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You searched for subject:(Normal Mode Analysis). Showing records 1 – 23 of 23 total matches.

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University of Waterloo

1. Borowski, Krzysztof. Conformational Ensemble Generation via Constraint-based Rigid-body Dynamics Guided by the Elastic Network Model.

Degree: 2011, University of Waterloo

 Conformational selection is the idea that proteins traverse positions on the conformational space represented by their potential energy landscape, and in particular positions considered as… (more)

Subjects/Keywords: protein structure; normal mode analysis; rigidity; rigid-body dynamics; ligand binding

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APA (6th Edition):

Borowski, K. (2011). Conformational Ensemble Generation via Constraint-based Rigid-body Dynamics Guided by the Elastic Network Model. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/6162

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Borowski, Krzysztof. “Conformational Ensemble Generation via Constraint-based Rigid-body Dynamics Guided by the Elastic Network Model.” 2011. Thesis, University of Waterloo. Accessed August 09, 2020. http://hdl.handle.net/10012/6162.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Borowski, Krzysztof. “Conformational Ensemble Generation via Constraint-based Rigid-body Dynamics Guided by the Elastic Network Model.” 2011. Web. 09 Aug 2020.

Vancouver:

Borowski K. Conformational Ensemble Generation via Constraint-based Rigid-body Dynamics Guided by the Elastic Network Model. [Internet] [Thesis]. University of Waterloo; 2011. [cited 2020 Aug 09]. Available from: http://hdl.handle.net/10012/6162.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Borowski K. Conformational Ensemble Generation via Constraint-based Rigid-body Dynamics Guided by the Elastic Network Model. [Thesis]. University of Waterloo; 2011. Available from: http://hdl.handle.net/10012/6162

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Iowa State University

2. Song, Jaekyun. Investigating the effects of different force fields on spring-based normal mode analysis.

Degree: 2016, Iowa State University

 Classical normal mode analysis (CNMA) has been widely acknowledged as one of the most useful simulation tools for studying protein dynamics. CNMA uses a fine-grained… (more)

Subjects/Keywords: AMBER; ENM; NMA; Normal mode analysis; sbNMA; Vibrational spectrum; Bioinformatics; Biophysics; Computer Sciences

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APA (6th Edition):

Song, J. (2016). Investigating the effects of different force fields on spring-based normal mode analysis. (Thesis). Iowa State University. Retrieved from https://lib.dr.iastate.edu/etd/15812

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Song, Jaekyun. “Investigating the effects of different force fields on spring-based normal mode analysis.” 2016. Thesis, Iowa State University. Accessed August 09, 2020. https://lib.dr.iastate.edu/etd/15812.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Song, Jaekyun. “Investigating the effects of different force fields on spring-based normal mode analysis.” 2016. Web. 09 Aug 2020.

Vancouver:

Song J. Investigating the effects of different force fields on spring-based normal mode analysis. [Internet] [Thesis]. Iowa State University; 2016. [cited 2020 Aug 09]. Available from: https://lib.dr.iastate.edu/etd/15812.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Song J. Investigating the effects of different force fields on spring-based normal mode analysis. [Thesis]. Iowa State University; 2016. Available from: https://lib.dr.iastate.edu/etd/15812

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Iowa State University

3. Park, Jun-Koo. On coarse-grained Normal Mode Analysis and refined Gaussian Network Model for protein structure fluctuations.

Degree: 2012, Iowa State University

 The functions of biological structures are related to the dynamics of the structures, especially various kinds of large-amplitude molecular motions. With some assumptions, those motions… (more)

Subjects/Keywords: Gaussian Network Model; mean squared fluctuation; Normal Mode Analysis; protein structure; Bioinformatics; Mathematics

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APA (6th Edition):

Park, J. (2012). On coarse-grained Normal Mode Analysis and refined Gaussian Network Model for protein structure fluctuations. (Thesis). Iowa State University. Retrieved from https://lib.dr.iastate.edu/etd/12668

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Park, Jun-Koo. “On coarse-grained Normal Mode Analysis and refined Gaussian Network Model for protein structure fluctuations.” 2012. Thesis, Iowa State University. Accessed August 09, 2020. https://lib.dr.iastate.edu/etd/12668.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Park, Jun-Koo. “On coarse-grained Normal Mode Analysis and refined Gaussian Network Model for protein structure fluctuations.” 2012. Web. 09 Aug 2020.

Vancouver:

Park J. On coarse-grained Normal Mode Analysis and refined Gaussian Network Model for protein structure fluctuations. [Internet] [Thesis]. Iowa State University; 2012. [cited 2020 Aug 09]. Available from: https://lib.dr.iastate.edu/etd/12668.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Park J. On coarse-grained Normal Mode Analysis and refined Gaussian Network Model for protein structure fluctuations. [Thesis]. Iowa State University; 2012. Available from: https://lib.dr.iastate.edu/etd/12668

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


New Jersey Institute of Technology

4. Wu, Tao. A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent.

Degree: PhD, Computer Science, 2011, New Jersey Institute of Technology

  This dissertation presents a new computational framework for calculating the normal modes and interactions of proteins, macromolecular assemblies and surrounding solvents. The framework employs… (more)

Subjects/Keywords: Molecular dynamics; Normal mode analysis; Principal component; Parallel computing; Protein; Computer Sciences

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APA (6th Edition):

Wu, T. (2011). A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent. (Doctoral Dissertation). New Jersey Institute of Technology. Retrieved from https://digitalcommons.njit.edu/dissertations/247

Chicago Manual of Style (16th Edition):

Wu, Tao. “A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent.” 2011. Doctoral Dissertation, New Jersey Institute of Technology. Accessed August 09, 2020. https://digitalcommons.njit.edu/dissertations/247.

