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You searched for subject:(Protein structure alignment). Showing records 1 – 29 of 29 total matches.

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University of Waterloo

1. Cui, Xuefeng. Finding Similar Protein Structures Efficiently and Effectively.

Degree: 2014, University of Waterloo

 To assess the similarities and the differences among protein structures, a variety of structure alignment algorithms and programs have been designed and implemented. We introduce… (more)

Subjects/Keywords: Bioinformatics; Protein Structure Retrieval; Protein Structure Alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Cui, X. (2014). Finding Similar Protein Structures Efficiently and Effectively. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/8349

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Cui, Xuefeng. “Finding Similar Protein Structures Efficiently and Effectively.” 2014. Thesis, University of Waterloo. Accessed January 20, 2020. http://hdl.handle.net/10012/8349.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Cui, Xuefeng. “Finding Similar Protein Structures Efficiently and Effectively.” 2014. Web. 20 Jan 2020.

Vancouver:

Cui X. Finding Similar Protein Structures Efficiently and Effectively. [Internet] [Thesis]. University of Waterloo; 2014. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/10012/8349.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Cui X. Finding Similar Protein Structures Efficiently and Effectively. [Thesis]. University of Waterloo; 2014. Available from: http://hdl.handle.net/10012/8349

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Kansas

2. Sinha, Rohita. MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT.

Degree: PhD, Molecular Biosciences, 2011, University of Kansas

 Rapid accumulation of the experimental data on protein-protein complexes drives the paradigm shift in protein docking from "traditional" template free approaches to template based techniques.… (more)

Subjects/Keywords: Bioinformatics; Docking; Protein-protein interactions; Structure alignment; Template based modeling

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APA (6th Edition):

Sinha, R. (2011). MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT. (Doctoral Dissertation). University of Kansas. Retrieved from http://hdl.handle.net/1808/8197

Chicago Manual of Style (16th Edition):

Sinha, Rohita. “MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT.” 2011. Doctoral Dissertation, University of Kansas. Accessed January 20, 2020. http://hdl.handle.net/1808/8197.

MLA Handbook (7th Edition):

Sinha, Rohita. “MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT.” 2011. Web. 20 Jan 2020.

Vancouver:

Sinha R. MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT. [Internet] [Doctoral dissertation]. University of Kansas; 2011. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/1808/8197.

Council of Science Editors:

Sinha R. MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT. [Doctoral Dissertation]. University of Kansas; 2011. Available from: http://hdl.handle.net/1808/8197


Indian Institute of Science

3. Bhattacharya, Sourangshu. Computational Protein Structure Analysis : Kernel And Spectral Methods.

Degree: 2008, Indian Institute of Science

 The focus of this thesis is to develop computational techniques for analysis of protein structures. We model protein structures as points in 3-dimensional space which… (more)

Subjects/Keywords: Protein - Structure; Protein Structure - Data Processing; Protein Structure Alignment; Kernel Method; Structural Bioinformatics; Spectral Graph Theory; Machine Learning; Neighborhood Alignments; Structural Alignment; Protein Structure Classification; Bioinformatics

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APA (6th Edition):

Bhattacharya, S. (2008). Computational Protein Structure Analysis : Kernel And Spectral Methods. (Thesis). Indian Institute of Science. Retrieved from http://hdl.handle.net/2005/831

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Bhattacharya, Sourangshu. “Computational Protein Structure Analysis : Kernel And Spectral Methods.” 2008. Thesis, Indian Institute of Science. Accessed January 20, 2020. http://hdl.handle.net/2005/831.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Bhattacharya, Sourangshu. “Computational Protein Structure Analysis : Kernel And Spectral Methods.” 2008. Web. 20 Jan 2020.

Vancouver:

Bhattacharya S. Computational Protein Structure Analysis : Kernel And Spectral Methods. [Internet] [Thesis]. Indian Institute of Science; 2008. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/2005/831.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Bhattacharya S. Computational Protein Structure Analysis : Kernel And Spectral Methods. [Thesis]. Indian Institute of Science; 2008. Available from: http://hdl.handle.net/2005/831

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Missouri – Columbia

4. Deng, Xin. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.

Degree: 2013, University of Missouri – Columbia

Protein sequence and profile alignment has been used essentially in most bioinformatics tasks such as protein structure modeling, function prediction, and phylogenetic analysis. We designed… (more)

Subjects/Keywords: protein sequence alignment; solvent accessibility; protein structure prediction; protein model selection; Amino acid sequence; Solvents  – Analysis; Sequence alignment (Bioinformatics)

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APA (6th Edition):

Deng, X. (2013). Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. (Thesis). University of Missouri – Columbia. Retrieved from http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Thesis, University of Missouri – Columbia. Accessed January 20, 2020. http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Web. 20 Jan 2020.

Vancouver:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Internet] [Thesis]. University of Missouri – Columbia; 2013. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Thesis]. University of Missouri – Columbia; 2013. Available from: http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Windsor

5. Roy, Kaushik. Multiple Alignment of Structures using Center of Proteins.

Degree: MS, Computer Science, 2014, University of Windsor

  There is a buzz among structural biologists about conducting a major portion of their future work in silico, due to progressively refined computational tools… (more)

Subjects/Keywords: Center star method; Dynamic programming; Multiple protein structure alignment

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APA (6th Edition):

Roy, K. (2014). Multiple Alignment of Structures using Center of Proteins. (Masters Thesis). University of Windsor. Retrieved from http://scholar.uwindsor.ca/etd/5175

Chicago Manual of Style (16th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Masters Thesis, University of Windsor. Accessed January 20, 2020. http://scholar.uwindsor.ca/etd/5175.

