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You searched for subject:(Protein flexibility). Showing records 1 – 29 of 29 total matches.

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University of Michigan

1. Clark, Jordan. Structural Investigation of Binding Events in Proteins.

Degree: PhD, Medicinal Chemistry, 2018, University of Michigan

 Understanding the biophysical properties that describe protein binding events has allowed for the advancement of drug discovery through structure-based drug design and in silico methodology.… (more)

Subjects/Keywords: Protein flexibility; Protein structure database; Protein-ligand binding; Protein-protein interaction (PPI); Biological Chemistry; Science

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APA (6th Edition):

Clark, J. (2018). Structural Investigation of Binding Events in Proteins. (Doctoral Dissertation). University of Michigan. Retrieved from http://hdl.handle.net/2027.42/145943

Chicago Manual of Style (16th Edition):

Clark, Jordan. “Structural Investigation of Binding Events in Proteins.” 2018. Doctoral Dissertation, University of Michigan. Accessed June 20, 2019. http://hdl.handle.net/2027.42/145943.

MLA Handbook (7th Edition):

Clark, Jordan. “Structural Investigation of Binding Events in Proteins.” 2018. Web. 20 Jun 2019.

Vancouver:

Clark J. Structural Investigation of Binding Events in Proteins. [Internet] [Doctoral dissertation]. University of Michigan; 2018. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/2027.42/145943.

Council of Science Editors:

Clark J. Structural Investigation of Binding Events in Proteins. [Doctoral Dissertation]. University of Michigan; 2018. Available from: http://hdl.handle.net/2027.42/145943


University of Colorado

2. Eskow, Elizabeth. A Novel Method for Characterization and Quantification of Flexibility and Mobility in Proteins.

Degree: PhD, Computer Science, 2014, University of Colorado

  Proteins in vivo are not completely rigid molecules, and mobilities within their structure play a key role in protein function. We discuss a novel… (more)

Subjects/Keywords: Protein Flexibility; Protein Mobility; Protein Shape Pliability; Protein Structure; Biochemistry; Bioinformatics; Computer Sciences

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APA (6th Edition):

Eskow, E. (2014). A Novel Method for Characterization and Quantification of Flexibility and Mobility in Proteins. (Doctoral Dissertation). University of Colorado. Retrieved from http://scholar.colorado.edu/csci_gradetds/82

Chicago Manual of Style (16th Edition):

Eskow, Elizabeth. “A Novel Method for Characterization and Quantification of Flexibility and Mobility in Proteins.” 2014. Doctoral Dissertation, University of Colorado. Accessed June 20, 2019. http://scholar.colorado.edu/csci_gradetds/82.

MLA Handbook (7th Edition):

Eskow, Elizabeth. “A Novel Method for Characterization and Quantification of Flexibility and Mobility in Proteins.” 2014. Web. 20 Jun 2019.

Vancouver:

Eskow E. A Novel Method for Characterization and Quantification of Flexibility and Mobility in Proteins. [Internet] [Doctoral dissertation]. University of Colorado; 2014. [cited 2019 Jun 20]. Available from: http://scholar.colorado.edu/csci_gradetds/82.

Council of Science Editors:

Eskow E. A Novel Method for Characterization and Quantification of Flexibility and Mobility in Proteins. [Doctoral Dissertation]. University of Colorado; 2014. Available from: http://scholar.colorado.edu/csci_gradetds/82


Lehigh University

3. Guo, Ziyi. Leveraging Structural Flexibility to Predict Protein Function.

Degree: PhD, Computer Science, 2017, Lehigh University

 Proteins are essentially versatile and flexible molecules and understanding protein function plays a fundamental role in understanding biological systems. Protein structure comparisons are widely used… (more)

Subjects/Keywords: machine learning; molecular dynamics; protein flexibility; protein structure comparison; Computer Sciences

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APA (6th Edition):

Guo, Z. (2017). Leveraging Structural Flexibility to Predict Protein Function. (Doctoral Dissertation). Lehigh University. Retrieved from https://preserve.lehigh.edu/etd/2945

Chicago Manual of Style (16th Edition):

Guo, Ziyi. “Leveraging Structural Flexibility to Predict Protein Function.” 2017. Doctoral Dissertation, Lehigh University. Accessed June 20, 2019. https://preserve.lehigh.edu/etd/2945.

MLA Handbook (7th Edition):

Guo, Ziyi. “Leveraging Structural Flexibility to Predict Protein Function.” 2017. Web. 20 Jun 2019.

Vancouver:

Guo Z. Leveraging Structural Flexibility to Predict Protein Function. [Internet] [Doctoral dissertation]. Lehigh University; 2017. [cited 2019 Jun 20]. Available from: https://preserve.lehigh.edu/etd/2945.

Council of Science Editors:

Guo Z. Leveraging Structural Flexibility to Predict Protein Function. [Doctoral Dissertation]. Lehigh University; 2017. Available from: https://preserve.lehigh.edu/etd/2945


University of California – San Francisco

4. Ollikainen, Noah. Novel Algorithms and Benchmarks for Computational Protein Design.

Degree: Biological and Medical Informatics, 2014, University of California – San Francisco

 Computational protein design aims to predict protein sequences that will fold into a given three-dimensional structure and perform a desired function. Though significant accomplishments in… (more)

Subjects/Keywords: Bioinformatics; Biophysics; Algorithms; Backbone Flexibility; Benchmarks; Computational Protein Design; Protein Evolution; Protein Structure

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APA (6th Edition):

Ollikainen, N. (2014). Novel Algorithms and Benchmarks for Computational Protein Design. (Thesis). University of California – San Francisco. Retrieved from http://www.escholarship.org/uc/item/21p932jz

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Ollikainen, Noah. “Novel Algorithms and Benchmarks for Computational Protein Design.” 2014. Thesis, University of California – San Francisco. Accessed June 20, 2019. http://www.escholarship.org/uc/item/21p932jz.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Ollikainen, Noah. “Novel Algorithms and Benchmarks for Computational Protein Design.” 2014. Web. 20 Jun 2019.

Vancouver:

Ollikainen N. Novel Algorithms and Benchmarks for Computational Protein Design. [Internet] [Thesis]. University of California – San Francisco; 2014. [cited 2019 Jun 20]. Available from: http://www.escholarship.org/uc/item/21p932jz.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Ollikainen N. Novel Algorithms and Benchmarks for Computational Protein Design. [Thesis]. University of California – San Francisco; 2014. Available from: http://www.escholarship.org/uc/item/21p932jz

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


UCLA

5. Cao, Zheng. Hydrogen Bond Shaping of Membrane Protein Structure.

Degree: Chemistry, 2013, UCLA

 The intricate functions of membrane proteins would not be possible without bends or breaks that are remarkably common in transmembrane helices. The frequent distortions are… (more)

Subjects/Keywords: Chemistry; Deuterium Fractionation Factor; Flexibility; Hydrogen Bond; Membrane Protein; Protein Unfolding; Transmembrane Helix

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APA (6th Edition):

Cao, Z. (2013). Hydrogen Bond Shaping of Membrane Protein Structure. (Thesis). UCLA. Retrieved from http://www.escholarship.org/uc/item/7k03d6pn

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Cao, Zheng. “Hydrogen Bond Shaping of Membrane Protein Structure.” 2013. Thesis, UCLA. Accessed June 20, 2019. http://www.escholarship.org/uc/item/7k03d6pn.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Cao, Zheng. “Hydrogen Bond Shaping of Membrane Protein Structure.” 2013. Web. 20 Jun 2019.