MLA Handbook (7th Edition):

Wu, Tao. “A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent.” 2011. Web. 09 Aug 2020.

Vancouver:

Wu T. A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent. [Internet] [Doctoral dissertation]. New Jersey Institute of Technology; 2011. [cited 2020 Aug 09]. Available from: https://digitalcommons.njit.edu/dissertations/247.

Council of Science Editors:

Wu T. A molecular dynamics simulation based principal component analysis framework for computation of multi-scale modeling of protein and its interaction with solvent. [Doctoral Dissertation]. New Jersey Institute of Technology; 2011. Available from: https://digitalcommons.njit.edu/dissertations/247


University of South Florida

5. Santiago, Daniel Navarrete. Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides.

Degree: 2012, University of South Florida

 The scope of this work focuses on computationally modeling compounds with protein structures. While the impetus of drug discovery is the innovation of new therapeutic… (more)

Subjects/Keywords: Low-mode; Normal Mode Analysis; Peptide Docking; Protein Flexibility; Virtual Target Screening; Chemistry; Other Chemistry; Pharmacology

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APA (6th Edition):

Santiago, D. N. (2012). Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides. (Thesis). University of South Florida. Retrieved from https://scholarcommons.usf.edu/etd/4398

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Santiago, Daniel Navarrete. “Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides.” 2012. Thesis, University of South Florida. Accessed August 09, 2020. https://scholarcommons.usf.edu/etd/4398.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Santiago, Daniel Navarrete. “Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides.” 2012. Web. 09 Aug 2020.

Vancouver:

Santiago DN. Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides. [Internet] [Thesis]. University of South Florida; 2012. [cited 2020 Aug 09]. Available from: https://scholarcommons.usf.edu/etd/4398.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Santiago DN. Use and Development of Computational Tools in Drug Discovery: From Small Molecules to Cyclic Peptides. [Thesis]. University of South Florida; 2012. Available from: https://scholarcommons.usf.edu/etd/4398

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

6. Hsu, Chiung-fang. Application of Finite Element Method in Protein Normal Mode Analysis.

Degree: MS, Mechanical Engineering, 2013, University of Massachusetts

  This study proposed a finite element procedure for protein normal mode analysis (NMA). The finite element model adopted the protein solvent-excluded surface to generate… (more)

Subjects/Keywords: protein normal mode analysis; finite element analysis; protein elastic network model; Applied Mechanics; Biomechanical Engineering; Computer-Aided Engineering and Design

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APA (6th Edition):

Hsu, C. (2013). Application of Finite Element Method in Protein Normal Mode Analysis. (Masters Thesis). University of Massachusetts. Retrieved from https://scholarworks.umass.edu/theses/1014

Chicago Manual of Style (16th Edition):

Hsu, Chiung-fang. “Application of Finite Element Method in Protein Normal Mode Analysis.” 2013. Masters Thesis, University of Massachusetts. Accessed August 09, 2020. https://scholarworks.umass.edu/theses/1014.

MLA Handbook (7th Edition):

Hsu, Chiung-fang. “Application of Finite Element Method in Protein Normal Mode Analysis.” 2013. Web. 09 Aug 2020.

Vancouver:

Hsu C. Application of Finite Element Method in Protein Normal Mode Analysis. [Internet] [Masters thesis]. University of Massachusetts; 2013. [cited 2020 Aug 09]. Available from: https://scholarworks.umass.edu/theses/1014.

Council of Science Editors:

Hsu C. Application of Finite Element Method in Protein Normal Mode Analysis. [Masters Thesis]. University of Massachusetts; 2013. Available from: https://scholarworks.umass.edu/theses/1014

7. Mendonça, Matheus Rodrigues de. Análise de modos normais em proteínas.

Degree: Mestrado, Física Aplicada à Medicina e Biologia, 2010, University of São Paulo

A abordagem de modos normais de baixa frequência na descrição das flutuações conformacionais dos estados nativos das proteínas globulares tem ajudado na caracterização das suas… (more)

Subjects/Keywords: Análise de modos normais; B-factor; fator de temperatura; gaussian elastic network model; modelo de rede gaussiana; Normal mode analysis

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APA (6th Edition):

Mendonça, M. R. d. (2010). Análise de modos normais em proteínas. (Masters Thesis). University of São Paulo. Retrieved from http://www.teses.usp.br/teses/disponiveis/59/59135/tde-18032011-170446/ ;

Chicago Manual of Style (16th Edition):

Mendonça, Matheus Rodrigues de. “Análise de modos normais em proteínas.” 2010. Masters Thesis, University of São Paulo. Accessed August 09, 2020. http://www.teses.usp.br/teses/disponiveis/59/59135/tde-18032011-170446/ ;.

