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You searched for subject:(Multiple protein structure alignment). Showing records 1 – 30 of 45996 total matches.

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University of Windsor

1. Roy, Kaushik. Multiple Alignment of Structures using Center of Proteins.

Degree: MS, Computer Science, 2014, University of Windsor

  There is a buzz among structural biologists about conducting a major portion of their future work in silico, due to progressively refined computational tools… (more)

Subjects/Keywords: Center star method; Dynamic programming; Multiple protein structure alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Roy, K. (2014). Multiple Alignment of Structures using Center of Proteins. (Masters Thesis). University of Windsor. Retrieved from http://scholar.uwindsor.ca/etd/5175

Chicago Manual of Style (16th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Masters Thesis, University of Windsor. Accessed January 21, 2020. http://scholar.uwindsor.ca/etd/5175.

MLA Handbook (7th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Web. 21 Jan 2020.

Vancouver:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Internet] [Masters thesis]. University of Windsor; 2014. [cited 2020 Jan 21]. Available from: http://scholar.uwindsor.ca/etd/5175.

Council of Science Editors:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Masters Thesis]. University of Windsor; 2014. Available from: http://scholar.uwindsor.ca/etd/5175


University of Western Ontario

2. Dickson, Russell J. Computational Molecular Coevolution.

Degree: 2013, University of Western Ontario

 A major goal in computational biochemistry is to obtain three-dimensional structure information from protein sequence. Coevolution represents a biological mechanism through which structural information can… (more)

Subjects/Keywords: Coevolution; multiple sequence alignment; protein structure prediction; local covariation; protein family curation; Mutual Information; Bioinformatics

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APA (6th Edition):

Dickson, R. J. (2013). Computational Molecular Coevolution. (Thesis). University of Western Ontario. Retrieved from https://ir.lib.uwo.ca/etd/1798

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Dickson, Russell J. “Computational Molecular Coevolution.” 2013. Thesis, University of Western Ontario. Accessed January 21, 2020. https://ir.lib.uwo.ca/etd/1798.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Dickson, Russell J. “Computational Molecular Coevolution.” 2013. Web. 21 Jan 2020.

Vancouver:

Dickson RJ. Computational Molecular Coevolution. [Internet] [Thesis]. University of Western Ontario; 2013. [cited 2020 Jan 21]. Available from: https://ir.lib.uwo.ca/etd/1798.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Dickson RJ. Computational Molecular Coevolution. [Thesis]. University of Western Ontario; 2013. Available from: https://ir.lib.uwo.ca/etd/1798

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Waterloo

3. Cui, Xuefeng. Finding Similar Protein Structures Efficiently and Effectively.

Degree: 2014, University of Waterloo

 To assess the similarities and the differences among protein structures, a variety of structure alignment algorithms and programs have been designed and implemented. We introduce… (more)

Subjects/Keywords: Bioinformatics; Protein Structure Retrieval; Protein Structure Alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Cui, X. (2014). Finding Similar Protein Structures Efficiently and Effectively. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/8349

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Cui, Xuefeng. “Finding Similar Protein Structures Efficiently and Effectively.” 2014. Thesis, University of Waterloo. Accessed January 21, 2020. http://hdl.handle.net/10012/8349.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Cui, Xuefeng. “Finding Similar Protein Structures Efficiently and Effectively.” 2014. Web. 21 Jan 2020.

Vancouver:

Cui X. Finding Similar Protein Structures Efficiently and Effectively. [Internet] [Thesis]. University of Waterloo; 2014. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/10012/8349.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Cui X. Finding Similar Protein Structures Efficiently and Effectively. [Thesis]. University of Waterloo; 2014. Available from: http://hdl.handle.net/10012/8349

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Universitat Pompeu Fabra

4. Kemena, Carsten, 1983-. Improving the accuracy and the efficiency of multiple sequence alignment methods.

Degree: Departament de Ciències Experimentals i de la Salut, 2012, Universitat Pompeu Fabra

 El alineamiento es uno de los métodos básicos en la comparación de secuencias biológicas, y a menudo el primer pasó en análisis posteriores. Por su… (more)

Subjects/Keywords: Bioinformatics; Multiple sequence alignment; Alignment evaluation; Large-scale alignment; Protein structure; RNA structure; Bioinformática; Alineamiento múltiple de secuencias; Evaluación de alineamientos; Alineamientos múltiples de secuencia a gran escala; Estructura de proteínas; Estructura de ARN; 577

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Kemena, Carsten, 1. (2012). Improving the accuracy and the efficiency of multiple sequence alignment methods. (Thesis). Universitat Pompeu Fabra. Retrieved from http://hdl.handle.net/10803/128678

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Kemena, Carsten, 1983-. “Improving the accuracy and the efficiency of multiple sequence alignment methods.” 2012. Thesis, Universitat Pompeu Fabra. Accessed January 21, 2020. http://hdl.handle.net/10803/128678.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Kemena, Carsten, 1983-. “Improving the accuracy and the efficiency of multiple sequence alignment methods.” 2012. Web. 21 Jan 2020.