MLA Handbook (7th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Web. 20 Jan 2020.

Vancouver:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Internet] [Masters thesis]. University of Windsor; 2014. [cited 2020 Jan 20]. Available from: http://scholar.uwindsor.ca/etd/5175.

Council of Science Editors:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Masters Thesis]. University of Windsor; 2014. Available from: http://scholar.uwindsor.ca/etd/5175


University of Windsor

6. Panigrahi, Satish Chandra. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.

Degree: PhD, Computer Science, 2014, University of Windsor

  The theme of this dissertation is geometric optimization and its applications. We study geometric proximity problems and several bioinformatics problems with a geometric content,… (more)

Subjects/Keywords: Computational geometry; Geometric proximity; Linear programming; Protein structure alignment

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APA (6th Edition):

Panigrahi, S. C. (2014). GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. (Doctoral Dissertation). University of Windsor. Retrieved from http://scholar.uwindsor.ca/etd/5198

Chicago Manual of Style (16th Edition):

Panigrahi, Satish Chandra. “GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.” 2014. Doctoral Dissertation, University of Windsor. Accessed January 20, 2020. http://scholar.uwindsor.ca/etd/5198.

MLA Handbook (7th Edition):

Panigrahi, Satish Chandra. “GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.” 2014. Web. 20 Jan 2020.

Vancouver:

Panigrahi SC. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. [Internet] [Doctoral dissertation]. University of Windsor; 2014. [cited 2020 Jan 20]. Available from: http://scholar.uwindsor.ca/etd/5198.

Council of Science Editors:

Panigrahi SC. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. [Doctoral Dissertation]. University of Windsor; 2014. Available from: http://scholar.uwindsor.ca/etd/5198


University of Western Ontario

7. Dickson, Russell J. Computational Molecular Coevolution.

Degree: 2013, University of Western Ontario

 A major goal in computational biochemistry is to obtain three-dimensional structure information from protein sequence. Coevolution represents a biological mechanism through which structural information can… (more)

Subjects/Keywords: Coevolution; multiple sequence alignment; protein structure prediction; local covariation; protein family curation; Mutual Information; Bioinformatics

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APA (6th Edition):

Dickson, R. J. (2013). Computational Molecular Coevolution. (Thesis). University of Western Ontario. Retrieved from https://ir.lib.uwo.ca/etd/1798

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Dickson, Russell J. “Computational Molecular Coevolution.” 2013. Thesis, University of Western Ontario. Accessed January 20, 2020. https://ir.lib.uwo.ca/etd/1798.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Dickson, Russell J. “Computational Molecular Coevolution.” 2013. Web. 20 Jan 2020.

Vancouver:

Dickson RJ. Computational Molecular Coevolution. [Internet] [Thesis]. University of Western Ontario; 2013. [cited 2020 Jan 20]. Available from: https://ir.lib.uwo.ca/etd/1798.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Dickson RJ. Computational Molecular Coevolution. [Thesis]. University of Western Ontario; 2013. Available from: https://ir.lib.uwo.ca/etd/1798

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


NSYSU

8. Cheng, Rei-Sing. Protein Structure Prediction Based on Secondary Structure Alignment.

Degree: Master, Computer Science and Engineering, 2003, NSYSU

 Sequence alignment is a basic but powerful technique in molecular biology. Macromolecular sequences (DNA, RNA and protein sequences) can be aligned based on some criteria.… (more)

Subjects/Keywords: prediction; structure; alignment; protein; secondary structure

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APA (6th Edition):

Cheng, R. (2003). Protein Structure Prediction Based on Secondary Structure Alignment. (Thesis). NSYSU. Retrieved from http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Cheng, Rei-Sing. “Protein Structure Prediction Based on Secondary Structure Alignment.” 2003. Thesis, NSYSU. Accessed January 20, 2020. http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Cheng, Rei-Sing. “Protein Structure Prediction Based on Secondary Structure Alignment.” 2003. Web. 20 Jan 2020.

Vancouver:

Cheng R. Protein Structure Prediction Based on Secondary Structure Alignment. [Internet] [Thesis]. NSYSU; 2003. [cited 2020 Jan 20]. Available from: http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Cheng R. Protein Structure Prediction Based on Secondary Structure Alignment. [Thesis]. NSYSU; 2003. Available from: http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Arizona State University

9. Ravichandran, Lakshminarayan. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.

Degree: PhD, Electrical Engineering, 2011, Arizona State University

 Genomic and proteomic sequences, which are in the form of deoxyribonucleic acid (DNA) and amino acids respectively, play a vital role in the structure, function… (more)

Subjects/Keywords: Engineering; Bioinformatics; Molecular Biology; chirp signal; classification; DNA sequence alignment; Gaussian signal; protein structure alignment; querying

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APA (6th Edition):

Ravichandran, L. (2011). Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. (Doctoral Dissertation). Arizona State University. Retrieved from http://repository.asu.edu/items/9483

Chicago Manual of Style (16th Edition):

Ravichandran, Lakshminarayan. “Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.” 2011. Doctoral Dissertation, Arizona State University. Accessed January 20, 2020. http://repository.asu.edu/items/9483.