MLA Handbook (7th Edition):

Mendonça, Matheus Rodrigues de. “Análise de modos normais em proteínas.” 2010. Web. 09 Aug 2020.

Vancouver:

Mendonça MRd. Análise de modos normais em proteínas. [Internet] [Masters thesis]. University of São Paulo; 2010. [cited 2020 Aug 09]. Available from: http://www.teses.usp.br/teses/disponiveis/59/59135/tde-18032011-170446/ ;.

Council of Science Editors:

Mendonça MRd. Análise de modos normais em proteínas. [Masters Thesis]. University of São Paulo; 2010. Available from: http://www.teses.usp.br/teses/disponiveis/59/59135/tde-18032011-170446/ ;

8. Câmara, Amanda Souza. Uma transição assimétrica entre estados simétricos: o alosterismo da Glucosamina 6-fosfato Desaminase.

Degree: Mestrado, Física Aplicada, 2013, University of São Paulo

Sistemas alostéricos são característicos de proteínas com um ou mais estados de equilíbrio. Nesse sentido, uma enzima passa por modificações de sua atividade quando um… (more)

Subjects/Keywords: Allostery; Alosterismo; Análise de modos normais; Dinâmica molecular; Inertia tensor; Molecular dynamics; Normal mode analysis; Simetria; Symmetry; Tensor de inércia

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APA (6th Edition):

Câmara, A. S. (2013). Uma transição assimétrica entre estados simétricos: o alosterismo da Glucosamina 6-fosfato Desaminase. (Masters Thesis). University of São Paulo. Retrieved from http://www.teses.usp.br/teses/disponiveis/76/76132/tde-18042013-101101/ ;

Chicago Manual of Style (16th Edition):

Câmara, Amanda Souza. “Uma transição assimétrica entre estados simétricos: o alosterismo da Glucosamina 6-fosfato Desaminase.” 2013. Masters Thesis, University of São Paulo. Accessed August 09, 2020. http://www.teses.usp.br/teses/disponiveis/76/76132/tde-18042013-101101/ ;.

MLA Handbook (7th Edition):

Câmara, Amanda Souza. “Uma transição assimétrica entre estados simétricos: o alosterismo da Glucosamina 6-fosfato Desaminase.” 2013. Web. 09 Aug 2020.

Vancouver:

Câmara AS. Uma transição assimétrica entre estados simétricos: o alosterismo da Glucosamina 6-fosfato Desaminase. [Internet] [Masters thesis]. University of São Paulo; 2013. [cited 2020 Aug 09]. Available from: http://www.teses.usp.br/teses/disponiveis/76/76132/tde-18042013-101101/ ;.

Council of Science Editors:

Câmara AS. Uma transição assimétrica entre estados simétricos: o alosterismo da Glucosamina 6-fosfato Desaminase. [Masters Thesis]. University of São Paulo; 2013. Available from: http://www.teses.usp.br/teses/disponiveis/76/76132/tde-18042013-101101/ ;


University of Cincinnati

9. Posgai, Monica Therese. Energetic and dynamic characterization of the IgA1:FcaRI interaction reveals long-range conformational changes in IgA1 upon receptor binding.

Degree: PhD, Medicine: Molecular Genetics, Biochemistry, and Microbiology, 2012, University of Cincinnati

 The interaction between immunoglobulin A (IgA) and the IgA-specific receptor, FcaRI, initiates a pro-inflammatory immune response in the presence of a multivalent antigen, and has… (more)

Subjects/Keywords: Biology; Biophysics; Immunology; Molecular Biology; Molecules; Fca; RI, Immunoglobulin A, surface plasmon resonance, energetics, dynamic, normal mode analysis

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APA (6th Edition):

Posgai, M. T. (2012). Energetic and dynamic characterization of the IgA1:FcaRI interaction reveals long-range conformational changes in IgA1 upon receptor binding. (Doctoral Dissertation). University of Cincinnati. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=ucin1354043317

Chicago Manual of Style (16th Edition):

Posgai, Monica Therese. “Energetic and dynamic characterization of the IgA1:FcaRI interaction reveals long-range conformational changes in IgA1 upon receptor binding.” 2012. Doctoral Dissertation, University of Cincinnati. Accessed August 09, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1354043317.

MLA Handbook (7th Edition):

Posgai, Monica Therese. “Energetic and dynamic characterization of the IgA1:FcaRI interaction reveals long-range conformational changes in IgA1 upon receptor binding.” 2012. Web. 09 Aug 2020.

Vancouver:

Posgai MT. Energetic and dynamic characterization of the IgA1:FcaRI interaction reveals long-range conformational changes in IgA1 upon receptor binding. [Internet] [Doctoral dissertation]. University of Cincinnati; 2012. [cited 2020 Aug 09]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1354043317.