Vancouver:

Kemena, Carsten 1. Improving the accuracy and the efficiency of multiple sequence alignment methods. [Internet] [Thesis]. Universitat Pompeu Fabra; 2012. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/10803/128678.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Kemena, Carsten 1. Improving the accuracy and the efficiency of multiple sequence alignment methods. [Thesis]. Universitat Pompeu Fabra; 2012. Available from: http://hdl.handle.net/10803/128678

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Houston

5. -7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.

Degree: Biology and Biochemistry, Department of, 2015, University of Houston

 This dissertation consists of a study of the effects of multiple-alignment method on phylogenetic analyses. First, I investigated the effects of multiple-sequence alignment quality on… (more)

Subjects/Keywords: Multiple-sequence alignment; alignment refining; protein sequence evolution; branch-length estimation; phylogenetic trees; mammals

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

-7998-0272. (2015). Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. (Thesis). University of Houston. Retrieved from http://hdl.handle.net/10657/1741

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

-7998-0272. “Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.” 2015. Thesis, University of Houston. Accessed January 21, 2020. http://hdl.handle.net/10657/1741.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

-7998-0272. “Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.” 2015. Web. 21 Jan 2020.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Vancouver:

-7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. [Internet] [Thesis]. University of Houston; 2015. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/10657/1741.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

-7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. [Thesis]. University of Houston; 2015. Available from: http://hdl.handle.net/10657/1741

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

6. Roy, Kaushik. Multiple Alignment of Structures using Center of Proteins.

Degree: MS, Computer Science, 2014, University of Windsor

  There is a buzz among structural biologists about conducting a major portion of their future work in silico, due to progressively refined computational tools… (more)

Subjects/Keywords: Center star method; Dynamic programming; Multiple protein structure alignment

…Motivation There are two main classes of applications for multiple protein structure alignment: 1… …protein families based on both structure and sequence. Here too, we use multiple alignment of… …structure, for i = 1 ... N and j = 1 ... Li . A multiple structural alignment of P is X = (… …detection [23], protein docking [24] and multiple protein sequence/structure… …Alignment . . . . . . . . . . . . . . . . . . 21 2.3 Structure Alignment… 

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Roy, K. (2014). Multiple Alignment of Structures using Center of Proteins. (Masters Thesis). University of Windsor. Retrieved from https://scholar.uwindsor.ca/etd/5175

Chicago Manual of Style (16th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Masters Thesis, University of Windsor. Accessed January 21, 2020. https://scholar.uwindsor.ca/etd/5175.

MLA Handbook (7th Edition):

Roy, Kaushik. “Multiple Alignment of Structures using Center of Proteins.” 2014. Web. 21 Jan 2020.

Vancouver:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Internet] [Masters thesis]. University of Windsor; 2014. [cited 2020 Jan 21]. Available from: https://scholar.uwindsor.ca/etd/5175.

Council of Science Editors:

Roy K. Multiple Alignment of Structures using Center of Proteins. [Masters Thesis]. University of Windsor; 2014. Available from: https://scholar.uwindsor.ca/etd/5175


University of Kansas

7. Sinha, Rohita. MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT.

Degree: PhD, Molecular Biosciences, 2011, University of Kansas

 Rapid accumulation of the experimental data on protein-protein complexes drives the paradigm shift in protein docking from "traditional" template free approaches to template based techniques.… (more)

Subjects/Keywords: Bioinformatics; Docking; Protein-protein interactions; Structure alignment; Template based modeling

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APA (6th Edition):

Sinha, R. (2011). MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT. (Doctoral Dissertation). University of Kansas. Retrieved from http://hdl.handle.net/1808/8197

Chicago Manual of Style (16th Edition):

Sinha, Rohita. “MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT.” 2011. Doctoral Dissertation, University of Kansas. Accessed January 21, 2020. http://hdl.handle.net/1808/8197.

MLA Handbook (7th Edition):

Sinha, Rohita. “MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT.” 2011. Web. 21 Jan 2020.

Vancouver:

Sinha R. MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT. [Internet] [Doctoral dissertation]. University of Kansas; 2011. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/1808/8197.

Council of Science Editors:

Sinha R. MODELING PROTEIN INTERACTIONS THROUGH STRUCTURE ALIGNMENT. [Doctoral Dissertation]. University of Kansas; 2011. Available from: http://hdl.handle.net/1808/8197


Indian Institute of Science

8. Bhattacharya, Sourangshu. Computational Protein Structure Analysis : Kernel And Spectral Methods.

Degree: 2008, Indian Institute of Science

 The focus of this thesis is to develop computational techniques for analysis of protein structures. We model protein structures as points in 3-dimensional space which… (more)

Subjects/Keywords: Protein - Structure; Protein Structure - Data Processing; Protein Structure Alignment; Kernel Method; Structural Bioinformatics; Spectral Graph Theory; Machine Learning; Neighborhood Alignments; Structural Alignment; Protein Structure Classification; Bioinformatics

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Bhattacharya, S. (2008). Computational Protein Structure Analysis : Kernel And Spectral Methods. (Thesis). Indian Institute of Science. Retrieved from http://hdl.handle.net/2005/831

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Bhattacharya, Sourangshu. “Computational Protein Structure Analysis : Kernel And Spectral Methods.” 2008. Thesis, Indian Institute of Science. Accessed January 21, 2020. http://hdl.handle.net/2005/831.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Bhattacharya, Sourangshu. “Computational Protein Structure Analysis : Kernel And Spectral Methods.” 2008. Web. 21 Jan 2020.