Vancouver:

Cao Z. Hydrogen Bond Shaping of Membrane Protein Structure. [Internet] [Thesis]. UCLA; 2013. [cited 2019 Jun 20]. Available from: http://www.escholarship.org/uc/item/7k03d6pn.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Cao Z. Hydrogen Bond Shaping of Membrane Protein Structure. [Thesis]. UCLA; 2013. Available from: http://www.escholarship.org/uc/item/7k03d6pn

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Kent State University

6. Tripathi, Swarnendu. Conformational Transition Mechanisms of Flexible Proteins.

Degree: PhD, College of Arts and Sciences / Department of Physics, 2010, Kent State University

  Proteins are flexible and dynamic molecules, which serve crucial functions in essentially all biological events in living cells. An important example is allostery, the… (more)

Subjects/Keywords: Biophysics; protein; conformational transitions; flexibility; coarse-grained; folding; calmodulin; ntrc

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APA (6th Edition):

Tripathi, S. (2010). Conformational Transition Mechanisms of Flexible Proteins. (Doctoral Dissertation). Kent State University. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=kent1281491004

Chicago Manual of Style (16th Edition):

Tripathi, Swarnendu. “Conformational Transition Mechanisms of Flexible Proteins.” 2010. Doctoral Dissertation, Kent State University. Accessed June 20, 2019. http://rave.ohiolink.edu/etdc/view?acc_num=kent1281491004.

MLA Handbook (7th Edition):

Tripathi, Swarnendu. “Conformational Transition Mechanisms of Flexible Proteins.” 2010. Web. 20 Jun 2019.

Vancouver:

Tripathi S. Conformational Transition Mechanisms of Flexible Proteins. [Internet] [Doctoral dissertation]. Kent State University; 2010. [cited 2019 Jun 20]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=kent1281491004.

Council of Science Editors:

Tripathi S. Conformational Transition Mechanisms of Flexible Proteins. [Doctoral Dissertation]. Kent State University; 2010. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=kent1281491004


University of Kansas

7. More, Apurva Shirish. ELUCIDATION OF THE IMPACT OF N-GLYCAN STRUCTURE ON PHYSICAL STABILITY AND LOCAL FLEXIBILITY OF WELL-DEFINED IgG1-Fc GLYCOFORMS FROM A PHARMACEUTICAL DEVELOPMENT PERSPECTIVE.

Degree: PhD, Pharmaceutical Chemistry, 2017, University of Kansas

 Therapeutic efficacies of IgG monoclonal antibodies (mAbs) depend on their physicochemical structural integrity, stability, flexibility and biological functionality. IgG-Fc glycosylation at Asn-297 is important for… (more)

Subjects/Keywords: Pharmaceutical sciences; Chemistry; Antibody; Biosimilarity; Flexibility; Glycosylation; Physical Stability; Protein Characterization

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APA (6th Edition):

More, A. S. (2017). ELUCIDATION OF THE IMPACT OF N-GLYCAN STRUCTURE ON PHYSICAL STABILITY AND LOCAL FLEXIBILITY OF WELL-DEFINED IgG1-Fc GLYCOFORMS FROM A PHARMACEUTICAL DEVELOPMENT PERSPECTIVE. (Doctoral Dissertation). University of Kansas. Retrieved from http://hdl.handle.net/1808/25386

Chicago Manual of Style (16th Edition):

More, Apurva Shirish. “ELUCIDATION OF THE IMPACT OF N-GLYCAN STRUCTURE ON PHYSICAL STABILITY AND LOCAL FLEXIBILITY OF WELL-DEFINED IgG1-Fc GLYCOFORMS FROM A PHARMACEUTICAL DEVELOPMENT PERSPECTIVE.” 2017. Doctoral Dissertation, University of Kansas. Accessed June 20, 2019. http://hdl.handle.net/1808/25386.

MLA Handbook (7th Edition):

More, Apurva Shirish. “ELUCIDATION OF THE IMPACT OF N-GLYCAN STRUCTURE ON PHYSICAL STABILITY AND LOCAL FLEXIBILITY OF WELL-DEFINED IgG1-Fc GLYCOFORMS FROM A PHARMACEUTICAL DEVELOPMENT PERSPECTIVE.” 2017. Web. 20 Jun 2019.

Vancouver:

More AS. ELUCIDATION OF THE IMPACT OF N-GLYCAN STRUCTURE ON PHYSICAL STABILITY AND LOCAL FLEXIBILITY OF WELL-DEFINED IgG1-Fc GLYCOFORMS FROM A PHARMACEUTICAL DEVELOPMENT PERSPECTIVE. [Internet] [Doctoral dissertation]. University of Kansas; 2017. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/1808/25386.

Council of Science Editors:

More AS. ELUCIDATION OF THE IMPACT OF N-GLYCAN STRUCTURE ON PHYSICAL STABILITY AND LOCAL FLEXIBILITY OF WELL-DEFINED IgG1-Fc GLYCOFORMS FROM A PHARMACEUTICAL DEVELOPMENT PERSPECTIVE. [Doctoral Dissertation]. University of Kansas; 2017. Available from: http://hdl.handle.net/1808/25386


Indian Institute of Science

8. Katagi, Gurunath M. Analysis of Molecular Dynamics Trajectories of Proteins Performed using Different Forcefields and Identifiction of Mobile Segments.

Degree: 2013, Indian Institute of Science

 The selection of the forcefield is a crucial issue in any MD related work and there is no clear indication as to which of the… (more)

Subjects/Keywords: Protein Structures; Protein Dynamics; Protein Functions; Proteins - Analysis; Proteins - Molecular Dynamics Simulations; Protein Flexibility; Protein Simulation Trajectories; Forcefields - Protein Analysis; Protein Structure - Computation; Molecular Dynamics Simulations; MD Simulations; Biochemistry

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APA (6th Edition):

Katagi, G. M. (2013). Analysis of Molecular Dynamics Trajectories of Proteins Performed using Different Forcefields and Identifiction of Mobile Segments. (Thesis). Indian Institute of Science. Retrieved from http://etd.iisc.ernet.in/2005/3327 ; http://etd.iisc.ernet.in/abstracts/4191/G25705-Abs.pdf

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Katagi, Gurunath M. “Analysis of Molecular Dynamics Trajectories of Proteins Performed using Different Forcefields and Identifiction of Mobile Segments.” 2013. Thesis, Indian Institute of Science. Accessed June 20, 2019. http://etd.iisc.ernet.in/2005/3327 ; http://etd.iisc.ernet.in/abstracts/4191/G25705-Abs.pdf.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Katagi, Gurunath M. “Analysis of Molecular Dynamics Trajectories of Proteins Performed using Different Forcefields and Identifiction of Mobile Segments.” 2013. Web. 20 Jun 2019.