MLA Handbook (7th Edition):

Ravichandran, Lakshminarayan. “Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.” 2011. Web. 20 Jan 2020.

Vancouver:

Ravichandran L. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. [Internet] [Doctoral dissertation]. Arizona State University; 2011. [cited 2020 Jan 20]. Available from: http://repository.asu.edu/items/9483.

Council of Science Editors:

Ravichandran L. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. [Doctoral Dissertation]. Arizona State University; 2011. Available from: http://repository.asu.edu/items/9483


University of Cincinnati

10. SUBRAMANIAN, SUCHITHA. PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL.

Degree: MS, Engineering : Computer Science, 2007, University of Cincinnati

 Currently many researchers are working on comparing proteins by aligning their sequences of amino acids. But the structural alignment of proteins is very important. This… (more)

Subjects/Keywords: Computer Science; Protein structure alignment; Euclidean Distance; coordinates of alpha-carbon atoms

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APA (6th Edition):

SUBRAMANIAN, S. (2007). PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL. (Masters Thesis). University of Cincinnati. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691

Chicago Manual of Style (16th Edition):

SUBRAMANIAN, SUCHITHA. “PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL.” 2007. Masters Thesis, University of Cincinnati. Accessed January 20, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691.

MLA Handbook (7th Edition):

SUBRAMANIAN, SUCHITHA. “PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL.” 2007. Web. 20 Jan 2020.

Vancouver:

SUBRAMANIAN S. PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL. [Internet] [Masters thesis]. University of Cincinnati; 2007. [cited 2020 Jan 20]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691.

Council of Science Editors:

SUBRAMANIAN S. PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL. [Masters Thesis]. University of Cincinnati; 2007. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691


Northeastern University

11. Leslin, Chesley. Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis.

Degree: PhD, Department of Biology, 2010, Northeastern University

 Until recently non-sequential alignments were poorly recognized and the significance of their existence remained unresolved. Here I present findings from a comprehensive study which reveals… (more)

Subjects/Keywords: bioinformatics; non-sequential alignments; PDB; protein structure comparison; structure alignment; TOPOFIT; Proteins - Classification - Databases; Biology; Databases and Information Systems

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APA (6th Edition):

Leslin, C. (2010). Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis. (Doctoral Dissertation). Northeastern University. Retrieved from http://hdl.handle.net/2047/d20000125

Chicago Manual of Style (16th Edition):

Leslin, Chesley. “Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis.” 2010. Doctoral Dissertation, Northeastern University. Accessed January 20, 2020. http://hdl.handle.net/2047/d20000125.

MLA Handbook (7th Edition):

Leslin, Chesley. “Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis.” 2010. Web. 20 Jan 2020.

Vancouver:

Leslin C. Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis. [Internet] [Doctoral dissertation]. Northeastern University; 2010. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/2047/d20000125.

Council of Science Editors:

Leslin C. Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis. [Doctoral Dissertation]. Northeastern University; 2010. Available from: http://hdl.handle.net/2047/d20000125


Queens University

12. Ahmed, Hazem Radwan A. Pattern Discovery in Protein Structures and Interaction Networks .

Degree: Computing, 2014, Queens University

 Pattern discovery in protein structures is a fundamental task in computational biology, with important applications in protein structure prediction, profiling and alignment. We propose a… (more)

Subjects/Keywords: 3D Structural Motif Matching; Protein Structure Classification; Protein Structure Alignment; Protein Interaction Networks; Protein-Protein Interaction Prediction; Multi-Start Particle Swarm Optimization; Fitness-based Agile Restart; Efficient Stagnation Detection; Proteomic Pattern Matching and Discovery; Protein Contact Maps

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APA (6th Edition):

Ahmed, H. R. A. (2014). Pattern Discovery in Protein Structures and Interaction Networks . (Thesis). Queens University. Retrieved from http://hdl.handle.net/1974/12051

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Ahmed, Hazem Radwan A. “Pattern Discovery in Protein Structures and Interaction Networks .” 2014. Thesis, Queens University. Accessed January 20, 2020. http://hdl.handle.net/1974/12051.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Ahmed, Hazem Radwan A. “Pattern Discovery in Protein Structures and Interaction Networks .” 2014. Web. 20 Jan 2020.

Vancouver:

Ahmed HRA. Pattern Discovery in Protein Structures and Interaction Networks . [Internet] [Thesis]. Queens University; 2014. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/1974/12051.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Ahmed HRA. Pattern Discovery in Protein Structures and Interaction Networks . [Thesis]. Queens University; 2014. Available from: http://hdl.handle.net/1974/12051

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Universitat Pompeu Fabra

13. Kemena, Carsten, 1983-. Improving the accuracy and the efficiency of multiple sequence alignment methods.

Degree: Departament de Ciències Experimentals i de la Salut, 2012, Universitat Pompeu Fabra

 El alineamiento es uno de los métodos básicos en la comparación de secuencias biológicas, y a menudo el primer pasó en análisis posteriores. Por su… (more)

Subjects/Keywords: Bioinformatics; Multiple sequence alignment; Alignment evaluation; Large-scale alignment; Protein structure; RNA structure; Bioinformática; Alineamiento múltiple de secuencias; Evaluación de alineamientos; Alineamientos múltiples de secuencia a gran escala; Estructura de proteínas; Estructura de ARN; 577

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APA (6th Edition):

Kemena, Carsten, 1. (2012). Improving the accuracy and the efficiency of multiple sequence alignment methods. (Thesis). Universitat Pompeu Fabra. Retrieved from http://hdl.handle.net/10803/128678

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Kemena, Carsten, 1983-. “Improving the accuracy and the efficiency of multiple sequence alignment methods.” 2012. Thesis, Universitat Pompeu Fabra. Accessed January 20, 2020. http://hdl.handle.net/10803/128678.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Kemena, Carsten, 1983-. “Improving the accuracy and the efficiency of multiple sequence alignment methods.” 2012. Web. 20 Jan 2020.