Vancouver:

Bhattacharya S. Computational Protein Structure Analysis : Kernel And Spectral Methods. [Internet] [Thesis]. Indian Institute of Science; 2008. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/2005/831.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Bhattacharya S. Computational Protein Structure Analysis : Kernel And Spectral Methods. [Thesis]. Indian Institute of Science; 2008. Available from: http://hdl.handle.net/2005/831

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Rochester Institute of Technology

9. Schulze, Katharina. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.

Degree: MS, Thomas H. Gosnell School of Life Sciences (COS), 2014, Rochester Institute of Technology

  Traditional transcription factor binding site analyses focus solely on the nucleotide composition of site despite the fact that more recent studies have shown transcription… (more)

Subjects/Keywords: DNA structure; Multiple sequence alignment; Transcription factor binding sites

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APA (6th Edition):

Schulze, K. (2014). Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. (Masters Thesis). Rochester Institute of Technology. Retrieved from https://scholarworks.rit.edu/theses/8368

Chicago Manual of Style (16th Edition):

Schulze, Katharina. “Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.” 2014. Masters Thesis, Rochester Institute of Technology. Accessed January 21, 2020. https://scholarworks.rit.edu/theses/8368.

MLA Handbook (7th Edition):

Schulze, Katharina. “Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.” 2014. Web. 21 Jan 2020.

Vancouver:

Schulze K. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. [Internet] [Masters thesis]. Rochester Institute of Technology; 2014. [cited 2020 Jan 21]. Available from: https://scholarworks.rit.edu/theses/8368.

Council of Science Editors:

Schulze K. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. [Masters Thesis]. Rochester Institute of Technology; 2014. Available from: https://scholarworks.rit.edu/theses/8368


University of Missouri – Columbia

10. Deng, Xin. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.

Degree: 2013, University of Missouri – Columbia

Protein sequence and profile alignment has been used essentially in most bioinformatics tasks such as protein structure modeling, function prediction, and phylogenetic analysis. We designed… (more)

Subjects/Keywords: protein sequence alignment; solvent accessibility; protein structure prediction; protein model selection; Amino acid sequence; Solvents  – Analysis; Sequence alignment (Bioinformatics)

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APA (6th Edition):

Deng, X. (2013). Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. (Thesis). University of Missouri – Columbia. Retrieved from http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Thesis, University of Missouri – Columbia. Accessed January 21, 2020. http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Web. 21 Jan 2020.

Vancouver:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Internet] [Thesis]. University of Missouri – Columbia; 2013. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Thesis]. University of Missouri – Columbia; 2013. Available from: http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Windsor

11. Panigrahi, Satish Chandra. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.

Degree: PhD, Computer Science, 2014, University of Windsor

  The theme of this dissertation is geometric optimization and its applications. We study geometric proximity problems and several bioinformatics problems with a geometric content,… (more)

Subjects/Keywords: Computational geometry; Geometric proximity; Linear programming; Protein structure alignment

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APA (6th Edition):

Panigrahi, S. C. (2014). GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. (Doctoral Dissertation). University of Windsor. Retrieved from http://scholar.uwindsor.ca/etd/5198

Chicago Manual of Style (16th Edition):

Panigrahi, Satish Chandra. “GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.” 2014. Doctoral Dissertation, University of Windsor. Accessed January 21, 2020. http://scholar.uwindsor.ca/etd/5198.

MLA Handbook (7th Edition):

Panigrahi, Satish Chandra. “GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS.” 2014. Web. 21 Jan 2020.

Vancouver:

Panigrahi SC. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. [Internet] [Doctoral dissertation]. University of Windsor; 2014. [cited 2020 Jan 21]. Available from: http://scholar.uwindsor.ca/etd/5198.

Council of Science Editors:

Panigrahi SC. GEOMETRIC OPTIMIZATION IN SOME PROXIMITY AND BIOINFORMATICS PROBLEMS. [Doctoral Dissertation]. University of Windsor; 2014. Available from: http://scholar.uwindsor.ca/etd/5198


NSYSU

12. Cheng, Rei-Sing. Protein Structure Prediction Based on Secondary Structure Alignment.

Degree: Master, Computer Science and Engineering, 2003, NSYSU

 Sequence alignment is a basic but powerful technique in molecular biology. Macromolecular sequences (DNA, RNA and protein sequences) can be aligned based on some criteria.… (more)

Subjects/Keywords: prediction; structure; alignment; protein; secondary structure

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Cheng, R. (2003). Protein Structure Prediction Based on Secondary Structure Alignment. (Thesis). NSYSU. Retrieved from http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Cheng, Rei-Sing. “Protein Structure Prediction Based on Secondary Structure Alignment.” 2003. Thesis, NSYSU. Accessed January 21, 2020. http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Cheng, Rei-Sing. “Protein Structure Prediction Based on Secondary Structure Alignment.” 2003. Web. 21 Jan 2020.