Vancouver:

Katagi GM. Analysis of Molecular Dynamics Trajectories of Proteins Performed using Different Forcefields and Identifiction of Mobile Segments. [Internet] [Thesis]. Indian Institute of Science; 2013. [cited 2019 Jun 20]. Available from: http://etd.iisc.ernet.in/2005/3327 ; http://etd.iisc.ernet.in/abstracts/4191/G25705-Abs.pdf.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Katagi GM. Analysis of Molecular Dynamics Trajectories of Proteins Performed using Different Forcefields and Identifiction of Mobile Segments. [Thesis]. Indian Institute of Science; 2013. Available from: http://etd.iisc.ernet.in/2005/3327 ; http://etd.iisc.ernet.in/abstracts/4191/G25705-Abs.pdf

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of California – San Francisco

9. Mandell, Daniel Jonathan. Backbone Flexibility in Computational Protein Design.

Degree: Biological and Medical Informatics, 2010, University of California – San Francisco

 Over the past two decades the field of computational protein design has produced striking successes, both by improving our understanding of the fundamental principles governing… (more)

Subjects/Keywords: Biophysics, General; Biology, Bioinformatics; backbone flexibility; biosensors; hydrogen bonding; loop modeling; protein design; sequence libraries

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APA (6th Edition):

Mandell, D. J. (2010). Backbone Flexibility in Computational Protein Design. (Thesis). University of California – San Francisco. Retrieved from http://www.escholarship.org/uc/item/89b8n09b

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Mandell, Daniel Jonathan. “Backbone Flexibility in Computational Protein Design.” 2010. Thesis, University of California – San Francisco. Accessed June 20, 2019. http://www.escholarship.org/uc/item/89b8n09b.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Mandell, Daniel Jonathan. “Backbone Flexibility in Computational Protein Design.” 2010. Web. 20 Jun 2019.

Vancouver:

Mandell DJ. Backbone Flexibility in Computational Protein Design. [Internet] [Thesis]. University of California – San Francisco; 2010. [cited 2019 Jun 20]. Available from: http://www.escholarship.org/uc/item/89b8n09b.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Mandell DJ. Backbone Flexibility in Computational Protein Design. [Thesis]. University of California – San Francisco; 2010. Available from: http://www.escholarship.org/uc/item/89b8n09b

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

10. Ceres, Nicoletta. Coarse-grain modeling of proteins : mechanics, dynamics and function : Modèles gros-grain des protéines : mécanique, dynamique et fonction.

Degree: Docteur es, Aspects moléculaires et cellulaires de la biologie, 2012, Université Claude Bernard – Lyon I

Les protéines sont des molécules flexibles, qui accomplissent une variété de tâches cellulaires à travers des mouvements mécaniques et des changements conformationnels encodés dans leur… (more)

Subjects/Keywords: Gros-grains; Mécanique des protéines; Flexibilité; Adaptation thermique; Dépliement des protéines; Coarse-grain; Protein mechanics; Flexibility; Thermal adaptation; Protein unfolding; 572.6

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APA (6th Edition):

Ceres, N. (2012). Coarse-grain modeling of proteins : mechanics, dynamics and function : Modèles gros-grain des protéines : mécanique, dynamique et fonction. (Doctoral Dissertation). Université Claude Bernard – Lyon I. Retrieved from http://www.theses.fr/2012LYO10030

Chicago Manual of Style (16th Edition):

Ceres, Nicoletta. “Coarse-grain modeling of proteins : mechanics, dynamics and function : Modèles gros-grain des protéines : mécanique, dynamique et fonction.” 2012. Doctoral Dissertation, Université Claude Bernard – Lyon I. Accessed June 20, 2019. http://www.theses.fr/2012LYO10030.

MLA Handbook (7th Edition):

Ceres, Nicoletta. “Coarse-grain modeling of proteins : mechanics, dynamics and function : Modèles gros-grain des protéines : mécanique, dynamique et fonction.” 2012. Web. 20 Jun 2019.

Vancouver:

Ceres N. Coarse-grain modeling of proteins : mechanics, dynamics and function : Modèles gros-grain des protéines : mécanique, dynamique et fonction. [Internet] [Doctoral dissertation]. Université Claude Bernard – Lyon I; 2012. [cited 2019 Jun 20]. Available from: http://www.theses.fr/2012LYO10030.

Council of Science Editors:

Ceres N. Coarse-grain modeling of proteins : mechanics, dynamics and function : Modèles gros-grain des protéines : mécanique, dynamique et fonction. [Doctoral Dissertation]. Université Claude Bernard – Lyon I; 2012. Available from: http://www.theses.fr/2012LYO10030


Florida International University

11. Regmi, Chola K. Structural Flexibility and Oxygen Diffusion Pathways in Monomeric Fluorescent Proteins.

Degree: PhD, Physics, 2014, Florida International University

  Fluorescent proteins are valuable tools as biochemical markers for studying cellular processes. Red fluorescent proteins (RFPs) are highly desirable for in vivo applications because… (more)

Subjects/Keywords: Fluorescent Protein; Chromophore; mCherry; Oxygen diffusion; Protein barrel; Structural flexibility; Photostability; Free energy; Molecular dynamics; Biological and Chemical Physics

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APA (6th Edition):

Regmi, C. K. (2014). Structural Flexibility and Oxygen Diffusion Pathways in Monomeric Fluorescent Proteins. (Doctoral Dissertation). Florida International University. Retrieved from http://digitalcommons.fiu.edu/etd/1122 ; 10.25148/etd.FI14040821 ; FI14040821

Chicago Manual of Style (16th Edition):

Regmi, Chola K. “Structural Flexibility and Oxygen Diffusion Pathways in Monomeric Fluorescent Proteins.” 2014. Doctoral Dissertation, Florida International University. Accessed June 20, 2019. http://digitalcommons.fiu.edu/etd/1122 ; 10.25148/etd.FI14040821 ; FI14040821.

MLA Handbook (7th Edition):

Regmi, Chola K. “Structural Flexibility and Oxygen Diffusion Pathways in Monomeric Fluorescent Proteins.” 2014. Web. 20 Jun 2019.

Vancouver:

Regmi CK. Structural Flexibility and Oxygen Diffusion Pathways in Monomeric Fluorescent Proteins. [Internet] [Doctoral dissertation]. Florida International University; 2014. [cited 2019 Jun 20]. Available from: http://digitalcommons.fiu.edu/etd/1122 ; 10.25148/etd.FI14040821 ; FI14040821.