Council of Science Editors:

Posgai MT. Energetic and dynamic characterization of the IgA1:FcaRI interaction reveals long-range conformational changes in IgA1 upon receptor binding. [Doctoral Dissertation]. University of Cincinnati; 2012. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1354043317


Mississippi State University

10. Rehman, Habib. Insights on protein structure and dynamics from temperature-dependent molecular dynamics and normal mode analysis.

Degree: PhD, Chemistry, 2014, Mississippi State University

  In this thesis we have employed two computational approaches, temperature-dependent molecular dynamics (MD) and normal mode analysis (NMA), to gain insights into the structure-function… (more)

Subjects/Keywords: alpha/beta-fold; Serine hydrolases; pnbCE; Cutinase; TTHA1554; Stability; Flexibility; Dynamics; Temperature-dependent MD; Normal Mode Analysis; Docking

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APA (6th Edition):

Rehman, H. (2014). Insights on protein structure and dynamics from temperature-dependent molecular dynamics and normal mode analysis. (Doctoral Dissertation). Mississippi State University. Retrieved from http://sun.library.msstate.edu/ETD-db/theses/available/etd-11252013-173830/ ;

Chicago Manual of Style (16th Edition):

Rehman, Habib. “Insights on protein structure and dynamics from temperature-dependent molecular dynamics and normal mode analysis.” 2014. Doctoral Dissertation, Mississippi State University. Accessed August 09, 2020. http://sun.library.msstate.edu/ETD-db/theses/available/etd-11252013-173830/ ;.

MLA Handbook (7th Edition):

Rehman, Habib. “Insights on protein structure and dynamics from temperature-dependent molecular dynamics and normal mode analysis.” 2014. Web. 09 Aug 2020.

Vancouver:

Rehman H. Insights on protein structure and dynamics from temperature-dependent molecular dynamics and normal mode analysis. [Internet] [Doctoral dissertation]. Mississippi State University; 2014. [cited 2020 Aug 09]. Available from: http://sun.library.msstate.edu/ETD-db/theses/available/etd-11252013-173830/ ;.

Council of Science Editors:

Rehman H. Insights on protein structure and dynamics from temperature-dependent molecular dynamics and normal mode analysis. [Doctoral Dissertation]. Mississippi State University; 2014. Available from: http://sun.library.msstate.edu/ETD-db/theses/available/etd-11252013-173830/ ;


University of Michigan

11. Datta, Nabanita. Hydroelastic Response of Marine Structures to Impact-induced Vibrations. Hydroelastic Reponse of Marine Structures to Impact-induced Vibrations.

Degree: PhD, Naval Architecture & Marine Engineering, 2010, University of Michigan

 This research deals with the numerical analysis of the hydroelastic behavior of marine vessels under hydrodynamic impact loads, which causes potentially detrimental local flexural vibrations… (more)

Subjects/Keywords: Vibrations; Hydroelasticity; Marine Structures; Moving Loads; Hydrodynamic Impact; Normal Mode Analysis; Naval Architecture and Marine Engineering; Engineering

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APA (6th Edition):

Datta, N. (2010). Hydroelastic Response of Marine Structures to Impact-induced Vibrations. Hydroelastic Reponse of Marine Structures to Impact-induced Vibrations. (Doctoral Dissertation). University of Michigan. Retrieved from http://hdl.handle.net/2027.42/78773

Chicago Manual of Style (16th Edition):

Datta, Nabanita. “Hydroelastic Response of Marine Structures to Impact-induced Vibrations. Hydroelastic Reponse of Marine Structures to Impact-induced Vibrations.” 2010. Doctoral Dissertation, University of Michigan. Accessed August 09, 2020. http://hdl.handle.net/2027.42/78773.

MLA Handbook (7th Edition):

Datta, Nabanita. “Hydroelastic Response of Marine Structures to Impact-induced Vibrations. Hydroelastic Reponse of Marine Structures to Impact-induced Vibrations.” 2010. Web. 09 Aug 2020.

Vancouver:

Datta N. Hydroelastic Response of Marine Structures to Impact-induced Vibrations. Hydroelastic Reponse of Marine Structures to Impact-induced Vibrations. [Internet] [Doctoral dissertation]. University of Michigan; 2010. [cited 2020 Aug 09]. Available from: http://hdl.handle.net/2027.42/78773.

Council of Science Editors:

Datta N. Hydroelastic Response of Marine Structures to Impact-induced Vibrations. Hydroelastic Reponse of Marine Structures to Impact-induced Vibrations. [Doctoral Dissertation]. University of Michigan; 2010. Available from: http://hdl.handle.net/2027.42/78773


University of Texas – Austin

12. Soheilifard, Reza. Mechanical models of proteins.

Degree: PhD, Engineering Mechanics, 2011, University of Texas – Austin

 In general, this dissertation is concerned with modeling of mechanical behavior of protein molecules. In particular, we focus on coarse-grained models, which bridge the gap… (more)

Subjects/Keywords: B-factors; Polymer mediated interaction; Coarse-graining; Relaxation dynamics; Proteins; Normal mode analysis; Elastic network models; Translation libration screw model

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APA (6th Edition):

Soheilifard, R. (2011). Mechanical models of proteins. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/26940

Chicago Manual of Style (16th Edition):

Soheilifard, Reza. “Mechanical models of proteins.” 2011. Doctoral Dissertation, University of Texas – Austin. Accessed August 09, 2020. http://hdl.handle.net/2152/26940.