Vancouver:

Cheng R. Protein Structure Prediction Based on Secondary Structure Alignment. [Internet] [Thesis]. NSYSU; 2003. [cited 2020 Jan 21]. Available from: http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Cheng R. Protein Structure Prediction Based on Secondary Structure Alignment. [Thesis]. NSYSU; 2003. Available from: http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0821103-204917

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Saskatchewan

13. Islam, T M Rezwanul. CSA-X: Modularized Constrained Multiple Sequence Alignment.

Degree: 2015, University of Saskatchewan

 Imposing additional constraints on multiple sequence alignment (MSA) algorithms can often produce more biologically meaningful alignments. Hence, various constrained multiple sequence alignment (CMSA) algorithms have… (more)

Subjects/Keywords: Multiple Sequence Alignment; Constrained Multiple Sequence Alignment.

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Islam, T. M. R. (2015). CSA-X: Modularized Constrained Multiple Sequence Alignment. (Thesis). University of Saskatchewan. Retrieved from http://hdl.handle.net/10388/ETD-2015-10-2276

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Islam, T M Rezwanul. “CSA-X: Modularized Constrained Multiple Sequence Alignment.” 2015. Thesis, University of Saskatchewan. Accessed January 21, 2020. http://hdl.handle.net/10388/ETD-2015-10-2276.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Islam, T M Rezwanul. “CSA-X: Modularized Constrained Multiple Sequence Alignment.” 2015. Web. 21 Jan 2020.

Vancouver:

Islam TMR. CSA-X: Modularized Constrained Multiple Sequence Alignment. [Internet] [Thesis]. University of Saskatchewan; 2015. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/10388/ETD-2015-10-2276.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Islam TMR. CSA-X: Modularized Constrained Multiple Sequence Alignment. [Thesis]. University of Saskatchewan; 2015. Available from: http://hdl.handle.net/10388/ETD-2015-10-2276

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Montana Tech

14. Nord, Alex. Mirage: A Novel Multiple Protein Sequence Alignment Tool.

Degree: MS, 2017, Montana Tech

  A fundamental problem in computational biology is the organization of many related sequences into a multiple sequence alignment (MSA) [2]. MSAs have a range… (more)

Subjects/Keywords: multiple sequence alignment; computational biology; transitive sequence alignment; protein isoforms; alternative reading frames; Computer Sciences; Other Computer Sciences

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APA (6th Edition):

Nord, A. (2017). Mirage: A Novel Multiple Protein Sequence Alignment Tool. (Masters Thesis). Montana Tech. Retrieved from https://scholarworks.umt.edu/etd/11110

Chicago Manual of Style (16th Edition):

Nord, Alex. “Mirage: A Novel Multiple Protein Sequence Alignment Tool.” 2017. Masters Thesis, Montana Tech. Accessed January 21, 2020. https://scholarworks.umt.edu/etd/11110.

MLA Handbook (7th Edition):

Nord, Alex. “Mirage: A Novel Multiple Protein Sequence Alignment Tool.” 2017. Web. 21 Jan 2020.

Vancouver:

Nord A. Mirage: A Novel Multiple Protein Sequence Alignment Tool. [Internet] [Masters thesis]. Montana Tech; 2017. [cited 2020 Jan 21]. Available from: https://scholarworks.umt.edu/etd/11110.

Council of Science Editors:

Nord A. Mirage: A Novel Multiple Protein Sequence Alignment Tool. [Masters Thesis]. Montana Tech; 2017. Available from: https://scholarworks.umt.edu/etd/11110


Arizona State University

15. Ravichandran, Lakshminarayan. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.

Degree: PhD, Electrical Engineering, 2011, Arizona State University

 Genomic and proteomic sequences, which are in the form of deoxyribonucleic acid (DNA) and amino acids respectively, play a vital role in the structure, function… (more)

Subjects/Keywords: Engineering; Bioinformatics; Molecular Biology; chirp signal; classification; DNA sequence alignment; Gaussian signal; protein structure alignment; querying

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Ravichandran, L. (2011). Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. (Doctoral Dissertation). Arizona State University. Retrieved from http://repository.asu.edu/items/9483

Chicago Manual of Style (16th Edition):

Ravichandran, Lakshminarayan. “Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.” 2011. Doctoral Dissertation, Arizona State University. Accessed January 21, 2020. http://repository.asu.edu/items/9483.

MLA Handbook (7th Edition):

Ravichandran, Lakshminarayan. “Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.” 2011. Web. 21 Jan 2020.

Vancouver:

Ravichandran L. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. [Internet] [Doctoral dissertation]. Arizona State University; 2011. [cited 2020 Jan 21]. Available from: http://repository.asu.edu/items/9483.

Council of Science Editors:

Ravichandran L. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. [Doctoral Dissertation]. Arizona State University; 2011. Available from: http://repository.asu.edu/items/9483

16. Sun, Hong. DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT.

Degree: PhD, Computer Science and Engineering, 2011, The Ohio State University

  In the thesis, we focus on developing frameworks to comparing and aligning multiple geometric shape data. In particular, the research covers two main subjects:… (more)

Subjects/Keywords: Bioinformatics; Computer Engineering; Computer Science; multiple; protein; structure; alignment; folding; trajectory; Smolign; EPO

multiple protein structure alignment. More specifically we introduced a framework, namely Smolign… …SPATIAL MOTIFS BASED PROTEIN MULTIPLE STRUCTURAL ALIGNMENT METHOD… …selection approaches in the domain of multiple structure alignment, our method is the first one… …is quickly spread from multiple sequence alignment to multiple structure alignment. In… …10 2.1 Principle of Protein Structure . . . . . . 2.1.1 Overview… 

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Sun, H. (2011). DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT. (Doctoral Dissertation). The Ohio State University. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262

Chicago Manual of Style (16th Edition):

Sun, Hong. “DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT.” 2011. Doctoral Dissertation, The Ohio State University. Accessed January 21, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262.