Vancouver:

Kemena, Carsten 1. Improving the accuracy and the efficiency of multiple sequence alignment methods. [Internet] [Thesis]. Universitat Pompeu Fabra; 2012. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/10803/128678.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Kemena, Carsten 1. Improving the accuracy and the efficiency of multiple sequence alignment methods. [Thesis]. Universitat Pompeu Fabra; 2012. Available from: http://hdl.handle.net/10803/128678

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brno University of Technology

14. Trlica, Jiří. Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů .

Degree: 2013, Brno University of Technology

 Porovnání trojrozměrných struktur proteinů má zásadní význam pro molekulární biologii. Jedním z nejvýznamnějších je možnost odvodit funkci neznámého proteinu od strukturně podobného proteinu, jehož funkce… (more)

Subjects/Keywords: Aminokyselina; proteinové struktury; zarovnání proteinových struktur; porovnání proteinových foldů; software pro strukturní zarovnání; DALI; LOCK; MUSTANG; SPALIGN; CLICK; ROC.; Amino acid; protein structures; protein structure alignment; protein fold comparison; structural alignment software; DALI; LOCK; MUSTANG; SPALIGN; CLICK; ROC.

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APA (6th Edition):

Trlica, J. (2013). Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů . (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/54854

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Trlica, Jiří. “Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů .” 2013. Thesis, Brno University of Technology. Accessed January 20, 2020. http://hdl.handle.net/11012/54854.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Trlica, Jiří. “Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů .” 2013. Web. 20 Jan 2020.

Vancouver:

Trlica J. Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů . [Internet] [Thesis]. Brno University of Technology; 2013. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/11012/54854.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Trlica J. Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů . [Thesis]. Brno University of Technology; 2013. Available from: http://hdl.handle.net/11012/54854

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


The Ohio State University

15. Ozer, Hatice Gulcin. Residue Associations In Protein Family Alignments.

Degree: PhD, Biophysics, 2008, The Ohio State University

  The increasing amount of data on biomolecule sequences and their multiple alignments for families, has promoted an interest in discovering structural and functional characteristics… (more)

Subjects/Keywords: Bioinformatics; Biophysics; Family Alignment; Positional Dependency; Amino Acid Correlation; Residue Correlation; Residue Association; Protein Sequence; Protein Structure; Pfam database; Bioinformatics; Fisher Exact test; Phi coefficient

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APA (6th Edition):

Ozer, H. G. (2008). Residue Associations In Protein Family Alignments. (Doctoral Dissertation). The Ohio State University. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026

Chicago Manual of Style (16th Edition):

Ozer, Hatice Gulcin. “Residue Associations In Protein Family Alignments.” 2008. Doctoral Dissertation, The Ohio State University. Accessed January 20, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026.

MLA Handbook (7th Edition):

Ozer, Hatice Gulcin. “Residue Associations In Protein Family Alignments.” 2008. Web. 20 Jan 2020.

Vancouver:

Ozer HG. Residue Associations In Protein Family Alignments. [Internet] [Doctoral dissertation]. The Ohio State University; 2008. [cited 2020 Jan 20]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026.

Council of Science Editors:

Ozer HG. Residue Associations In Protein Family Alignments. [Doctoral Dissertation]. The Ohio State University; 2008. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026


University of Waterloo

16. Hui, Shirley. FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach.

Degree: 2005, University of Waterloo

 A topic of research that is frequently studied in Structural Biology is the problem of determining the degree of similarity between two protein structures. The… (more)

Subjects/Keywords: Computer Science; dimensionality reduction; flexible protein structural alignment; protein structure; principal component analysis

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APA (6th Edition):

Hui, S. (2005). FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/1173

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Hui, Shirley. “FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach.” 2005. Thesis, University of Waterloo. Accessed January 20, 2020. http://hdl.handle.net/10012/1173.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Hui, Shirley. “FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach.” 2005. Web. 20 Jan 2020.