Council of Science Editors:

Regmi CK. Structural Flexibility and Oxygen Diffusion Pathways in Monomeric Fluorescent Proteins. [Doctoral Dissertation]. Florida International University; 2014. Available from: http://digitalcommons.fiu.edu/etd/1122 ; 10.25148/etd.FI14040821 ; FI14040821


Arizona State University

12. Spiriti, Justin Matthew. Applications of Adaptive Umbrella Sampling in Biomolecular Simulation.

Degree: PhD, Chemistry, 2011, Arizona State University

 Conformational changes in biomolecules often take place on longer timescales than are easily accessible with unbiased molecular dynamics simulations, necessitating the use of enhanced sampling… (more)

Subjects/Keywords: Biophysics; Biochemistry; Physical Chemistry; adaptive umbrella sampling; cis peptide bond; Cy3-DNA interaction; DNA flexibility; molecular dynamics simulation; protein glycosylation

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APA (6th Edition):

Spiriti, J. M. (2011). Applications of Adaptive Umbrella Sampling in Biomolecular Simulation. (Doctoral Dissertation). Arizona State University. Retrieved from http://repository.asu.edu/items/9414

Chicago Manual of Style (16th Edition):

Spiriti, Justin Matthew. “Applications of Adaptive Umbrella Sampling in Biomolecular Simulation.” 2011. Doctoral Dissertation, Arizona State University. Accessed June 20, 2019. http://repository.asu.edu/items/9414.

MLA Handbook (7th Edition):

Spiriti, Justin Matthew. “Applications of Adaptive Umbrella Sampling in Biomolecular Simulation.” 2011. Web. 20 Jun 2019.

Vancouver:

Spiriti JM. Applications of Adaptive Umbrella Sampling in Biomolecular Simulation. [Internet] [Doctoral dissertation]. Arizona State University; 2011. [cited 2019 Jun 20]. Available from: http://repository.asu.edu/items/9414.

Council of Science Editors:

Spiriti JM. Applications of Adaptive Umbrella Sampling in Biomolecular Simulation. [Doctoral Dissertation]. Arizona State University; 2011. Available from: http://repository.asu.edu/items/9414


University of Oxford

13. Munz, Marton. Computational studies of protein dynamics and dynamic similarity.

Degree: PhD, 2012, University of Oxford

 At the time of writing this thesis, the complete genomes of more than 180 organisms have been sequenced and more than 80000 biological macromolecular structures… (more)

Subjects/Keywords: 572.636; Bioinformatics (biochemistry); Computational biochemistry; Bioinformatics (life sciences); protein dynamics; PDZ domains; flexibility; molecular dynamics simulations

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APA (6th Edition):

Munz, M. (2012). Computational studies of protein dynamics and dynamic similarity. (Doctoral Dissertation). University of Oxford. Retrieved from http://ora.ox.ac.uk/objects/uuid:2fb76765-3e43-409b-aad3-b5202f4668b3 ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.600735

Chicago Manual of Style (16th Edition):

Munz, Marton. “Computational studies of protein dynamics and dynamic similarity.” 2012. Doctoral Dissertation, University of Oxford. Accessed June 20, 2019. http://ora.ox.ac.uk/objects/uuid:2fb76765-3e43-409b-aad3-b5202f4668b3 ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.600735.

MLA Handbook (7th Edition):

Munz, Marton. “Computational studies of protein dynamics and dynamic similarity.” 2012. Web. 20 Jun 2019.

Vancouver:

Munz M. Computational studies of protein dynamics and dynamic similarity. [Internet] [Doctoral dissertation]. University of Oxford; 2012. [cited 2019 Jun 20]. Available from: http://ora.ox.ac.uk/objects/uuid:2fb76765-3e43-409b-aad3-b5202f4668b3 ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.600735.

Council of Science Editors:

Munz M. Computational studies of protein dynamics and dynamic similarity. [Doctoral Dissertation]. University of Oxford; 2012. Available from: http://ora.ox.ac.uk/objects/uuid:2fb76765-3e43-409b-aad3-b5202f4668b3 ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.600735


Wayne State University

14. Ross, Kyla Nicole. Hiv Integrase Mechanisms Of Resistance To Raltegravir, Elvitegravir, And Dolutegravir.

Degree: MS, Biochemistry and Molecular Biology, 2015, Wayne State University

  ABSTRACT HIV INTEGRASE MECHANISMS OF RESISTANCE TO RALTEGRAVIR, ELVITEGRAVIR, AND DOLUTEGRAVIR by KYLA ROSS December 2015 Advisor: Dr. Ladislau Kovari Major: Biochemistry and Molecular… (more)

Subjects/Keywords: HIV-1; HIV-1 Integrase Resistance Mutations; Integrase Resistance; Integrase Strand Transfer Inhibitors; Protein Flexibility; Biochemistry; Bioinformatics; Virology

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APA (6th Edition):

Ross, K. N. (2015). Hiv Integrase Mechanisms Of Resistance To Raltegravir, Elvitegravir, And Dolutegravir. (Masters Thesis). Wayne State University. Retrieved from https://digitalcommons.wayne.edu/oa_theses/458

Chicago Manual of Style (16th Edition):

Ross, Kyla Nicole. “Hiv Integrase Mechanisms Of Resistance To Raltegravir, Elvitegravir, And Dolutegravir.” 2015. Masters Thesis, Wayne State University. Accessed June 20, 2019. https://digitalcommons.wayne.edu/oa_theses/458.

MLA Handbook (7th Edition):

Ross, Kyla Nicole. “Hiv Integrase Mechanisms Of Resistance To Raltegravir, Elvitegravir, And Dolutegravir.” 2015. Web. 20 Jun 2019.

Vancouver:

Ross KN. Hiv Integrase Mechanisms Of Resistance To Raltegravir, Elvitegravir, And Dolutegravir. [Internet] [Masters thesis]. Wayne State University; 2015. [cited 2019 Jun 20]. Available from: https://digitalcommons.wayne.edu/oa_theses/458.

Council of Science Editors:

Ross KN. Hiv Integrase Mechanisms Of Resistance To Raltegravir, Elvitegravir, And Dolutegravir. [Masters Thesis]. Wayne State University; 2015. Available from: https://digitalcommons.wayne.edu/oa_theses/458


University of South Florida

15. Santiago, Daniel Navarrete. Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides.

Degree: 2012, University of South Florida

 The scope of this work focuses on computationally modeling compounds with protein structures. While the impetus of drug discovery is the innovation of new therapeutic… (more)

Subjects/Keywords: Low-mode; Normal Mode Analysis; Peptide Docking; Protein Flexibility; Virtual Target Screening; Chemistry; Other Chemistry; Pharmacology

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Santiago, D. N. (2012). Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides. (Thesis). University of South Florida. Retrieved from https://scholarcommons.usf.edu/etd/4398

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Santiago, Daniel Navarrete. “Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides.” 2012. Thesis, University of South Florida. Accessed June 20, 2019. https://scholarcommons.usf.edu/etd/4398.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Santiago, Daniel Navarrete. “Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides.” 2012. Web. 20 Jun 2019.

