from: https://scholarworks.gsu.edu/cs_diss/62.

Council of Science Editors:

Nguyen KD. Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations. [Doctoral Dissertation]. Georgia State University; 2011. Available from: https://scholarworks.gsu.edu/cs_diss/62


University of Minnesota

29. DeRonne, Kevin W. Optimization and Machine Learning Applications to Protein Sequence and Structure.

Degree: Computer Science, 2013, University of Minnesota

Subjects/Keywords: Alignment; Optimal; Pareto; Sequence

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

DeRonne, K. W. (2013). Optimization and Machine Learning Applications to Protein Sequence and Structure. (Thesis). University of Minnesota. Retrieved from http://purl.umn.edu/148695

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

DeRonne, Kevin W. “Optimization and Machine Learning Applications to Protein Sequence and Structure.” 2013. Thesis, University of Minnesota. Accessed January 18, 2020. http://purl.umn.edu/148695.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

DeRonne, Kevin W. “Optimization and Machine Learning Applications to Protein Sequence and Structure.” 2013. Web. 18 Jan 2020.

Vancouver:

DeRonne KW. Optimization and Machine Learning Applications to Protein Sequence and Structure. [Internet] [Thesis]. University of Minnesota; 2013. [cited 2020 Jan 18]. Available from: http://purl.umn.edu/148695.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

DeRonne KW. Optimization and Machine Learning Applications to Protein Sequence and Structure. [Thesis]. University of Minnesota; 2013. Available from: http://purl.umn.edu/148695

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Rochester Institute of Technology

30. Schulze, Katharina. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.

Degree: MS, Thomas H. Gosnell School of Life Sciences (COS), 2014, Rochester Institute of Technology

  Traditional transcription factor binding site analyses focus solely on the nucleotide composition of site despite the fact that more recent studies have shown transcription… (more)

Subjects/Keywords: DNA structure; Multiple sequence alignment; Transcription factor binding sites

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Schulze, K. (2014). Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. (Masters Thesis). Rochester Institute of Technology. Retrieved from https://scholarworks.rit.edu/theses/8368

Chicago Manual of Style (16th Edition):

Schulze, Katharina. “Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.” 2014. Masters Thesis, Rochester Institute of Technology. Accessed January 18, 2020. https://scholarworks.rit.edu/theses/8368.

MLA Handbook (7th Edition):

Schulze, Katharina. “Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.” 2014. Web. 18 Jan 2020.

Vancouver:

Schulze K. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. [Internet] [Masters thesis]. Rochester Institute of Technology; 2014. [cited 2020 Jan 18]. Available from: https://scholarworks.rit.edu/theses/8368.

Council of Science Editors:

Schulze K. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. [Masters Thesis]. Rochester Institute of Technology; 2014. Available from: https://scholarworks.rit.edu/theses/8368

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