Vancouver:

Hui S. FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach. [Internet] [Thesis]. University of Waterloo; 2005. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/10012/1173.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Hui S. FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach. [Thesis]. University of Waterloo; 2005. Available from: http://hdl.handle.net/10012/1173

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Freie Universität Berlin

17. Gürler, Aysam. Strategien für die strukturbasierte Analyse der Proteinfunktionalität.

Degree: 2009, Freie Universität Berlin

 In dieser Arbeit werden die Entwicklung und die Ergebnisse der nicht- sequentiellen Proteinstrukturüberlagerungsmethode GANGSTA+ vorgestellt. Die Methode löst das Strukturüberlagerungsproblem stufenweise und bestimmt zu Anfang… (more)

Subjects/Keywords: nonsequential protein structure alignment; novel protein fold; protein fold space; protein structure/folding; 500 Naturwissenschaften und Mathematik::540 Chemie::548 Kristallografie

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APA (6th Edition):

Gürler, A. (2009). Strategien für die strukturbasierte Analyse der Proteinfunktionalität. (Thesis). Freie Universität Berlin. Retrieved from https://refubium.fu-berlin.de/handle/fub188/11604

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Gürler, Aysam. “Strategien für die strukturbasierte Analyse der Proteinfunktionalität.” 2009. Thesis, Freie Universität Berlin. Accessed January 20, 2020. https://refubium.fu-berlin.de/handle/fub188/11604.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Gürler, Aysam. “Strategien für die strukturbasierte Analyse der Proteinfunktionalität.” 2009. Web. 20 Jan 2020.

Vancouver:

Gürler A. Strategien für die strukturbasierte Analyse der Proteinfunktionalität. [Internet] [Thesis]. Freie Universität Berlin; 2009. [cited 2020 Jan 20]. Available from: https://refubium.fu-berlin.de/handle/fub188/11604.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Gürler A. Strategien für die strukturbasierte Analyse der Proteinfunktionalität. [Thesis]. Freie Universität Berlin; 2009. Available from: https://refubium.fu-berlin.de/handle/fub188/11604

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of New Orleans

18. Zhao, Zhiyu. Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison.

Degree: PhD, Computer Science, 2008, University of New Orleans

 Sequence analysis and structure analysis are two of the fundamental areas of bioinformatics research. This dissertation discusses, specifically, protein structure related problems including protein structure(more)

Subjects/Keywords: Sequence Analysis; Structure Analysis; Protein Structure Alignment; Protein Structure Query; Haplotype Reconstruction and Genome Rearrangement

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APA (6th Edition):

Zhao, Z. (2008). Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison. (Doctoral Dissertation). University of New Orleans. Retrieved from https://scholarworks.uno.edu/td/851

Chicago Manual of Style (16th Edition):

Zhao, Zhiyu. “Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison.” 2008. Doctoral Dissertation, University of New Orleans. Accessed January 20, 2020. https://scholarworks.uno.edu/td/851.

MLA Handbook (7th Edition):

Zhao, Zhiyu. “Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison.” 2008. Web. 20 Jan 2020.

Vancouver:

Zhao Z. Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison. [Internet] [Doctoral dissertation]. University of New Orleans; 2008. [cited 2020 Jan 20]. Available from: https://scholarworks.uno.edu/td/851.

Council of Science Editors:

Zhao Z. Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison. [Doctoral Dissertation]. University of New Orleans; 2008. Available from: https://scholarworks.uno.edu/td/851

19. Panigrahi, Satish Chandra. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.

Degree: PhD, Computer Science, 2014, University of Windsor

  The theme of this dissertation is geometric optimization and its applications. We study geometric proximity problems and several bioinformatics problems with a geometric content,… (more)

Subjects/Keywords: Computational geometry; Geometric proximity; Linear programming; Protein structure alignment

…for pairwise protein structure alignment. EDAlignres identifies the best structural… …123 An eigendecomposition method for protein structure alignment . 124 5.1 Overview… …to the problem of 3 protein structure similarity. The alignment of two protein… …optimization perspective, the protein structure alignment problem can be viewed as a point pattern… …new algorithms, EDAlignres and EDAlignsse , for pairwise protein structure alignment. (… 

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APA (6th Edition):

Panigrahi, S. C. (2014). GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. (Doctoral Dissertation). University of Windsor. Retrieved from https://scholar.uwindsor.ca/etd/5198

Chicago Manual of Style (16th Edition):

Panigrahi, Satish Chandra. “GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.” 2014. Doctoral Dissertation, University of Windsor. Accessed January 20, 2020. https://scholar.uwindsor.ca/etd/5198.

MLA Handbook (7th Edition):

Panigrahi, Satish Chandra. “GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.” 2014. Web. 20 Jan 2020.

Vancouver:

Panigrahi SC. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. [Internet] [Doctoral dissertation]. University of Windsor; 2014. [cited 2020 Jan 20]. Available from: https://scholar.uwindsor.ca/etd/5198.

Council of Science Editors:

Panigrahi SC. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. [Doctoral Dissertation]. University of Windsor; 2014. Available from: https://scholar.uwindsor.ca/etd/5198

20. Roy, Kaushik. Multiple Alignment of Structures using Center of Proteins.

Degree: MS, Computer Science, 2014, University of Windsor

  There is a buzz among structural biologists about conducting a major portion of their future work in silico, due to progressively refined computational tools… (more)

Subjects/Keywords: Center star method; Dynamic programming; Multiple protein structure alignment

…Motivation There are two main classes of applications for multiple protein structure alignment: 1… …protein families based on both structure and sequence. Here too, we use multiple alignment of… …Alignment . . . . . . . . . . . . . . . . . . 21 2.3 Structure Alignment… …protein structures. Each structure is represented by the coordinates of their alpha carbon (… …structure, for i = 1 ... N and j = 1 ... Li . A multiple structural alignment of P is X = (… 

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APA (6th Edition):

Roy, K. (2014). Multiple Alignment of Structures using Center of Proteins. (Masters Thesis). University of Windsor. Retrieved from https://scholar.uwindsor.ca/etd/5175

Chicago Manual of Style (16th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Masters Thesis, University of Windsor. Accessed January 20, 2020. https://scholar.uwindsor.ca/etd/5175.