Vancouver:

Santiago DN. Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides. [Internet] [Thesis]. University of South Florida; 2012. [cited 2019 Jun 20]. Available from: https://scholarcommons.usf.edu/etd/4398.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Santiago DN. Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides. [Thesis]. University of South Florida; 2012. Available from: https://scholarcommons.usf.edu/etd/4398

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

16. Jagodzinski, Filip. Towards Large-Scale Validation of Protein Flexibility Using Rigidity Analysis.

Degree: PhD, Computer Science, 2012, U of Massachusetts : PhD

  Proteins are dynamic molecules involved in virtually every chemical process in our bodies. Understanding how they flex and bend provides fundamental insights to their… (more)

Subjects/Keywords: flexibility; protein; rigidity analysis; validation; Computer Sciences

…ABSTRACT TOWARDS LARGE-SCALE VALIDATION OF PROTEIN FLEXIBILITY USING RIGIDITY ANALYSIS… …make progress towards large-scale validation of protein flexibility using rigidity analysis… …2.2.3 2.2.4 2.3 Rigidity Based Protein Flexibility… …24 Rigidity Based Protein Flexibility: Related Work… …flexibility using rigidity analysis. We develop new tools for curating protein structure data, we… 

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APA (6th Edition):

Jagodzinski, F. (2012). Towards Large-Scale Validation of Protein Flexibility Using Rigidity Analysis. (Doctoral Dissertation). U of Massachusetts : PhD. Retrieved from https://scholarworks.umass.edu/open_access_dissertations/646

Chicago Manual of Style (16th Edition):

Jagodzinski, Filip. “Towards Large-Scale Validation of Protein Flexibility Using Rigidity Analysis.” 2012. Doctoral Dissertation, U of Massachusetts : PhD. Accessed June 20, 2019. https://scholarworks.umass.edu/open_access_dissertations/646.

MLA Handbook (7th Edition):

Jagodzinski, Filip. “Towards Large-Scale Validation of Protein Flexibility Using Rigidity Analysis.” 2012. Web. 20 Jun 2019.

Vancouver:

Jagodzinski F. Towards Large-Scale Validation of Protein Flexibility Using Rigidity Analysis. [Internet] [Doctoral dissertation]. U of Massachusetts : PhD; 2012. [cited 2019 Jun 20]. Available from: https://scholarworks.umass.edu/open_access_dissertations/646.

Council of Science Editors:

Jagodzinski F. Towards Large-Scale Validation of Protein Flexibility Using Rigidity Analysis. [Doctoral Dissertation]. U of Massachusetts : PhD; 2012. Available from: https://scholarworks.umass.edu/open_access_dissertations/646

17. Alves, Ariane Ferreira Nunes. Um método computacional para estimar afinidades entre proteínas flexíveis e pequenos ligantes.

Degree: Mestrado, Bioquímica, 2013, University of São Paulo

Métodos computacionais são usados para gerar estruturas de complexo proteína-ligante e estimar suas afinidades. Esse trabalho investigou como as diferentes representações da flexibilidade proteica afetam… (more)

Subjects/Keywords: Afinidade ligante-proteína; Ancoragem molecular; Conformational flexibility; Docking; Energia de interação linear (LIE); Flexibilidade conformacional; Ligand-protein affinity; Linear interaction energy (LIE); Lisozima T4; Protein; Proteínas; T4 lysozyme

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APA (6th Edition):

Alves, A. F. N. (2013). Um método computacional para estimar afinidades entre proteínas flexíveis e pequenos ligantes. (Masters Thesis). University of São Paulo. Retrieved from http://www.teses.usp.br/teses/disponiveis/46/46131/tde-08052013-144801/ ;

Chicago Manual of Style (16th Edition):

Alves, Ariane Ferreira Nunes. “Um método computacional para estimar afinidades entre proteínas flexíveis e pequenos ligantes.” 2013. Masters Thesis, University of São Paulo. Accessed June 20, 2019. http://www.teses.usp.br/teses/disponiveis/46/46131/tde-08052013-144801/ ;.

MLA Handbook (7th Edition):

Alves, Ariane Ferreira Nunes. “Um método computacional para estimar afinidades entre proteínas flexíveis e pequenos ligantes.” 2013. Web. 20 Jun 2019.

Vancouver:

Alves AFN. Um método computacional para estimar afinidades entre proteínas flexíveis e pequenos ligantes. [Internet] [Masters thesis]. University of São Paulo; 2013. [cited 2019 Jun 20]. Available from: http://www.teses.usp.br/teses/disponiveis/46/46131/tde-08052013-144801/ ;.

Council of Science Editors:

Alves AFN. Um método computacional para estimar afinidades entre proteínas flexíveis e pequenos ligantes. [Masters Thesis]. University of São Paulo; 2013. Available from: http://www.teses.usp.br/teses/disponiveis/46/46131/tde-08052013-144801/ ;

18. Lorenzi, Magali. Etude des transitions structurales dans les protéines flexibles par marquage de spin suivi par spectroscopie de Résonance Paramagnétique Electronique (RPE) : The denial of justice under its economical aspect in the international arbitration law. The negative effect of the principle of "compétence-compétence".

Degree: Docteur es, Sciences Chimiques, 2011, Aix-Marseille 1

L’étude des transitions structurales dans les protéines est d’un intérêt crucial car ces transformations sont impliquées dans de nombreux processus biologiques essentiels. De tels phénomènes… (more)

Subjects/Keywords: Transitions structurales; Flexibilité des protéines; Spectroscopie RPE; Interactions protéine-protéine; Radicaux nitroxydes; Sondes paramagnétiques; Structural transitions; Proteins flexibility; EPR spectroscopy; Protein-protein interactions; Nitroxide reagents; Paramagnetic probes

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APA (6th Edition):

Lorenzi, M. (2011). Etude des transitions structurales dans les protéines flexibles par marquage de spin suivi par spectroscopie de Résonance Paramagnétique Electronique (RPE) : The denial of justice under its economical aspect in the international arbitration law. The negative effect of the principle of "compétence-compétence". (Doctoral Dissertation). Aix-Marseille 1. Retrieved from http://www.theses.fr/2011AIX10139

Chicago Manual of Style (16th Edition):

Lorenzi, Magali. “Etude des transitions structurales dans les protéines flexibles par marquage de spin suivi par spectroscopie de Résonance Paramagnétique Electronique (RPE) : The denial of justice under its economical aspect in the international arbitration law. The negative effect of the principle of "compétence-compétence".” 2011. Doctoral Dissertation, Aix-Marseille 1. Accessed June 20, 2019. http://www.theses.fr/2011AIX10139.

MLA Handbook (7th Edition):

Lorenzi, Magali. “Etude des transitions structurales dans les protéines flexibles par marquage de spin suivi par spectroscopie de Résonance Paramagnétique Electronique (RPE) : The denial of justice under its economical aspect in the international arbitration law. The negative effect of the principle of "compétence-compétence".” 2011. Web. 20 Jun 2019.

Vancouver:

Lorenzi M. Etude des transitions structurales dans les protéines flexibles par marquage de spin suivi par spectroscopie de Résonance Paramagnétique Electronique (RPE) : The denial of justice under its economical aspect in the international arbitration law. The negative effect of the principle of "compétence-compétence". [Internet] [Doctoral dissertation]. Aix-Marseille 1; 2011. [cited 2019 Jun 20]. Available from: http://www.theses.fr/2011AIX10139.

