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You searched for subject:(Multiple DNA sequence alignment). Showing records 1 – 30 of 23772 total matches.

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University of Saskatchewan

1. Islam, T M Rezwanul. CSA-X: Modularized Constrained Multiple Sequence Alignment.

Degree: 2015, University of Saskatchewan

 Imposing additional constraints on multiple sequence alignment (MSA) algorithms can often produce more biologically meaningful alignments. Hence, various constrained multiple sequence alignment (CMSA) algorithms have… (more)

Subjects/Keywords: Multiple Sequence Alignment; Constrained Multiple Sequence Alignment.

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APA (6th Edition):

Islam, T. M. R. (2015). CSA-X: Modularized Constrained Multiple Sequence Alignment. (Thesis). University of Saskatchewan. Retrieved from http://hdl.handle.net/10388/ETD-2015-10-2276

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Islam, T M Rezwanul. “CSA-X: Modularized Constrained Multiple Sequence Alignment.” 2015. Thesis, University of Saskatchewan. Accessed October 14, 2019. http://hdl.handle.net/10388/ETD-2015-10-2276.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Islam, T M Rezwanul. “CSA-X: Modularized Constrained Multiple Sequence Alignment.” 2015. Web. 14 Oct 2019.

Vancouver:

Islam TMR. CSA-X: Modularized Constrained Multiple Sequence Alignment. [Internet] [Thesis]. University of Saskatchewan; 2015. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/10388/ETD-2015-10-2276.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Islam TMR. CSA-X: Modularized Constrained Multiple Sequence Alignment. [Thesis]. University of Saskatchewan; 2015. Available from: http://hdl.handle.net/10388/ETD-2015-10-2276

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Rochester Institute of Technology

2. Schulze, Katharina. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.

Degree: MS, Thomas H. Gosnell School of Life Sciences (COS), 2014, Rochester Institute of Technology

  Traditional transcription factor binding site analyses focus solely on the nucleotide composition of site despite the fact that more recent studies have shown transcription… (more)

Subjects/Keywords: DNA structure; Multiple sequence alignment; Transcription factor binding sites

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APA (6th Edition):

Schulze, K. (2014). Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. (Masters Thesis). Rochester Institute of Technology. Retrieved from https://scholarworks.rit.edu/theses/8368

Chicago Manual of Style (16th Edition):

Schulze, Katharina. “Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.” 2014. Masters Thesis, Rochester Institute of Technology. Accessed October 14, 2019. https://scholarworks.rit.edu/theses/8368.

MLA Handbook (7th Edition):

Schulze, Katharina. “Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment.” 2014. Web. 14 Oct 2019.

Vancouver:

Schulze K. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. [Internet] [Masters thesis]. Rochester Institute of Technology; 2014. [cited 2019 Oct 14]. Available from: https://scholarworks.rit.edu/theses/8368.

Council of Science Editors:

Schulze K. Identification of Structural Signatures Within Transcription Factor Binding Sites and Their Flanking Regions in Saccharomyces cerevisiae Enhanced Through ΔTRX Based Multiple Sequence Alignment. [Masters Thesis]. Rochester Institute of Technology; 2014. Available from: https://scholarworks.rit.edu/theses/8368


Texas A&M University

3. Lu, Yue. Improving the quality of multiple sequence alignment.

Degree: 2009, Texas A&M University

Multiple sequence alignment is an important bioinformatics problem, with applications in diverse types of biological analysis, such as structure prediction, phylogenetic analysis and critical sites… (more)

Subjects/Keywords: Multiple Sequence Alignment; Algorithms; Bioinformatics

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APA (6th Edition):

Lu, Y. (2009). Improving the quality of multiple sequence alignment. (Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/ETD-TAMU-3111

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Lu, Yue. “Improving the quality of multiple sequence alignment.” 2009. Thesis, Texas A&M University. Accessed October 14, 2019. http://hdl.handle.net/1969.1/ETD-TAMU-3111.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Lu, Yue. “Improving the quality of multiple sequence alignment.” 2009. Web. 14 Oct 2019.

Vancouver:

Lu Y. Improving the quality of multiple sequence alignment. [Internet] [Thesis]. Texas A&M University; 2009. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-3111.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Lu Y. Improving the quality of multiple sequence alignment. [Thesis]. Texas A&M University; 2009. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-3111

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Addis Ababa University

4. Addisu, Galassa. Design and Performance Evaluation of Hybrid Intelligent System- based Algorithm for Multiple DNA Sequence Alignment .