MLA Handbook (7th Edition):

Sun, Hong. “DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT.” 2011. Web. 21 Jan 2020.

Vancouver:

Sun H. DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT. [Internet] [Doctoral dissertation]. The Ohio State University; 2011. [cited 2020 Jan 21]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262.

Council of Science Editors:

Sun H. DETECTING MULTIPLE PROTEIN FOLDING TRAJECTORIES AND STRUCTURAL ALIGNMENT. [Doctoral Dissertation]. The Ohio State University; 2011. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1319744262


University of Cincinnati

17. SUBRAMANIAN, SUCHITHA. PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL.

Degree: MS, Engineering : Computer Science, 2007, University of Cincinnati

 Currently many researchers are working on comparing proteins by aligning their sequences of amino acids. But the structural alignment of proteins is very important. This… (more)

Subjects/Keywords: Computer Science; Protein structure alignment; Euclidean Distance; coordinates of alpha-carbon atoms

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APA (6th Edition):

SUBRAMANIAN, S. (2007). PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL. (Masters Thesis). University of Cincinnati. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691

Chicago Manual of Style (16th Edition):

SUBRAMANIAN, SUCHITHA. “PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL.” 2007. Masters Thesis, University of Cincinnati. Accessed January 21, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691.

MLA Handbook (7th Edition):

SUBRAMANIAN, SUCHITHA. “PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL.” 2007. Web. 21 Jan 2020.

Vancouver:

SUBRAMANIAN S. PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL. [Internet] [Masters thesis]. University of Cincinnati; 2007. [cited 2020 Jan 21]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691.

Council of Science Editors:

SUBRAMANIAN S. PROTEIN STRUCTURE ALIGNMENT USING A GENERALIZED ALIGNMENT MODEL. [Masters Thesis]. University of Cincinnati; 2007. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=ucin1191966691


Northeastern University

18. Leslin, Chesley. Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis.

Degree: PhD, Department of Biology, 2010, Northeastern University

 Until recently non-sequential alignments were poorly recognized and the significance of their existence remained unresolved. Here I present findings from a comprehensive study which reveals… (more)

Subjects/Keywords: bioinformatics; non-sequential alignments; PDB; protein structure comparison; structure alignment; TOPOFIT; Proteins - Classification - Databases; Biology; Databases and Information Systems

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APA (6th Edition):

Leslin, C. (2010). Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis. (Doctoral Dissertation). Northeastern University. Retrieved from http://hdl.handle.net/2047/d20000125

Chicago Manual of Style (16th Edition):

Leslin, Chesley. “Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis.” 2010. Doctoral Dissertation, Northeastern University. Accessed January 21, 2020. http://hdl.handle.net/2047/d20000125.

MLA Handbook (7th Edition):

Leslin, Chesley. “Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis.” 2010. Web. 21 Jan 2020.

Vancouver:

Leslin C. Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis. [Internet] [Doctoral dissertation]. Northeastern University; 2010. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/2047/d20000125.

Council of Science Editors:

Leslin C. Widespread occurrence of non-sequential alignments and the implication for protein structure classification ; Widespread occurrence of non-sequential alignments and the implication for protein structure classification: TOPOFIT-DB, an interface to current, visual protein structure analysis. [Doctoral Dissertation]. Northeastern University; 2010. Available from: http://hdl.handle.net/2047/d20000125


Texas A&M University

19. Lu, Yue. Improving the quality of multiple sequence alignment.

Degree: 2009, Texas A&M University

Multiple sequence alignment is an important bioinformatics problem, with applications in diverse types of biological analysis, such as structure prediction, phylogenetic analysis and critical sites… (more)

Subjects/Keywords: Multiple Sequence Alignment; Algorithms; Bioinformatics

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APA (6th Edition):

Lu, Y. (2009). Improving the quality of multiple sequence alignment. (Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/ETD-TAMU-3111

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Lu, Yue. “Improving the quality of multiple sequence alignment.” 2009. Thesis, Texas A&M University. Accessed January 21, 2020. http://hdl.handle.net/1969.1/ETD-TAMU-3111.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Lu, Yue. “Improving the quality of multiple sequence alignment.” 2009. Web. 21 Jan 2020.

Vancouver:

Lu Y. Improving the quality of multiple sequence alignment. [Internet] [Thesis]. Texas A&M University; 2009. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-3111.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Lu Y. Improving the quality of multiple sequence alignment. [Thesis]. Texas A&M University; 2009. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-3111

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Vrije Universiteit Amsterdam

20. Pirovano, W.A. Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features .

Degree: 2010, Vrije Universiteit Amsterdam

Subjects/Keywords: Comparing building blocks of life: evaluation of predicted structural and functional features; Multiple sequence alignment; protein sequence analysis; protein structure prediction; protein function prediction; transmembrane proteins; protein subfamilies; specificity determining residues;

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APA (6th Edition):

Pirovano, W. A. (2010). Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features . (Doctoral Dissertation). Vrije Universiteit Amsterdam. Retrieved from http://hdl.handle.net/1871/15597

Chicago Manual of Style (16th Edition):

Pirovano, W A. “Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features .” 2010. Doctoral Dissertation, Vrije Universiteit Amsterdam. Accessed January 21, 2020. http://hdl.handle.net/1871/15597.