MLA Handbook (7th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Web. 20 Jan 2020.

Vancouver:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Internet] [Masters thesis]. University of Windsor; 2014. [cited 2020 Jan 20]. Available from: https://scholar.uwindsor.ca/etd/5175.

Council of Science Editors:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Masters Thesis]. University of Windsor; 2014. Available from: https://scholar.uwindsor.ca/etd/5175


Freie Universität Berlin

21. Schmidt-Gönner, Tobias. A new protein structure alignment method and its application to circular permuted proteins.

Degree: 2010, Freie Universität Berlin

 In this work, GANGSTA, a non-sequentially working protein structure alignment tool, was introduced and his successor GANGSTA+ was shortly discussed. It has been shown that… (more)

Subjects/Keywords: GANGSTA; 3D structure; protein alignment tool; evolution; circular permutation;

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Schmidt-Gönner, T. (2010). A new protein structure alignment method and its application to circular permuted proteins. (Thesis). Freie Universität Berlin. Retrieved from http://dx.doi.org/10.17169/refubium-12043

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Schmidt-Gönner, Tobias. “A new protein structure alignment method and its application to circular permuted proteins.” 2010. Thesis, Freie Universität Berlin. Accessed January 20, 2020. http://dx.doi.org/10.17169/refubium-12043.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Schmidt-Gönner, Tobias. “A new protein structure alignment method and its application to circular permuted proteins.” 2010. Web. 20 Jan 2020.

Vancouver:

Schmidt-Gönner T. A new protein structure alignment method and its application to circular permuted proteins. [Internet] [Thesis]. Freie Universität Berlin; 2010. [cited 2020 Jan 20]. Available from: http://dx.doi.org/10.17169/refubium-12043.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Schmidt-Gönner T. A new protein structure alignment method and its application to circular permuted proteins. [Thesis]. Freie Universität Berlin; 2010. Available from: http://dx.doi.org/10.17169/refubium-12043

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

22. YAO ZHEN. Finding all maximal common substructures in proteins.

Degree: 2005, National University of Singapore

Subjects/Keywords: Protein 3D structure; common substructure; secondary structure element (SSE); non-topological; structural alignment; RMSD

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APA (6th Edition):

ZHEN, Y. (2005). Finding all maximal common substructures in proteins. (Thesis). National University of Singapore. Retrieved from http://scholarbank.nus.edu.sg/handle/10635/14734

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

ZHEN, YAO. “Finding all maximal common substructures in proteins.” 2005. Thesis, National University of Singapore. Accessed January 20, 2020. http://scholarbank.nus.edu.sg/handle/10635/14734.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

ZHEN, YAO. “Finding all maximal common substructures in proteins.” 2005. Web. 20 Jan 2020.

Vancouver:

ZHEN Y. Finding all maximal common substructures in proteins. [Internet] [Thesis]. National University of Singapore; 2005. [cited 2020 Jan 20]. Available from: http://scholarbank.nus.edu.sg/handle/10635/14734.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

ZHEN Y. Finding all maximal common substructures in proteins. [Thesis]. National University of Singapore; 2005. Available from: http://scholarbank.nus.edu.sg/handle/10635/14734

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Waterloo

23. Lee, En-Shiun Annie. Training of Template-Specific Weighted Energy Function for Sequence-to-Structure Alignment.

Degree: 2008, University of Waterloo

 Threading is a protein structure prediction method that uses a library of template protein structures in the following steps: first the target sequence is matched… (more)

Subjects/Keywords: Bioinformatics; Protein Structure Prediction; Comparative Modelling; Energy Function; Sequence-to-Structure Alignment; Template Selection; Threading; Machine Learning; Weighted Linear Least Squares

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APA (6th Edition):

Lee, E. A. (2008). Training of Template-Specific Weighted Energy Function for Sequence-to-Structure Alignment. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/4060

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Lee, En-Shiun Annie. “Training of Template-Specific Weighted Energy Function for Sequence-to-Structure Alignment.” 2008. Thesis, University of Waterloo. Accessed January 20, 2020. http://hdl.handle.net/10012/4060.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Lee, En-Shiun Annie. “Training of Template-Specific Weighted Energy Function for Sequence-to-Structure Alignment.” 2008. Web. 20 Jan 2020.

Vancouver:

Lee EA. Training of Template-Specific Weighted Energy Function for Sequence-to-Structure Alignment. [Internet] [Thesis]. University of Waterloo; 2008. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/10012/4060.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Lee EA. Training of Template-Specific Weighted Energy Function for Sequence-to-Structure Alignment. [Thesis]. University of Waterloo; 2008. Available from: http://hdl.handle.net/10012/4060

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

24. Sun, Hong. DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT.

Degree: PhD, Computer Science and Engineering, 2011, The Ohio State University

  In the thesis, we focus on developing frameworks to comparing and aligning multiple geometric shape data. In particular, the research covers two main subjects:… (more)

Subjects/Keywords: Bioinformatics; Computer Engineering; Computer Science; multiple; protein; structure; alignment; folding; trajectory; Smolign; EPO

…multiple protein structure alignment. More specifically we introduced a framework, namely Smolign… …10 2.1 Principle of Protein Structure . . . . . . 2.1.1 Overview… …2.1.2 Protein Structure Hierarchy . . 2.1.2.1 Primary Structure . . . . 2.1.2.2 Secondary… …Structure . . . 2.1.2.3 Tertiary Structure . . . . 2.1.2.4 Quaternary Structure . . 2.2 Protein… …3.2 Protein Structure Data Modeling . . . . . . . . . . . . . 3.2.1 Geometric Vector… 

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APA (6th Edition):

Sun, H. (2011). DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT. (Doctoral Dissertation). The Ohio State University. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262

Chicago Manual of Style (16th Edition):

Sun, Hong. “DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT.” 2011. Doctoral Dissertation, The Ohio State University. Accessed January 20, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262.