Degree: 2012, Addis Ababa University

 In this thesis work, a method to align multiple DNA sequences is designed. The proposed design is an intelligent system based hybrid algorithm of two… (more)

Subjects/Keywords: Multiple DNA sequence alignment; Tabu Search and FPGA based TS; Genetic Algorithm; Hybrid system

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APA (6th Edition):

Addisu, G. (2012). Design and Performance Evaluation of Hybrid Intelligent System- based Algorithm for Multiple DNA Sequence Alignment . (Thesis). Addis Ababa University. Retrieved from http://etd.aau.edu.et/dspace/handle/123456789/4473

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Addisu, Galassa. “Design and Performance Evaluation of Hybrid Intelligent System- based Algorithm for Multiple DNA Sequence Alignment .” 2012. Thesis, Addis Ababa University. Accessed October 14, 2019. http://etd.aau.edu.et/dspace/handle/123456789/4473.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Addisu, Galassa. “Design and Performance Evaluation of Hybrid Intelligent System- based Algorithm for Multiple DNA Sequence Alignment .” 2012. Web. 14 Oct 2019.

Vancouver:

Addisu G. Design and Performance Evaluation of Hybrid Intelligent System- based Algorithm for Multiple DNA Sequence Alignment . [Internet] [Thesis]. Addis Ababa University; 2012. [cited 2019 Oct 14]. Available from: http://etd.aau.edu.et/dspace/handle/123456789/4473.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Addisu G. Design and Performance Evaluation of Hybrid Intelligent System- based Algorithm for Multiple DNA Sequence Alignment . [Thesis]. Addis Ababa University; 2012. Available from: http://etd.aau.edu.et/dspace/handle/123456789/4473

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Georgia

5. Wang, Xuting. Multiple sequence alignment using traveling salesman problem algorithms.

Degree: MS, Computer Science, 2002, University of Georgia

 The construction of multiple sequence alignments (MSAs) is a fundamental problem in computational biology, but computing an optimal MSA is NP-hard. It is therefore necessary… (more)

Subjects/Keywords: multiple sequence alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Wang, X. (2002). Multiple sequence alignment using traveling salesman problem algorithms. (Masters Thesis). University of Georgia. Retrieved from http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms

Chicago Manual of Style (16th Edition):

Wang, Xuting. “Multiple sequence alignment using traveling salesman problem algorithms.” 2002. Masters Thesis, University of Georgia. Accessed October 14, 2019. http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms.

MLA Handbook (7th Edition):

Wang, Xuting. “Multiple sequence alignment using traveling salesman problem algorithms.” 2002. Web. 14 Oct 2019.

Vancouver:

Wang X. Multiple sequence alignment using traveling salesman problem algorithms. [Internet] [Masters thesis]. University of Georgia; 2002. [cited 2019 Oct 14]. Available from: http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms.

Council of Science Editors:

Wang X. Multiple sequence alignment using traveling salesman problem algorithms. [Masters Thesis]. University of Georgia; 2002. Available from: http://purl.galileo.usg.edu/uga_etd/wang_xuting_200205_ms


University of Georgia

6. Liu, Renyi. Strategies for improving multiple alignment of retrotransposon sequences.

Degree: MS, Computer Science, 2001, University of Georgia

Multiple sequence alignment plays a crucial role in extracting structural, functional, and evolutionary information from the exponentially growing sequence data from the ongoing genome sequencing.… (more)

Subjects/Keywords: Multiple sequence alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Liu, R. (2001). Strategies for improving multiple alignment of retrotransposon sequences. (Masters Thesis). University of Georgia. Retrieved from http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms

Chicago Manual of Style (16th Edition):

Liu, Renyi. “Strategies for improving multiple alignment of retrotransposon sequences.” 2001. Masters Thesis, University of Georgia. Accessed October 14, 2019. http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms.

MLA Handbook (7th Edition):

Liu, Renyi. “Strategies for improving multiple alignment of retrotransposon sequences.” 2001. Web. 14 Oct 2019.

Vancouver:

Liu R. Strategies for improving multiple alignment of retrotransposon sequences. [Internet] [Masters thesis]. University of Georgia; 2001. [cited 2019 Oct 14]. Available from: http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms.