MLA Handbook (7th Edition):

Pirovano, W A. “Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features .” 2010. Web. 21 Jan 2020.

Vancouver:

Pirovano WA. Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features . [Internet] [Doctoral dissertation]. Vrije Universiteit Amsterdam; 2010. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/1871/15597.

Council of Science Editors:

Pirovano WA. Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features . [Doctoral Dissertation]. Vrije Universiteit Amsterdam; 2010. Available from: http://hdl.handle.net/1871/15597


University of Guelph

21. Fayaz, Ehsan. The 18.5-kDa Myelin Basic Protein has Loose Tertiary Contacts Regulated by Zinc and Post-Translational Modification .

Degree: 2011, University of Guelph

 Myelin basic protein (MBP) has fascinated researchers and clinicians alike due to its major structural role in myelin and the central nervous system, and its… (more)

Subjects/Keywords: Myelin; MBP; Protein; unstructured; fluorescence; saxs; oligomerization; demyelination; multiple sclerosis; disordered; zinc; divalent cations; structure

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APA (6th Edition):

Fayaz, E. (2011). The 18.5-kDa Myelin Basic Protein has Loose Tertiary Contacts Regulated by Zinc and Post-Translational Modification . (Thesis). University of Guelph. Retrieved from https://atrium.lib.uoguelph.ca/xmlui/handle/10214/3202

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Fayaz, Ehsan. “The 18.5-kDa Myelin Basic Protein has Loose Tertiary Contacts Regulated by Zinc and Post-Translational Modification .” 2011. Thesis, University of Guelph. Accessed January 21, 2020. https://atrium.lib.uoguelph.ca/xmlui/handle/10214/3202.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Fayaz, Ehsan. “The 18.5-kDa Myelin Basic Protein has Loose Tertiary Contacts Regulated by Zinc and Post-Translational Modification .” 2011. Web. 21 Jan 2020.

Vancouver:

Fayaz E. The 18.5-kDa Myelin Basic Protein has Loose Tertiary Contacts Regulated by Zinc and Post-Translational Modification . [Internet] [Thesis]. University of Guelph; 2011. [cited 2020 Jan 21]. Available from: https://atrium.lib.uoguelph.ca/xmlui/handle/10214/3202.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Fayaz E. The 18.5-kDa Myelin Basic Protein has Loose Tertiary Contacts Regulated by Zinc and Post-Translational Modification . [Thesis]. University of Guelph; 2011. Available from: https://atrium.lib.uoguelph.ca/xmlui/handle/10214/3202

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Queens University

22. Ahmed, Hazem Radwan A. Pattern Discovery in Protein Structures and Interaction Networks .

Degree: Computing, 2014, Queens University

 Pattern discovery in protein structures is a fundamental task in computational biology, with important applications in protein structure prediction, profiling and alignment. We propose a… (more)

Subjects/Keywords: 3D Structural Motif Matching; Protein Structure Classification; Protein Structure Alignment; Protein Interaction Networks; Protein-Protein Interaction Prediction; Multi-Start Particle Swarm Optimization; Fitness-based Agile Restart; Efficient Stagnation Detection; Proteomic Pattern Matching and Discovery; Protein Contact Maps

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APA (6th Edition):

Ahmed, H. R. A. (2014). Pattern Discovery in Protein Structures and Interaction Networks . (Thesis). Queens University. Retrieved from http://hdl.handle.net/1974/12051

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Ahmed, Hazem Radwan A. “Pattern Discovery in Protein Structures and Interaction Networks .” 2014. Thesis, Queens University. Accessed January 21, 2020. http://hdl.handle.net/1974/12051.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Ahmed, Hazem Radwan A. “Pattern Discovery in Protein Structures and Interaction Networks .” 2014. Web. 21 Jan 2020.

Vancouver:

Ahmed HRA. Pattern Discovery in Protein Structures and Interaction Networks . [Internet] [Thesis]. Queens University; 2014. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/1974/12051.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Ahmed HRA. Pattern Discovery in Protein Structures and Interaction Networks . [Thesis]. Queens University; 2014. Available from: http://hdl.handle.net/1974/12051

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brno University of Technology

23. Trlica, Jiří. Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů .

Degree: 2013, Brno University of Technology

 Porovnání trojrozměrných struktur proteinů má zásadní význam pro molekulární biologii. Jedním z nejvýznamnějších je možnost odvodit funkci neznámého proteinu od strukturně podobného proteinu, jehož funkce… (more)

Subjects/Keywords: Aminokyselina; proteinové struktury; zarovnání proteinových struktur; porovnání proteinových foldů; software pro strukturní zarovnání; DALI; LOCK; MUSTANG; SPALIGN; CLICK; ROC.; Amino acid; protein structures; protein structure alignment; protein fold comparison; structural alignment software; DALI; LOCK; MUSTANG; SPALIGN; CLICK; ROC.