MLA Handbook (7th Edition):

Soheilifard, Reza. “Mechanical models of proteins.” 2011. Web. 09 Aug 2020.

Vancouver:

Soheilifard R. Mechanical models of proteins. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2011. [cited 2020 Aug 09]. Available from: http://hdl.handle.net/2152/26940.

Council of Science Editors:

Soheilifard R. Mechanical models of proteins. [Doctoral Dissertation]. University of Texas – Austin; 2011. Available from: http://hdl.handle.net/2152/26940


George Mason University

13. Morris, David. Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules .

Degree: George Mason University

 Nearly all cellular processes involve proteins structurally rearranging to accommodate molecular partners. The energy landscape underscores the inherent nature of proteins as dynamic molecules interconverting… (more)

Subjects/Keywords: protein dynamics; energy landscape; sampling; normal mode analysis

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APA (6th Edition):

Morris, D. (n.d.). Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules . (Thesis). George Mason University. Retrieved from http://hdl.handle.net/1920/10917

Note: this citation may be lacking information needed for this citation format:
No year of publication.
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Morris, David. “Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules .” Thesis, George Mason University. Accessed August 09, 2020. http://hdl.handle.net/1920/10917.

Note: this citation may be lacking information needed for this citation format:
No year of publication.
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Morris, David. “Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules .” Web. 09 Aug 2020.

Note: this citation may be lacking information needed for this citation format:
No year of publication.

Vancouver:

Morris D. Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules . [Internet] [Thesis]. George Mason University; [cited 2020 Aug 09]. Available from: http://hdl.handle.net/1920/10917.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
No year of publication.

Council of Science Editors:

Morris D. Snapshots and Springs: Analyzing and Reproducing the Motions of Molecules . [Thesis]. George Mason University; Available from: http://hdl.handle.net/1920/10917

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
No year of publication.

14. Esmenjaud, Jean-Baptiste. Dynamique structurale et allostérie des récepteurs NMDA : Structural dynamics and allostery of NMDA receptors.

Degree: Docteur es, Neurosciences, 2018, Paris Sciences et Lettres

Les récepteurs ionotropiques du glutamate sont responsables de la vaste majorité de la neurotransmission excitatrice rapide dans le système nerveux central. Parmi eux, les récepteurs… (more)

Subjects/Keywords: NMDA; Glutamate; Récepteur membranaire; Canal ionique; Allostérie; Synapse; Électrophysiologie; Modélisation; Analyse en modes normaux; Roulis; NMDA; Glutamate; Membrane receptor; Ion channel; Allostery; Synapse; Electrophysiology; Modeling; Normal mode analysis; Rolling; 616.8

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APA (6th Edition):

Esmenjaud, J. (2018). Dynamique structurale et allostérie des récepteurs NMDA : Structural dynamics and allostery of NMDA receptors. (Doctoral Dissertation). Paris Sciences et Lettres. Retrieved from http://www.theses.fr/2018PSLEE016

Chicago Manual of Style (16th Edition):

Esmenjaud, Jean-Baptiste. “Dynamique structurale et allostérie des récepteurs NMDA : Structural dynamics and allostery of NMDA receptors.” 2018. Doctoral Dissertation, Paris Sciences et Lettres. Accessed August 09, 2020. http://www.theses.fr/2018PSLEE016.

MLA Handbook (7th Edition):

Esmenjaud, Jean-Baptiste. “Dynamique structurale et allostérie des récepteurs NMDA : Structural dynamics and allostery of NMDA receptors.” 2018. Web. 09 Aug 2020.

Vancouver:

Esmenjaud J. Dynamique structurale et allostérie des récepteurs NMDA : Structural dynamics and allostery of NMDA receptors. [Internet] [Doctoral dissertation]. Paris Sciences et Lettres; 2018. [cited 2020 Aug 09]. Available from: http://www.theses.fr/2018PSLEE016.

Council of Science Editors:

Esmenjaud J. Dynamique structurale et allostérie des récepteurs NMDA : Structural dynamics and allostery of NMDA receptors. [Doctoral Dissertation]. Paris Sciences et Lettres; 2018. Available from: http://www.theses.fr/2018PSLEE016

15. Raj, Sharad K. Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins.

Degree: MS, Mechanical Engineering, 2009, University of Massachusetts

 A novel method of analysis of macromolecules has been worked upon through this research. In an effort to understand the dynamics of macromolecules and to… (more)

Subjects/Keywords: Elastic Network Model; Normal Mode Analysis; Spectroscopy; Molecular Biology; Structural Biology

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Raj, S. K. (2009). Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins. (Masters Thesis). University of Massachusetts. Retrieved from https://scholarworks.umass.edu/theses/261

Chicago Manual of Style (16th Edition):

Raj, Sharad K. “Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins.” 2009. Masters Thesis, University of Massachusetts. Accessed August 09, 2020. https://scholarworks.umass.edu/theses/261.