Council of Science Editors:

Lorenzi M. Etude des transitions structurales dans les protéines flexibles par marquage de spin suivi par spectroscopie de Résonance Paramagnétique Electronique (RPE) : The denial of justice under its economical aspect in the international arbitration law. The negative effect of the principle of "compétence-compétence". [Doctoral Dissertation]. Aix-Marseille 1; 2011. Available from: http://www.theses.fr/2011AIX10139


Humboldt University of Berlin

19. Sydow, Dominique. Dynophores: Novel Dynamic Pharmacophores.

Degree: 2015, Humboldt University of Berlin

In der medizinischen Chemie und Wirkstoffforschung haben sich Pharmakophormodelle als wichtige Methode für molekulares Design etabliert. Ein 3D Pharmakophormodell repräsentiert ein Ensemble von universellen sterischen… (more)

Subjects/Keywords: Biowissenschaften, Biologie; Computer-gestütztes Wirkstoffdesign; Dynophor; dynamischer Pharmakophor; Pharmakophor-Modellierung; Molecular Dynamics Simulation; Protein-Liganden-Wechselwirkung; Protein-Liganden-Flexibilität; Virtuelles Screening; computer-aided drug design; dynophore; dynamic pharmacophore; pharmacophore modelling; molecular dynamics simulation; protein-ligand-interaction; protein-ligand-flexibility; virtual screening; ddc:570

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APA (6th Edition):

Sydow, D. (2015). Dynophores: Novel Dynamic Pharmacophores. (Masters Thesis). Humboldt University of Berlin. Retrieved from http://edoc.hu-berlin.de/docviews/abstract.php?id=42507 ; http://edoc.hu-berlin.de/master/sydow-dominique-2015-11-30/PDF/sydow.pdf ; http://www.nbn-resolving.de/urn:nbn:de:kobv:11-100236903

Chicago Manual of Style (16th Edition):

Sydow, Dominique. “Dynophores: Novel Dynamic Pharmacophores.” 2015. Masters Thesis, Humboldt University of Berlin. Accessed June 20, 2019. http://edoc.hu-berlin.de/docviews/abstract.php?id=42507 ; http://edoc.hu-berlin.de/master/sydow-dominique-2015-11-30/PDF/sydow.pdf ; http://www.nbn-resolving.de/urn:nbn:de:kobv:11-100236903.

MLA Handbook (7th Edition):

Sydow, Dominique. “Dynophores: Novel Dynamic Pharmacophores.” 2015. Web. 20 Jun 2019.

Vancouver:

Sydow D. Dynophores: Novel Dynamic Pharmacophores. [Internet] [Masters thesis]. Humboldt University of Berlin; 2015. [cited 2019 Jun 20]. Available from: http://edoc.hu-berlin.de/docviews/abstract.php?id=42507 ; http://edoc.hu-berlin.de/master/sydow-dominique-2015-11-30/PDF/sydow.pdf ; http://www.nbn-resolving.de/urn:nbn:de:kobv:11-100236903.

Council of Science Editors:

Sydow D. Dynophores: Novel Dynamic Pharmacophores. [Masters Thesis]. Humboldt University of Berlin; 2015. Available from: http://edoc.hu-berlin.de/docviews/abstract.php?id=42507 ; http://edoc.hu-berlin.de/master/sydow-dominique-2015-11-30/PDF/sydow.pdf ; http://www.nbn-resolving.de/urn:nbn:de:kobv:11-100236903


Duke University

20. Georgiev, Ivelin Stefanov. Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design .

Degree: 2009, Duke University

  Computational protein design aims at identifying protein mutations and conformations with desired target properties (such as increased protein stability, switch of substrate specificity, or… (more)

Subjects/Keywords: Computer Science; Dead; End Elimination; protein flexibility; protein; ligand binding; provably; accurate algorithms; small; molecule inhibitors; structure; based protein design

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APA (6th Edition):

Georgiev, I. S. (2009). Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design . (Thesis). Duke University. Retrieved from http://hdl.handle.net/10161/1113

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Georgiev, Ivelin Stefanov. “Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design .” 2009. Thesis, Duke University. Accessed June 20, 2019. http://hdl.handle.net/10161/1113.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Georgiev, Ivelin Stefanov. “Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design .” 2009. Web. 20 Jun 2019.

Vancouver:

Georgiev IS. Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design . [Internet] [Thesis]. Duke University; 2009. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/10161/1113.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Georgiev IS. Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design . [Thesis]. Duke University; 2009. Available from: http://hdl.handle.net/10161/1113

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Louisiana State University

21. Ghosh, Sharmistha. DNA binding properties of histone-like protein HU from Deinoccus radiodurans suggest involvement in DNA recombination.

Degree: PhD, 2004, Louisiana State University

 The Histone-like protein HU is ubiquitous in eubacteria. Usually with a length of ~90 amino acids, they are predominantly homodimeric, with sequence and structural homology.… (more)

Subjects/Keywords: bacterial chromatin; dna bending; type ii dna binding protein; holliday junction; dna flexibility

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APA (6th Edition):

Ghosh, S. (2004). DNA binding properties of histone-like protein HU from Deinoccus radiodurans suggest involvement in DNA recombination. (Doctoral Dissertation). Louisiana State University. Retrieved from etd-11082004-113624 ; https://digitalcommons.lsu.edu/gradschool_dissertations/3888

Chicago Manual of Style (16th Edition):

Ghosh, Sharmistha. “DNA binding properties of histone-like protein HU from Deinoccus radiodurans suggest involvement in DNA recombination.” 2004. Doctoral Dissertation, Louisiana State University. Accessed June 20, 2019. etd-11082004-113624 ; https://digitalcommons.lsu.edu/gradschool_dissertations/3888.

MLA Handbook (7th Edition):

Ghosh, Sharmistha. “DNA binding properties of histone-like protein HU from Deinoccus radiodurans suggest involvement in DNA recombination.” 2004. Web. 20 Jun 2019.

Vancouver:

Ghosh S. DNA binding properties of histone-like protein HU from Deinoccus radiodurans suggest involvement in DNA recombination. [Internet] [Doctoral dissertation]. Louisiana State University; 2004. [cited 2019 Jun 20]. Available from: etd-11082004-113624 ; https://digitalcommons.lsu.edu/gradschool_dissertations/3888.

Council of Science Editors:

Ghosh S. DNA binding properties of histone-like protein HU from Deinoccus radiodurans suggest involvement in DNA recombination. [Doctoral Dissertation]. Louisiana State University; 2004. Available from: etd-11082004-113624 ; https://digitalcommons.lsu.edu/gradschool_dissertations/3888


University of California – San Francisco

22. Humphris, Elisabeth Lyn. Computational Protein Design with Multiple Structural and Functional Constraints.

Degree: Biophysics, 2009, University of California – San Francisco

 In this work, a series of computational tools to predict protein sequences compatible with a given three-dimensional protein structure and a set of structural or… (more)

Subjects/Keywords: Biophysics, General; backbone flexibility; computational biology; protein design; sequence plasticity

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APA (6th Edition):

Humphris, E. L. (2009). Computational Protein Design with Multiple Structural and Functional Constraints. (Thesis). University of California – San Francisco. Retrieved from http://www.escholarship.org/uc/item/5b85p7mm

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Humphris, Elisabeth Lyn. “Computational Protein Design with Multiple Structural and Functional Constraints.” 2009. Thesis, University of California – San Francisco. Accessed June 20, 2019. http://www.escholarship.org/uc/item/5b85p7mm.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Humphris, Elisabeth Lyn. “Computational Protein Design with Multiple Structural and Functional Constraints.” 2009. Web. 20 Jun 2019.