MLA Handbook (7th Edition):

Sun, Hong. “DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT.” 2011. Web. 20 Jan 2020.

Vancouver:

Sun H. DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT. [Internet] [Doctoral dissertation]. The Ohio State University; 2011. [cited 2020 Jan 20]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262.

Council of Science Editors:

Sun H. DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT. [Doctoral Dissertation]. The Ohio State University; 2011. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262


Freie Universität Berlin

25. May, Patrick. Proteinstrukturanalyse unter Verwendung von Kontaktmatrizen und Sekundärstruktur.

Degree: 2007, Freie Universität Berlin

 Eine der größten Herausforderungen der Bioinformatik in der post-genomischen Ära zu Beginn des neuen Jahrtausends besteht in der Erforschung von evolutionären Zusammenhängen zwischen Proteinstrukturen. Eine… (more)

Subjects/Keywords: protein structure alignment; graph theory; 500 Naturwissenschaften und Mathematik::540 Chemie::540 Chemie und zugeordnete Wissenschaften

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APA (6th Edition):

May, P. (2007). Proteinstrukturanalyse unter Verwendung von Kontaktmatrizen und Sekundärstruktur. (Thesis). Freie Universität Berlin. Retrieved from http://dx.doi.org/10.17169/refubium-14369

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

May, Patrick. “Proteinstrukturanalyse unter Verwendung von Kontaktmatrizen und Sekundärstruktur.” 2007. Thesis, Freie Universität Berlin. Accessed January 20, 2020. http://dx.doi.org/10.17169/refubium-14369.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

May, Patrick. “Proteinstrukturanalyse unter Verwendung von Kontaktmatrizen und Sekundärstruktur.” 2007. Web. 20 Jan 2020.

Vancouver:

May P. Proteinstrukturanalyse unter Verwendung von Kontaktmatrizen und Sekundärstruktur. [Internet] [Thesis]. Freie Universität Berlin; 2007. [cited 2020 Jan 20]. Available from: http://dx.doi.org/10.17169/refubium-14369.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

May P. Proteinstrukturanalyse unter Verwendung von Kontaktmatrizen und Sekundärstruktur. [Thesis]. Freie Universität Berlin; 2007. Available from: http://dx.doi.org/10.17169/refubium-14369

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Vrije Universiteit Amsterdam

26. Pirovano, W.A. Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features .

Degree: 2010, Vrije Universiteit Amsterdam

Subjects/Keywords: Comparing building blocks of life: evaluation of predicted structural and functional features; Multiple sequence alignment; protein sequence analysis; protein structure prediction; protein function prediction; transmembrane proteins; protein subfamilies; specificity determining residues;

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APA (6th Edition):

Pirovano, W. A. (2010). Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features . (Doctoral Dissertation). Vrije Universiteit Amsterdam. Retrieved from http://hdl.handle.net/1871/15597

Chicago Manual of Style (16th Edition):

Pirovano, W A. “Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features .” 2010. Doctoral Dissertation, Vrije Universiteit Amsterdam. Accessed January 20, 2020. http://hdl.handle.net/1871/15597.

MLA Handbook (7th Edition):

Pirovano, W A. “Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features .” 2010. Web. 20 Jan 2020.

Vancouver:

Pirovano WA. Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features . [Internet] [Doctoral dissertation]. Vrije Universiteit Amsterdam; 2010. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/1871/15597.

Council of Science Editors:

Pirovano WA. Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features . [Doctoral Dissertation]. Vrije Universiteit Amsterdam; 2010. Available from: http://hdl.handle.net/1871/15597


University of Florida

27. Gates, Ami. State-of-the-Art Protein Secondary-Structure Prediction Using a Novel Two-Stage Alignment and Machine-Learning Method.

Degree: PhD, Computer Engineering - Computer and Information Science and Engineering, 2008, University of Florida

 While the complexity of biological systems often appears intractable, living organisms possess an underlying correlation derived from their hierarchical association. This notion enables methods such… (more)

Subjects/Keywords: Amino acids; Blasts; Databases; Datasets; Machine learning; Mathematical vectors; Matrices; Neural networks; Proteins; Sequence alignment; machine, prediction, protein, secondary, structure, support, vector

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APA (6th Edition):

Gates, A. (2008). State-of-the-Art Protein Secondary-Structure Prediction Using a Novel Two-Stage Alignment and Machine-Learning Method. (Doctoral Dissertation). University of Florida. Retrieved from http://ufdc.ufl.edu/UFE0023862

Chicago Manual of Style (16th Edition):

Gates, Ami. “State-of-the-Art Protein Secondary-Structure Prediction Using a Novel Two-Stage Alignment and Machine-Learning Method.” 2008. Doctoral Dissertation, University of Florida. Accessed January 20, 2020. http://ufdc.ufl.edu/UFE0023862.

