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You searched for subject:(sekvence nukleotid ). Showing records 1 – 3 of 3 total matches.

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Brno University of Technology

1. Paulenda, Ján. Sestavování fragmentů DNA: DNA Fragmnent Assembly.

Degree: 2018, Brno University of Technology

The main subject of this Bachelor's thesis is the DNA fragment assembly. The problem is transposed to finding a shortest superstring problem. Different assembly techniques and string aligning methods are introduced in the theoretical part. Programming language Perl, which was used to implement the assembly, is also widely mentioned, along with its features. Last part of the thesis involves tests' statistics of the final implemented solution. Advisors/Committee Members: Burgetová, Ivana (advisor), Jaša, Petr (referee).

Subjects/Keywords: DNA; sekvence; superřetězec; Perl; bioinformatika; nukleotid; DNA; sequence; superstring; Perl; bioinformatics; nukleotide

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Paulenda, J. (2018). Sestavování fragmentů DNA: DNA Fragmnent Assembly. (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/52805

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Paulenda, Ján. “Sestavování fragmentů DNA: DNA Fragmnent Assembly.” 2018. Thesis, Brno University of Technology. Accessed December 04, 2020. http://hdl.handle.net/11012/52805.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Paulenda, Ján. “Sestavování fragmentů DNA: DNA Fragmnent Assembly.” 2018. Web. 04 Dec 2020.

Vancouver:

Paulenda J. Sestavování fragmentů DNA: DNA Fragmnent Assembly. [Internet] [Thesis]. Brno University of Technology; 2018. [cited 2020 Dec 04]. Available from: http://hdl.handle.net/11012/52805.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Paulenda J. Sestavování fragmentů DNA: DNA Fragmnent Assembly. [Thesis]. Brno University of Technology; 2018. Available from: http://hdl.handle.net/11012/52805

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brno University of Technology

2. Jaša, Petr. Techniky pro získávání dat v genomice: Genomic Data Mining Techniques.

Degree: 2020, Brno University of Technology

First of all, this thesis sets itself a goal to introduce some common technics for datamining in genomics and as a next step to implement own algorithm like algorithm BLAST. In the concrete, this work is pointed to sequences of DNA. The DNA sequence contains in itself genetic information, which is template for living organism. For explanation this information can be used number of technics. This paper describes algorithm Fasta and algorithms from BLAST family. With these algorithms, it is possible to gain a lot of important information even about such DNA sequences, where only primary structure is known. Principle of these algorithms is based on alignments of one query sequence, which we want to obtain some information from, with many sequences stored in database. According to result alignment, it is possible to determine many features of the query sequence. Advisors/Committee Members: Burgetová, Ivana (advisor), Křivka, Zbyněk (referee).

Subjects/Keywords: BLAST; Fasta; DNA; RNA; sekvence DNA; nukleotid; báze; adenosin; cytosin; guanin; tymin; dynamické programování; porovnání; zarovnání; vyhledávání; BLAST; Fasta; DNA; RNA; sequence of DNA; nucleotid; base; adenosine; cytosine; guanine; thymine; dynamic programming; comparison; alignment; searching

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Jaša, P. (2020). Techniky pro získávání dat v genomice: Genomic Data Mining Techniques. (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/187547

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Jaša, Petr. “Techniky pro získávání dat v genomice: Genomic Data Mining Techniques.” 2020. Thesis, Brno University of Technology. Accessed December 04, 2020. http://hdl.handle.net/11012/187547.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Jaša, Petr. “Techniky pro získávání dat v genomice: Genomic Data Mining Techniques.” 2020. Web. 04 Dec 2020.

Vancouver:

Jaša P. Techniky pro získávání dat v genomice: Genomic Data Mining Techniques. [Internet] [Thesis]. Brno University of Technology; 2020. [cited 2020 Dec 04]. Available from: http://hdl.handle.net/11012/187547.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Jaša P. Techniky pro získávání dat v genomice: Genomic Data Mining Techniques. [Thesis]. Brno University of Technology; 2020. Available from: http://hdl.handle.net/11012/187547

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brno University of Technology

3. Šudák, Vítězslav. Distanční metody konstrukce fylogenetických stromů: Distance methods for reconstruction of phylogenetic trees.

Degree: 2014, Brno University of Technology

Thesis „Distance methods for reconstruction phylogenetic trees“ summarizes notes about methods for calculating evolutionary distances from aligned nucleotide, eminoacid or codon sequences. Then using these distances in methods for reconstructing phylogenetic trees from matrixes made of these distances. Aim is to create these method as a functional scripts in MATLAB software and appliance these method on real sequences downloaded from public databanks on internet in FASTA format, and to create a thesis about hese methods and describe them and my results. Advisors/Committee Members: Škutková, Helena (advisor), Provazník, Ivo (referee).

Subjects/Keywords: Nukleotid Sekvence Báze Komplementární Purin Pyrimidin Mutace Zarovnání Mezera Míra změny Evoluční vzdálenost Tranzice Transverze Triplet Kodón Rozložení Korekce Synonymní Nesynonymní Proporcionální Fylogentický Strom Operační taxonovická jednotka (OTU) Shluk Uzel Větev Zakořeněný Nezakořeněný Soused Minimální evoluce Odchylka Matice; Nucleotide Sequence Base Complementar Purin Pyrimidin Mutation Alignment Gap Rate of substitution Evolutionary distance Transition Transversion Triplet Codon Distribution Corection Synonymous Nonsynonymous Proportional Phylogenetic Tree Operatinal taxonomic unit (OTU) Cluster Branch Rooted Unrooted Neighbor Minimal evolution Variance Matrix

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Šudák, V. (2014). Distanční metody konstrukce fylogenetických stromů: Distance methods for reconstruction of phylogenetic trees. (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/12440

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Šudák, Vítězslav. “Distanční metody konstrukce fylogenetických stromů: Distance methods for reconstruction of phylogenetic trees.” 2014. Thesis, Brno University of Technology. Accessed December 04, 2020. http://hdl.handle.net/11012/12440.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Šudák, Vítězslav. “Distanční metody konstrukce fylogenetických stromů: Distance methods for reconstruction of phylogenetic trees.” 2014. Web. 04 Dec 2020.

Vancouver:

Šudák V. Distanční metody konstrukce fylogenetických stromů: Distance methods for reconstruction of phylogenetic trees. [Internet] [Thesis]. Brno University of Technology; 2014. [cited 2020 Dec 04]. Available from: http://hdl.handle.net/11012/12440.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Šudák V. Distanční metody konstrukce fylogenetických stromů: Distance methods for reconstruction of phylogenetic trees. [Thesis]. Brno University of Technology; 2014. Available from: http://hdl.handle.net/11012/12440

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

.