MLA Handbook (7th Edition):

Raj, Sharad K. “Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins.” 2009. Web. 09 Aug 2020.

Vancouver:

Raj SK. Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins. [Internet] [Masters thesis]. University of Massachusetts; 2009. [cited 2020 Aug 09]. Available from: https://scholarworks.umass.edu/theses/261.

Council of Science Editors:

Raj SK. Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins. [Masters Thesis]. University of Massachusetts; 2009. Available from: https://scholarworks.umass.edu/theses/261

16. Schulz, William John, Jr. Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis.

Degree: PhD, Ocean/Earth/Atmos Sciences, 1999, Old Dominion University

  Rapid environmental assessment is conducted using disparate data sources in the northwestern Gulf of Mexico. An overview of significant physical features in the Gulf… (more)

Subjects/Keywords: Gulf of Mexico; Normal mode analysis; Ocean surface; Surface maps; Oceanography; Remote Sensing

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Schulz, William John, J. (1999). Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis. (Doctoral Dissertation). Old Dominion University. Retrieved from 9780599652750 ; https://digitalcommons.odu.edu/oeas_etds/80

Chicago Manual of Style (16th Edition):

Schulz, William John, Jr. “Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis.” 1999. Doctoral Dissertation, Old Dominion University. Accessed August 09, 2020. 9780599652750 ; https://digitalcommons.odu.edu/oeas_etds/80.

MLA Handbook (7th Edition):

Schulz, William John, Jr. “Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis.” 1999. Web. 09 Aug 2020.

Vancouver:

Schulz, William John J. Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis. [Internet] [Doctoral dissertation]. Old Dominion University; 1999. [cited 2020 Aug 09]. Available from: 9780599652750 ; https://digitalcommons.odu.edu/oeas_etds/80.

Council of Science Editors:

Schulz, William John J. Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis. [Doctoral Dissertation]. Old Dominion University; 1999. Available from: 9780599652750 ; https://digitalcommons.odu.edu/oeas_etds/80


Iowa State University

17. Na, Hyuntae. Normal mode computations and applications.

Degree: 2016, Iowa State University

 Proteins are fundamental functional units in cells. Proteins form stable and yet somewhat flexible 3D structures and often function by interacting with other molecules. Their… (more)

Subjects/Keywords: Computer Science; Computational Molecular Biology; Coarse-Graining; Elastic Network Model; Ligand Migration Channel; Normal Mode Analysis; Spring-based NMA; Vibrational Spectrum; Bioinformatics; Biophysics; Computer Sciences

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APA (6th Edition):

Na, H. (2016). Normal mode computations and applications. (Thesis). Iowa State University. Retrieved from https://lib.dr.iastate.edu/etd/15071

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Na, Hyuntae. “Normal mode computations and applications.” 2016. Thesis, Iowa State University. Accessed August 09, 2020. https://lib.dr.iastate.edu/etd/15071.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Na, Hyuntae. “Normal mode computations and applications.” 2016. Web. 09 Aug 2020.

Vancouver:

Na H. Normal mode computations and applications. [Internet] [Thesis]. Iowa State University; 2016. [cited 2020 Aug 09]. Available from: https://lib.dr.iastate.edu/etd/15071.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Na H. Normal mode computations and applications. [Thesis]. Iowa State University; 2016. Available from: https://lib.dr.iastate.edu/etd/15071

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brno University of Technology

18. Talanda, Tomáš. Aeroelastická analýza konstrukce letounu VUT 081 Kondor: VUT 081 Kondor aircraft aeroelastic analysis.

Degree: 2018, Brno University of Technology

 This master thesis deals with VUT~081~Kondor aircraft flutter analysis. This aircraft is being designed at the Institute of Aerospace Engineering, Faculty of Mechanical Engineering, Brno… (more)

Subjects/Keywords: VUT~081~Kondor; aeroelasticita; třepetání; vlastní frekvence; vlastní tvary; modální analýza; VUT~081~Kondor; aeroelasticity; flutter; natural frequency; normal mode; modal analysis

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Talanda, T. (2018). Aeroelastická analýza konstrukce letounu VUT 081 Kondor: VUT 081 Kondor aircraft aeroelastic analysis. (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/34061

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Talanda, Tomáš. “Aeroelastická analýza konstrukce letounu VUT 081 Kondor: VUT 081 Kondor aircraft aeroelastic analysis.” 2018. Thesis, Brno University of Technology. Accessed August 09, 2020. http://hdl.handle.net/11012/34061.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Talanda, Tomáš. “Aeroelastická analýza konstrukce letounu VUT 081 Kondor: VUT 081 Kondor aircraft aeroelastic analysis.” 2018. Web. 09 Aug 2020.