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APA (6th Edition):

Trlica, J. (2013). Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů . (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/54854

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Trlica, Jiří. “Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů .” 2013. Thesis, Brno University of Technology. Accessed January 21, 2020. http://hdl.handle.net/11012/54854.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Trlica, Jiří. “Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů .” 2013. Web. 21 Jan 2020.

Vancouver:

Trlica J. Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů . [Internet] [Thesis]. Brno University of Technology; 2013. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/11012/54854.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Trlica J. Analýza nástrojů pro zjišťování podobnosti terciárních struktur proteinů . [Thesis]. Brno University of Technology; 2013. Available from: http://hdl.handle.net/11012/54854

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


The Ohio State University

24. Ozer, Hatice Gulcin. Residue Associations In Protein Family Alignments.

Degree: PhD, Biophysics, 2008, The Ohio State University

  The increasing amount of data on biomolecule sequences and their multiple alignments for families, has promoted an interest in discovering structural and functional characteristics… (more)

Subjects/Keywords: Bioinformatics; Biophysics; Family Alignment; Positional Dependency; Amino Acid Correlation; Residue Correlation; Residue Association; Protein Sequence; Protein Structure; Pfam database; Bioinformatics; Fisher Exact test; Phi coefficient

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APA (6th Edition):

Ozer, H. G. (2008). Residue Associations In Protein Family Alignments. (Doctoral Dissertation). The Ohio State University. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026

Chicago Manual of Style (16th Edition):

Ozer, Hatice Gulcin. “Residue Associations In Protein Family Alignments.” 2008. Doctoral Dissertation, The Ohio State University. Accessed January 21, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026.

MLA Handbook (7th Edition):

Ozer, Hatice Gulcin. “Residue Associations In Protein Family Alignments.” 2008. Web. 21 Jan 2020.

Vancouver:

Ozer HG. Residue Associations In Protein Family Alignments. [Internet] [Doctoral dissertation]. The Ohio State University; 2008. [cited 2020 Jan 21]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026.

Council of Science Editors:

Ozer HG. Residue Associations In Protein Family Alignments. [Doctoral Dissertation]. The Ohio State University; 2008. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=osu1211570026


University of Waterloo

25. Hui, Shirley. FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach.

Degree: 2005, University of Waterloo

 A topic of research that is frequently studied in Structural Biology is the problem of determining the degree of similarity between two protein structures. The… (more)

Subjects/Keywords: Computer Science; dimensionality reduction; flexible protein structural alignment; protein structure; principal component analysis

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APA (6th Edition):

Hui, S. (2005). FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/1173

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Hui, Shirley. “FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach.” 2005. Thesis, University of Waterloo. Accessed January 21, 2020. http://hdl.handle.net/10012/1173.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Hui, Shirley. “FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach.” 2005. Web. 21 Jan 2020.

Vancouver:

Hui S. FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach. [Internet] [Thesis]. University of Waterloo; 2005. [cited 2020 Jan 21]. Available from: http://hdl.handle.net/10012/1173.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Hui S. FlexSADRA: Flexible Structural Alignment using a Dimensionality Reduction Approach. [Thesis]. University of Waterloo; 2005. Available from: http://hdl.handle.net/10012/1173

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Freie Universität Berlin

26. Gürler, Aysam. Strategien für die strukturbasierte Analyse der Proteinfunktionalität.

Degree: 2009, Freie Universität Berlin

 In dieser Arbeit werden die Entwicklung und die Ergebnisse der nicht- sequentiellen Proteinstrukturüberlagerungsmethode GANGSTA+ vorgestellt. Die Methode löst das Strukturüberlagerungsproblem stufenweise und bestimmt zu Anfang… (more)

Subjects/Keywords: nonsequential protein structure alignment; novel protein fold; protein fold space; protein structure/folding; 500 Naturwissenschaften und Mathematik::540 Chemie::548 Kristallografie

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APA (6th Edition):

Gürler, A. (2009). Strategien für die strukturbasierte Analyse der Proteinfunktionalität. (Thesis). Freie Universität Berlin. Retrieved from https://refubium.fu-berlin.de/handle/fub188/11604

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Gürler, Aysam. “Strategien für die strukturbasierte Analyse der Proteinfunktionalität.” 2009. Thesis, Freie Universität Berlin. Accessed January 21, 2020. https://refubium.fu-berlin.de/handle/fub188/11604.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Gürler, Aysam. “Strategien für die strukturbasierte Analyse der Proteinfunktionalität.” 2009. Web. 21 Jan 2020.