Vancouver:

Humphris EL. Computational Protein Design with Multiple Structural and Functional Constraints. [Internet] [Thesis]. University of California – San Francisco; 2009. [cited 2019 Jun 20]. Available from: http://www.escholarship.org/uc/item/5b85p7mm.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Humphris EL. Computational Protein Design with Multiple Structural and Functional Constraints. [Thesis]. University of California – San Francisco; 2009. Available from: http://www.escholarship.org/uc/item/5b85p7mm

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Australian National University

23. Alonso, Hernan. Computer Modelling and Simulations of Enzymes and their Mechanisms .

Degree: 2006, Australian National University

 Although the tremendous catalytic power of enzymes is widely recognized, their exact mechanisms of action are still a source of debate. In order to elucidate… (more)

Subjects/Keywords: computational biology • molecular dynamics • docking • free energy • protonation • drug resistance • protein flexibility • ligand binding • dihydrofolate reductase • methyl transferase

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APA (6th Edition):

Alonso, H. (2006). Computer Modelling and Simulations of Enzymes and their Mechanisms . (Thesis). Australian National University. Retrieved from http://hdl.handle.net/1885/49280

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Alonso, Hernan. “Computer Modelling and Simulations of Enzymes and their Mechanisms .” 2006. Thesis, Australian National University. Accessed June 20, 2019. http://hdl.handle.net/1885/49280.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Alonso, Hernan. “Computer Modelling and Simulations of Enzymes and their Mechanisms .” 2006. Web. 20 Jun 2019.

Vancouver:

Alonso H. Computer Modelling and Simulations of Enzymes and their Mechanisms . [Internet] [Thesis]. Australian National University; 2006. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/1885/49280.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Alonso H. Computer Modelling and Simulations of Enzymes and their Mechanisms . [Thesis]. Australian National University; 2006. Available from: http://hdl.handle.net/1885/49280

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

24. Lexa, Katrina Walden. Protein Flexibility in Structure-Based Drug Design.

Degree: PhD, Medicinal Chemistry, 2011, University of Michigan

 Structure-based drug design (SBDD) is defined as the use of three-dimensional structural data to advance lead development and optimization studies. Many SBDD projects have used… (more)

Subjects/Keywords: Protein Flexibility; Molecular Dynamics; Computational Chemistry; Mixed Solvent; HIV-1 Protease; Probe Mapping; Chemistry; Science

…have illustrated the significant influence protein flexibility exerts upon binding… …predictions. Inclusion of protein flexibility has become essential due to the need for ligands with… …decreasing approval of clinical candidates. Additionally, accurate modeling of protein flexibility… …development, we have specifically targeted protein flexibility in another canonical protein system… …protein flexibility and new surfacemapping methods, an improvement would be seen in terms of… 

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APA (6th Edition):

Lexa, K. W. (2011). Protein Flexibility in Structure-Based Drug Design. (Doctoral Dissertation). University of Michigan. Retrieved from http://hdl.handle.net/2027.42/89799

Chicago Manual of Style (16th Edition):

Lexa, Katrina Walden. “Protein Flexibility in Structure-Based Drug Design.” 2011. Doctoral Dissertation, University of Michigan. Accessed June 20, 2019. http://hdl.handle.net/2027.42/89799.

MLA Handbook (7th Edition):

Lexa, Katrina Walden. “Protein Flexibility in Structure-Based Drug Design.” 2011. Web. 20 Jun 2019.

Vancouver:

Lexa KW. Protein Flexibility in Structure-Based Drug Design. [Internet] [Doctoral dissertation]. University of Michigan; 2011. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/2027.42/89799.

Council of Science Editors:

Lexa KW. Protein Flexibility in Structure-Based Drug Design. [Doctoral Dissertation]. University of Michigan; 2011. Available from: http://hdl.handle.net/2027.42/89799


ETH Zürich

25. Owczarz, Marta Monika. Intermolecular interactions underlying the mechanisms and kinetics of protein aggregation.

Degree: 2015, ETH Zürich

Subjects/Keywords: PROTEIN AGGREGATION (PROTEINMISSFALTUNG); INTERMOLEKULARE WECHSELWIRKUNGEN (CHEMISCHE BINDUNG); PROTEIN-PROTEIN-WECHSELWIRKUNGEN; SELBSTORGANISATION (BIOLOGIE); STRUKTURELLE STABILITÄT UND FLEXIBILITÄT (PROTEINE, PEPTIDE); PROTEIN AGGREGATION (PROTEIN MISFOLDING); INTERMOLECULAR INTERACTIONS (CHEMICAL BONDS); PROTEIN-PROTEIN INTERACTIONS; SELF-ORGANIZATION (BIOLOGY); STRUCTURAL STABILITY AND FLEXIBILITY (PROTEINS, PEPTIDES); info:eu-repo/classification/ddc/570; Life sciences

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Owczarz, M. M. (2015). Intermolecular interactions underlying the mechanisms and kinetics of protein aggregation. (Doctoral Dissertation). ETH Zürich. Retrieved from http://hdl.handle.net/20.500.11850/155326

Chicago Manual of Style (16th Edition):

Owczarz, Marta Monika. “Intermolecular interactions underlying the mechanisms and kinetics of protein aggregation.” 2015. Doctoral Dissertation, ETH Zürich. Accessed June 20, 2019. http://hdl.handle.net/20.500.11850/155326.

MLA Handbook (7th Edition):

Owczarz, Marta Monika. “Intermolecular interactions underlying the mechanisms and kinetics of protein aggregation.” 2015. Web. 20 Jun 2019.

Vancouver:

Owczarz MM. Intermolecular interactions underlying the mechanisms and kinetics of protein aggregation. [Internet] [Doctoral dissertation]. ETH Zürich; 2015. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/20.500.11850/155326.

Council of Science Editors:

Owczarz MM. Intermolecular interactions underlying the mechanisms and kinetics of protein aggregation. [Doctoral Dissertation]. ETH Zürich; 2015. Available from: http://hdl.handle.net/20.500.11850/155326


University of Queensland

26. Bajaj, Megha. Development of novel anti-infective drugs targeting microbial proteins.

Degree: Institute for Molecular Bioscience, 2015, University of Queensland

Subjects/Keywords: Virulence factor; Substrate-binding protein; PsaA; Conformational flexibility; Fragment based drug discovery; Purine metabolic pathway; IMPDH; 0304 Medicinal and Biomolecular Chemistry; 0307 Theoretical and Computational Chemistry

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APA (6th Edition):

Bajaj, M. (2015). Development of novel anti-infective drugs targeting microbial proteins. (Thesis). University of Queensland. Retrieved from http://espace.library.uq.edu.au/view/UQ:375524

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Bajaj, Megha. “Development of novel anti-infective drugs targeting microbial proteins.” 2015. Thesis, University of Queensland. Accessed June 20, 2019. http://espace.library.uq.edu.au/view/UQ:375524.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Bajaj, Megha. “Development of novel anti-infective drugs targeting microbial proteins.” 2015. Web. 20 Jun 2019.