Vancouver:

Talanda T. Aeroelastická analýza konstrukce letounu VUT 081 Kondor: VUT 081 Kondor aircraft aeroelastic analysis. [Internet] [Thesis]. Brno University of Technology; 2018. [cited 2020 Aug 09]. Available from: http://hdl.handle.net/11012/34061.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Talanda T. Aeroelastická analýza konstrukce letounu VUT 081 Kondor: VUT 081 Kondor aircraft aeroelastic analysis. [Thesis]. Brno University of Technology; 2018. Available from: http://hdl.handle.net/11012/34061

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

19. Louet, Maxime. Étude à l'échelle moléculaire des protéines-G couplées à leurs récepteurs. : Molecular scale study of G-proteins coupled to the their receptors.

Degree: Docteur es, Ingéniérie Moléculaire, 2012, Université Montpellier I

Les protéines-G hétérotrimériques, constituées des sous-unités α, β et γ, sont les premières actrices de la transduction du signal en interagissant directement avec les Récepteurs… (more)

Subjects/Keywords: Protéines-G hétérotrimériques; Récepteurs couplés aux protéines-G; Mécanique Moléculaire; Dynamique Moléculaire; Analyse de Mode Normaux; Analyse Quasi-harmonique; Heterotrimeric G-protein; G-protein coupled receptor; Molecular Mechanics; Molecular Dynamics; Normal Mode Analysis; Quasi-harmonic Analysis; Molecular Dynamics

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Louet, M. (2012). Étude à l'échelle moléculaire des protéines-G couplées à leurs récepteurs. : Molecular scale study of G-proteins coupled to the their receptors. (Doctoral Dissertation). Université Montpellier I. Retrieved from http://www.theses.fr/2012MON1T014

Chicago Manual of Style (16th Edition):

Louet, Maxime. “Étude à l'échelle moléculaire des protéines-G couplées à leurs récepteurs. : Molecular scale study of G-proteins coupled to the their receptors.” 2012. Doctoral Dissertation, Université Montpellier I. Accessed August 09, 2020. http://www.theses.fr/2012MON1T014.

MLA Handbook (7th Edition):

Louet, Maxime. “Étude à l'échelle moléculaire des protéines-G couplées à leurs récepteurs. : Molecular scale study of G-proteins coupled to the their receptors.” 2012. Web. 09 Aug 2020.

Vancouver:

Louet M. Étude à l'échelle moléculaire des protéines-G couplées à leurs récepteurs. : Molecular scale study of G-proteins coupled to the their receptors. [Internet] [Doctoral dissertation]. Université Montpellier I; 2012. [cited 2020 Aug 09]. Available from: http://www.theses.fr/2012MON1T014.

Council of Science Editors:

Louet M. Étude à l'échelle moléculaire des protéines-G couplées à leurs récepteurs. : Molecular scale study of G-proteins coupled to the their receptors. [Doctoral Dissertation]. Université Montpellier I; 2012. Available from: http://www.theses.fr/2012MON1T014

20. Herrgård, Sanna. Computational Analysis of Protein Function – Lipases and A-Kinase Anchoring Proteins.

Degree: 2001, Helsinki University of Technology

In this thesis, normal mode analysis, electrostatic calculations, and sequence-based bioinformatics methods were applied to investigate protein sequence-structure-function relationship. Two different protein families were studied:… (more)

Subjects/Keywords: A-kinase anchoring protein; domain architecture; domain motion; electrostatics; normal mode analysis; Rhizomucor miehei lipase

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APA (6th Edition):

Herrgård, S. (2001). Computational Analysis of Protein Function – Lipases and A-Kinase Anchoring Proteins. (Thesis). Helsinki University of Technology. Retrieved from http://lib.tkk.fi/Diss/2001/isbn9512253615/

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Herrgård, Sanna. “Computational Analysis of Protein Function – Lipases and A-Kinase Anchoring Proteins.” 2001. Thesis, Helsinki University of Technology. Accessed August 09, 2020. http://lib.tkk.fi/Diss/2001/isbn9512253615/.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Herrgård, Sanna. “Computational Analysis of Protein Function – Lipases and A-Kinase Anchoring Proteins.” 2001. Web. 09 Aug 2020.

Vancouver:

Herrgård S. Computational Analysis of Protein Function – Lipases and A-Kinase Anchoring Proteins. [Internet] [Thesis]. Helsinki University of Technology; 2001. [cited 2020 Aug 09]. Available from: http://lib.tkk.fi/Diss/2001/isbn9512253615/.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Herrgård S. Computational Analysis of Protein Function – Lipases and A-Kinase Anchoring Proteins. [Thesis]. Helsinki University of Technology; 2001. Available from: http://lib.tkk.fi/Diss/2001/isbn9512253615/

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

21. Mott, Adam J. Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes.

Degree: PhD, Physics, 2012, Arizona State University

 The goal of this theoretical study of infrared spectra was to ascertain to what degree molecules may be identified from their IR spectra and which… (more)

Subjects/Keywords: Biophysics; force field; infrared spectroscopy; molecular vibrations; normal mode analysis; proteins; quantum chemistry

…method for predicting molecular vibrations is normal mode analysis. This method considers… …In order to do normal mode analysis, one must have a way to calculate the total potential… …theory of small oscillations and normal mode analysis. In Chapter 3, I will apply normal mode… …as a basis for performing normal mode analysis and calculating IR spectra for a set of… …knowledge of the vibrational motions of the molecules (either from normal mode analysis or… 

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APA (6th Edition):

Mott, A. J. (2012). Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes. (Doctoral Dissertation). Arizona State University. Retrieved from http://repository.asu.edu/items/15193

Chicago Manual of Style (16th Edition):

Mott, Adam J. “Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes.” 2012. Doctoral Dissertation, Arizona State University. Accessed August 09, 2020. http://repository.asu.edu/items/15193.