MLA Handbook (7th Edition):

Gates, Ami. “State-of-the-Art Protein Secondary-Structure Prediction Using a Novel Two-Stage Alignment and Machine-Learning Method.” 2008. Web. 20 Jan 2020.

Vancouver:

Gates A. State-of-the-Art Protein Secondary-Structure Prediction Using a Novel Two-Stage Alignment and Machine-Learning Method. [Internet] [Doctoral dissertation]. University of Florida; 2008. [cited 2020 Jan 20]. Available from: http://ufdc.ufl.edu/UFE0023862.

Council of Science Editors:

Gates A. State-of-the-Art Protein Secondary-Structure Prediction Using a Novel Two-Stage Alignment and Machine-Learning Method. [Doctoral Dissertation]. University of Florida; 2008. Available from: http://ufdc.ufl.edu/UFE0023862


Brno University of Technology

28. Tuček, Jaroslav. Předpovídání struktury proteinů .

Degree: 2009, Brno University of Technology

 Práce popisuje prostorovou strukturu molekul bílkovin a databází uchovávajících representace této struktury, či její hierarchické klasifikace. Je poskytnut přehled současných metod výpočetní predikce struktury bílkovin,… (more)

Subjects/Keywords: Bílkovina; struktura; klasifikace; PDB; predikce; komparativní modelování; ab initio modelování; threading; fragmentová metoda; zarovnání; Protein; structure; classification; PDB; prediction; comparative modeling; ab initio modeling; threading; fragment methods; alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Tuček, J. (2009). Předpovídání struktury proteinů . (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/53875

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Tuček, Jaroslav. “Předpovídání struktury proteinů .” 2009. Thesis, Brno University of Technology. Accessed January 20, 2020. http://hdl.handle.net/11012/53875.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Tuček, Jaroslav. “Předpovídání struktury proteinů .” 2009. Web. 20 Jan 2020.

Vancouver:

Tuček J. Předpovídání struktury proteinů . [Internet] [Thesis]. Brno University of Technology; 2009. [cited 2020 Jan 20]. Available from: http://hdl.handle.net/11012/53875.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Tuček J. Předpovídání struktury proteinů . [Thesis]. Brno University of Technology; 2009. Available from: http://hdl.handle.net/11012/53875

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

29. Leila de Fátima Sousa Carvalho. BLOOM BLAST Object Oriented Management: uma solução integrada para gerenciamento dos resultados do BLAST por meio de um paradigma orientado a objetos.

Degree: 2003, Universidade Católica de Brasilia

Considerada uma disciplina especial desde o início dos anos 80, a bioinformática pode ser definida como uma modalidade que abrange todos os aspectos de aquisição,… (more)

Subjects/Keywords: CIENCIA DA COMPUTACAO; projeto genoma; estrutura secundária de proteína; árvore filogenética; FAST; BLAST; BLOSUM; comparação de seqüências; PAM; programação dinâmica; métodos de alinhamento de seqüências; proteína; RNA; DNA; biologia molecular computacional; bioinformática; protein secondary structure; FAST; BLAST; BLOSUM; PAM; dynamic programming; sequence alignment methods; sequence comparison; protein; RNA; computational molecular biology; DNA; bioinformatics; phylogenetic tree; genome project; CIENCIA DA COMPUTACAO

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Carvalho, L. d. F. S. (2003). BLOOM BLAST Object Oriented Management: uma solução integrada para gerenciamento dos resultados do BLAST por meio de um paradigma orientado a objetos. (Masters Thesis). Universidade Católica de Brasilia. Retrieved from http://www.bdtd.ucb.br/tede/tde_busca/arquivo.php?codArquivo=5

Chicago Manual of Style (16th Edition):

Carvalho, Leila de Fátima Sousa. “BLOOM BLAST Object Oriented Management: uma solução integrada para gerenciamento dos resultados do BLAST por meio de um paradigma orientado a objetos.” 2003. Masters Thesis, Universidade Católica de Brasilia. Accessed January 20, 2020. http://www.bdtd.ucb.br/tede/tde_busca/arquivo.php?codArquivo=5.

MLA Handbook (7th Edition):

Carvalho, Leila de Fátima Sousa. “BLOOM BLAST Object Oriented Management: uma solução integrada para gerenciamento dos resultados do BLAST por meio de um paradigma orientado a objetos.” 2003. Web. 20 Jan 2020.

Vancouver:

Carvalho LdFS. BLOOM BLAST Object Oriented Management: uma solução integrada para gerenciamento dos resultados do BLAST por meio de um paradigma orientado a objetos. [Internet] [Masters thesis]. Universidade Católica de Brasilia; 2003. [cited 2020 Jan 20]. Available from: http://www.bdtd.ucb.br/tede/tde_busca/arquivo.php?codArquivo=5.

Council of Science Editors:

Carvalho LdFS. BLOOM BLAST Object Oriented Management: uma solução integrada para gerenciamento dos resultados do BLAST por meio de um paradigma orientado a objetos. [Masters Thesis]. Universidade Católica de Brasilia; 2003. Available from: http://www.bdtd.ucb.br/tede/tde_busca/arquivo.php?codArquivo=5

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