Vancouver:

Bajaj M. Development of novel anti-infective drugs targeting microbial proteins. [Internet] [Thesis]. University of Queensland; 2015. [cited 2019 Jun 20]. Available from: http://espace.library.uq.edu.au/view/UQ:375524.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Bajaj M. Development of novel anti-infective drugs targeting microbial proteins. [Thesis]. University of Queensland; 2015. Available from: http://espace.library.uq.edu.au/view/UQ:375524

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

27. Bettadapura Raghu, Prasad Radhakrishna. Flexible fitting in 3D EM.

Degree: Mechanical Engineering, 2012, University of Texas – Austin

 In flexible fitting, the high-resolution crystal structure of a molecule is deformed to optimize its position with respect to a low-resolution density map. Solving the… (more)

Subjects/Keywords: Rigid-body search; Motion groups; Fourier-based correlations; Spherical Fourier transform; SO(3) Fourier Transform; Rigid-body Fitting; Flexible fitting; Protein flexibility; Harmonic analysis; Domain decomposition

…structures: alpha helices, beta sheets, and skeletons . . . . 2.4 Protein flexibility models… …Domain-based protein flexibility framework . . . . . . . . . . . 69 3.8.2 Algorithm for… …and 4 are combined with a hierarchical protein flexibility model to develop a new flexible… …solventinduced flexibility of a protein is thus as much a geometric problem as it is a dynamical one… …basic to protein flexibility models; readers already familiar with these concepts should skip… 

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Bettadapura Raghu, P. R. (2012). Flexible fitting in 3D EM. (Thesis). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/19478

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Bettadapura Raghu, Prasad Radhakrishna. “Flexible fitting in 3D EM.” 2012. Thesis, University of Texas – Austin. Accessed June 20, 2019. http://hdl.handle.net/2152/19478.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Bettadapura Raghu, Prasad Radhakrishna. “Flexible fitting in 3D EM.” 2012. Web. 20 Jun 2019.

Vancouver:

Bettadapura Raghu PR. Flexible fitting in 3D EM. [Internet] [Thesis]. University of Texas – Austin; 2012. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/2152/19478.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Bettadapura Raghu PR. Flexible fitting in 3D EM. [Thesis]. University of Texas – Austin; 2012. Available from: http://hdl.handle.net/2152/19478

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Michigan

28. Damm, Kelly Lynn. Protein Flexibility in Structure-Based Drug Design: Method Development and Novel Mechanisms for Inhibiting HIV-1 Protease.

Degree: PhD, Medicinal Chemistry, 2007, University of Michigan

 Structure-based drug design (SBDD) has emerged as an important tool in drug discovery research. Traditionally, SBDD is based on a static crystal structure of the… (more)

Subjects/Keywords: Structure-based Drug Design; Protein Flexibility; Human Immunodeficiency Virus Type 1 Protease; Novel Inhibition Mechanism of HIV-1 Protease; Flap-recognition Pocket; Chemistry; Science (General); Health Sciences; Science

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Damm, K. L. (2007). Protein Flexibility in Structure-Based Drug Design: Method Development and Novel Mechanisms for Inhibiting HIV-1 Protease. (Doctoral Dissertation). University of Michigan. Retrieved from http://hdl.handle.net/2027.42/57666

Chicago Manual of Style (16th Edition):

Damm, Kelly Lynn. “Protein Flexibility in Structure-Based Drug Design: Method Development and Novel Mechanisms for Inhibiting HIV-1 Protease.” 2007. Doctoral Dissertation, University of Michigan. Accessed June 20, 2019. http://hdl.handle.net/2027.42/57666.

MLA Handbook (7th Edition):

Damm, Kelly Lynn. “Protein Flexibility in Structure-Based Drug Design: Method Development and Novel Mechanisms for Inhibiting HIV-1 Protease.” 2007. Web. 20 Jun 2019.

Vancouver:

Damm KL. Protein Flexibility in Structure-Based Drug Design: Method Development and Novel Mechanisms for Inhibiting HIV-1 Protease. [Internet] [Doctoral dissertation]. University of Michigan; 2007. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/2027.42/57666.

Council of Science Editors:

Damm KL. Protein Flexibility in Structure-Based Drug Design: Method Development and Novel Mechanisms for Inhibiting HIV-1 Protease. [Doctoral Dissertation]. University of Michigan; 2007. Available from: http://hdl.handle.net/2027.42/57666


ETH Zürich

29. Nicoud, Lucrèce. Aggregation of therapeutic proteins from dilute towards concentrated conditions.

Degree: 2016, ETH Zürich

Subjects/Keywords: KONZENTRATION UND AKTIVITÄT (CHEMIE); STRUCTURAL STABILITY AND FLEXIBILITY (PROTEINS, PEPTIDES); STRUKTURELLE STABILITÄT UND FLEXIBILITÄT (PROTEINE, PEPTIDE); SOLUTION ACTIVITY AND CONCENTRATION (CHEMISTRY); PROTEIN AGGREGATION (PROTEINMISSFALTUNG); MONOCLONAL ANTIBODIES (IMMUNOLOGICAL TECHNIQUES); COLLOID CHEMISTRY; KOLLOIDCHEMIE; DRUG DEVELOPMENT + DRUG DESIGN + DRUG DISCOVERY (PHARMACY); MONOKLONALE ANTIKÖRPER (IMMUNOLOGISCHE TECHNIKEN); PROTEIN AGGREGATION (PROTEIN MISFOLDING); ARZNEIMITTELENTWICKLUNG + ARZNEIMITTELDESIGN + ARZNEIMITTELENTDECKUNG; info:eu-repo/classification/ddc/540; info:eu-repo/classification/ddc/610; Chemistry; Medical sciences, medicine

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Nicoud, L. (2016). Aggregation of therapeutic proteins from dilute towards concentrated conditions. (Doctoral Dissertation). ETH Zürich. Retrieved from http://hdl.handle.net/20.500.11850/115977

Chicago Manual of Style (16th Edition):

Nicoud, Lucrèce. “Aggregation of therapeutic proteins from dilute towards concentrated conditions.” 2016. Doctoral Dissertation, ETH Zürich. Accessed June 20, 2019. http://hdl.handle.net/20.500.11850/115977.

MLA Handbook (7th Edition):

Nicoud, Lucrèce. “Aggregation of therapeutic proteins from dilute towards concentrated conditions.” 2016. Web. 20 Jun 2019.

Vancouver:

Nicoud L. Aggregation of therapeutic proteins from dilute towards concentrated conditions. [Internet] [Doctoral dissertation]. ETH Zürich; 2016. [cited 2019 Jun 20]. Available from: http://hdl.handle.net/20.500.11850/115977.

Council of Science Editors:

Nicoud L. Aggregation of therapeutic proteins from dilute towards concentrated conditions. [Doctoral Dissertation]. ETH Zürich; 2016. Available from: http://hdl.handle.net/20.500.11850/115977

.