MLA Handbook (7th Edition):

Mott, Adam J. “Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes.” 2012. Web. 09 Aug 2020.

Vancouver:

Mott AJ. Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes. [Internet] [Doctoral dissertation]. Arizona State University; 2012. [cited 2020 Aug 09]. Available from: http://repository.asu.edu/items/15193.

Council of Science Editors:

Mott AJ. Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes. [Doctoral Dissertation]. Arizona State University; 2012. Available from: http://repository.asu.edu/items/15193

22. Shrestha, Pooja. Mechanism of substrate protein remodeling by molecular chaperones.

Degree: PhD, Arts and Sciences: Physics, 2013, University of Cincinnati

 Protein quality control regulates the natural load of proteins by providing folding assistance or degradation mechanism to prevent misfolding or aggregation. It is maintained by… (more)

Subjects/Keywords: Biophysics; Protein quality control; Normal mode analysis; Multi-domain protein; Effect of confinement; Group II chaperonin; ClpP

…allosteric communications of the archaeal chaperonin thermosome revealed by normal mode analysis 9… …assisted by a sequential allosteric motion (22). We use normal mode analysis of an… …dissociate (38). I use normal mode analysis (23) to understand these allosteric… …allosteric transition of group II transition. I use normal mode analysis to understand how distinct… …in helical protrusion and two helices. In chapter 5, I present the normal mode analysis of… 

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APA (6th Edition):

Shrestha, P. (2013). Mechanism of substrate protein remodeling by molecular chaperones. (Doctoral Dissertation). University of Cincinnati. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=ucin1378113185

Chicago Manual of Style (16th Edition):

Shrestha, Pooja. “Mechanism of substrate protein remodeling by molecular chaperones.” 2013. Doctoral Dissertation, University of Cincinnati. Accessed August 09, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1378113185.

MLA Handbook (7th Edition):

Shrestha, Pooja. “Mechanism of substrate protein remodeling by molecular chaperones.” 2013. Web. 09 Aug 2020.

Vancouver:

Shrestha P. Mechanism of substrate protein remodeling by molecular chaperones. [Internet] [Doctoral dissertation]. University of Cincinnati; 2013. [cited 2020 Aug 09]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1378113185.

Council of Science Editors:

Shrestha P. Mechanism of substrate protein remodeling by molecular chaperones. [Doctoral Dissertation]. University of Cincinnati; 2013. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1378113185


Brno University of Technology

23. Stloukal, Štěpán. Zesílení ŽB sloupu pomocí ocelové bandáže: Reinforcement concrete column strengthening via steel bandage.

Degree: 2019, Brno University of Technology

 The steel bandage is an economical and effective widely used method for strengthening RC columns. Diploma thesis reviews most common design proposals for the types… (more)

Subjects/Keywords: železobetonový sloup; zesílení; ocelová bandáž; úhelník; pásek; způsob porušení; sevřený beton; numerická analýza; ATENA; mezní stav únosnosti; normálová síla; ohybový moment; postup posouzení; interakční diagram; rámová konstrukce; RC column; strengthening; steel bandage; steel angles; steel strips; failure mode; confined concrete; numerical analysis; ATENA; ultimate limit state; normal force; bending moment; design rules; interaction diagram; frame structure

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Stloukal, . (2019). Zesílení ŽB sloupu pomocí ocelové bandáže: Reinforcement concrete column strengthening via steel bandage. (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/64340

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Stloukal, Štěpán. “Zesílení ŽB sloupu pomocí ocelové bandáže: Reinforcement concrete column strengthening via steel bandage.” 2019. Thesis, Brno University of Technology. Accessed August 09, 2020. http://hdl.handle.net/11012/64340.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Stloukal, Štěpán. “Zesílení ŽB sloupu pomocí ocelové bandáže: Reinforcement concrete column strengthening via steel bandage.” 2019. Web. 09 Aug 2020.

Vancouver:

Stloukal . Zesílení ŽB sloupu pomocí ocelové bandáže: Reinforcement concrete column strengthening via steel bandage. [Internet] [Thesis]. Brno University of Technology; 2019. [cited 2020 Aug 09]. Available from: http://hdl.handle.net/11012/64340.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Stloukal . Zesílení ŽB sloupu pomocí ocelové bandáže: Reinforcement concrete column strengthening via steel bandage. [Thesis]. Brno University of Technology; 2019. Available from: http://hdl.handle.net/11012/64340

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

.