Vancouver:

Gürler A. Strategien für die strukturbasierte Analyse der Proteinfunktionalität. [Internet] [Thesis]. Freie Universität Berlin; 2009. [cited 2020 Jan 21]. Available from: https://refubium.fu-berlin.de/handle/fub188/11604.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Gürler A. Strategien für die strukturbasierte Analyse der Proteinfunktionalität. [Thesis]. Freie Universität Berlin; 2009. Available from: https://refubium.fu-berlin.de/handle/fub188/11604

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Georgia

27. Wang, Xuting. Multiple sequence alignment using traveling salesman problem algorithms.

Degree: MS, Computer Science, 2002, University of Georgia

 The construction of multiple sequence alignments (MSAs) is a fundamental problem in computational biology, but computing an optimal MSA is NP-hard. It is therefore necessary… (more)

Subjects/Keywords: multiple sequence alignment

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APA (6th Edition):

Wang, X. (2002). Multiple sequence alignment using traveling salesman problem algorithms. (Masters Thesis). University of Georgia. Retrieved from http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms

Chicago Manual of Style (16th Edition):

Wang, Xuting. “Multiple sequence alignment using traveling salesman problem algorithms.” 2002. Masters Thesis, University of Georgia. Accessed January 21, 2020. http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms.

MLA Handbook (7th Edition):

Wang, Xuting. “Multiple sequence alignment using traveling salesman problem algorithms.” 2002. Web. 21 Jan 2020.

Vancouver:

Wang X. Multiple sequence alignment using traveling salesman problem algorithms. [Internet] [Masters thesis]. University of Georgia; 2002. [cited 2020 Jan 21]. Available from: http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms.

Council of Science Editors:

Wang X. Multiple sequence alignment using traveling salesman problem algorithms. [Masters Thesis]. University of Georgia; 2002. Available from: http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms


University of Georgia

28. Liu, Renyi. Strategies for improving multiple alignment of retrotransposon sequences.

Degree: MS, Computer Science, 2001, University of Georgia

Multiple sequence alignment plays a crucial role in extracting structural, functional, and evolutionary information from the exponentially growing sequence data from the ongoing genome sequencing.… (more)

Subjects/Keywords: Multiple sequence alignment

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APA (6th Edition):

Liu, R. (2001). Strategies for improving multiple alignment of retrotransposon sequences. (Masters Thesis). University of Georgia. Retrieved from http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms

Chicago Manual of Style (16th Edition):

Liu, Renyi. “Strategies for improving multiple alignment of retrotransposon sequences.” 2001. Masters Thesis, University of Georgia. Accessed January 21, 2020. http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms.

MLA Handbook (7th Edition):

Liu, Renyi. “Strategies for improving multiple alignment of retrotransposon sequences.” 2001. Web. 21 Jan 2020.

Vancouver:

Liu R. Strategies for improving multiple alignment of retrotransposon sequences. [Internet] [Masters thesis]. University of Georgia; 2001. [cited 2020 Jan 21]. Available from: http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms.

Council of Science Editors:

Liu R. Strategies for improving multiple alignment of retrotransposon sequences. [Masters Thesis]. University of Georgia; 2001. Available from: http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms

29. Amouda, A. Self organizing genetic algorithm for multiple sequence alignment; -.

Degree: Computer Science, 2011, Pondicherry University

Genetic Algorithms (GA) are adaptive search techniques used to solve difficult optimization problem of huge search space in various scientific domains. To solve complex problems… (more)

Subjects/Keywords: Self organizing genetic algorithm; multiple sequence alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Amouda, A. (2011). Self organizing genetic algorithm for multiple sequence alignment; -. (Thesis). Pondicherry University. Retrieved from http://shodhganga.inflibnet.ac.in/handle/10603/5296

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Amouda, A. “Self organizing genetic algorithm for multiple sequence alignment; -.” 2011. Thesis, Pondicherry University. Accessed January 21, 2020. http://shodhganga.inflibnet.ac.in/handle/10603/5296.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Amouda, A. “Self organizing genetic algorithm for multiple sequence alignment; -.” 2011. Web. 21 Jan 2020.

Vancouver:

Amouda A. Self organizing genetic algorithm for multiple sequence alignment; -. [Internet] [Thesis]. Pondicherry University; 2011. [cited 2020 Jan 21]. Available from: http://shodhganga.inflibnet.ac.in/handle/10603/5296.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Amouda A. Self organizing genetic algorithm for multiple sequence alignment; -. [Thesis]. Pondicherry University; 2011. Available from: http://shodhganga.inflibnet.ac.in/handle/10603/5296

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Penn State University

30. Hsu, Chih-Hao. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.

Degree: PhD, Computer Science and Engineering, 2009, Penn State University

 The problem of computing a multiple-sequence alignment (MSA) is very important for the analysis of biological sequences. An equally critical problem is to evaluate the… (more)

Subjects/Keywords: Evolution; Gene conversion; Orthology; Multiple-Sequence Alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Hsu, C. (2009). INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. (Doctoral Dissertation). Penn State University. Retrieved from https://etda.libraries.psu.edu/catalog/10267

Chicago Manual of Style (16th Edition):

Hsu, Chih-Hao. “INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.” 2009. Doctoral Dissertation, Penn State University. Accessed January 21, 2020. https://etda.libraries.psu.edu/catalog/10267.

MLA Handbook (7th Edition):

Hsu, Chih-Hao. “INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.” 2009. Web. 21 Jan 2020.

Vancouver:

Hsu C. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. [Internet] [Doctoral dissertation]. Penn State University; 2009. [cited 2020 Jan 21]. Available from: https://etda.libraries.psu.edu/catalog/10267.

Council of Science Editors:

Hsu C. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. [Doctoral Dissertation]. Penn State University; 2009. Available from: https://etda.libraries.psu.edu/catalog/10267

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