Council of Science Editors:

Liu R. Strategies for improving multiple alignment of retrotransposon sequences. [Masters Thesis]. University of Georgia; 2001. Available from: http://purl.galileo.usg.edu/uga_etd/liu_renyi_200108_ms

7. Amouda, A. Self organizing genetic algorithm for multiple sequence alignment; -.

Degree: Computer Science, 2011, Pondicherry University

Genetic Algorithms (GA) are adaptive search techniques used to solve difficult optimization problem of huge search space in various scientific domains. To solve complex problems… (more)

Subjects/Keywords: Self organizing genetic algorithm; multiple sequence alignment

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APA (6th Edition):

Amouda, A. (2011). Self organizing genetic algorithm for multiple sequence alignment; -. (Thesis). Pondicherry University. Retrieved from http://shodhganga.inflibnet.ac.in/handle/10603/5296

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Amouda, A. “Self organizing genetic algorithm for multiple sequence alignment; -.” 2011. Thesis, Pondicherry University. Accessed October 14, 2019. http://shodhganga.inflibnet.ac.in/handle/10603/5296.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Amouda, A. “Self organizing genetic algorithm for multiple sequence alignment; -.” 2011. Web. 14 Oct 2019.

Vancouver:

Amouda A. Self organizing genetic algorithm for multiple sequence alignment; -. [Internet] [Thesis]. Pondicherry University; 2011. [cited 2019 Oct 14]. Available from: http://shodhganga.inflibnet.ac.in/handle/10603/5296.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Amouda A. Self organizing genetic algorithm for multiple sequence alignment; -. [Thesis]. Pondicherry University; 2011. Available from: http://shodhganga.inflibnet.ac.in/handle/10603/5296

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Penn State University

8. Hsu, Chih-Hao. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.

Degree: PhD, Computer Science and Engineering, 2009, Penn State University

 The problem of computing a multiple-sequence alignment (MSA) is very important for the analysis of biological sequences. An equally critical problem is to evaluate the… (more)

Subjects/Keywords: Evolution; Gene conversion; Orthology; Multiple-Sequence Alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Hsu, C. (2009). INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. (Doctoral Dissertation). Penn State University. Retrieved from https://etda.libraries.psu.edu/catalog/10267

Chicago Manual of Style (16th Edition):

Hsu, Chih-Hao. “INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.” 2009. Doctoral Dissertation, Penn State University. Accessed October 14, 2019. https://etda.libraries.psu.edu/catalog/10267.

MLA Handbook (7th Edition):

Hsu, Chih-Hao. “INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS.” 2009. Web. 14 Oct 2019.

Vancouver:

Hsu C. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. [Internet] [Doctoral dissertation]. Penn State University; 2009. [cited 2019 Oct 14]. Available from: https://etda.libraries.psu.edu/catalog/10267.

Council of Science Editors:

Hsu C. INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS. [Doctoral Dissertation]. Penn State University; 2009. Available from: https://etda.libraries.psu.edu/catalog/10267


University of Saskatchewan

9. Jin, Lingling. Multiple sequence alignment augmented by expert user constraints.

Degree: 2010, University of Saskatchewan

Sequence alignment has become one of the most common tasks in bioinformatics. Most of the existing sequence alignment methods use general scoring schemes. But these… (more)

Subjects/Keywords: multiple sequence alignment; constraint; compatible constraint set

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APA (6th Edition):

Jin, L. (2010). Multiple sequence alignment augmented by expert user constraints. (Thesis). University of Saskatchewan. Retrieved from http://hdl.handle.net/10388/etd-04092010-093748

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Jin, Lingling. “Multiple sequence alignment augmented by expert user constraints.” 2010. Thesis, University of Saskatchewan. Accessed October 14, 2019. http://hdl.handle.net/10388/etd-04092010-093748.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Jin, Lingling. “Multiple sequence alignment augmented by expert user constraints.” 2010. Web. 14 Oct 2019.

Vancouver:

Jin L. Multiple sequence alignment augmented by expert user constraints. [Internet] [Thesis]. University of Saskatchewan; 2010. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/10388/etd-04092010-093748.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Jin L. Multiple sequence alignment augmented by expert user constraints. [Thesis]. University of Saskatchewan; 2010. Available from: http://hdl.handle.net/10388/etd-04092010-093748

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Houston

10. -7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.

Degree: Biology and Biochemistry, Department of, 2015, University of Houston

 This dissertation consists of a study of the effects of multiple-alignment method on phylogenetic analyses. First, I investigated the effects of multiple-sequence alignment quality on… (more)

Subjects/Keywords: Multiple-sequence alignment; alignment refining; protein sequence evolution; branch-length estimation; phylogenetic trees; mammals

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APA (6th Edition):

-7998-0272. (2015). Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. (Thesis). University of Houston. Retrieved from http://hdl.handle.net/10657/1741

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

-7998-0272. “Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.” 2015. Thesis, University of Houston. Accessed October 14, 2019. http://hdl.handle.net/10657/1741.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

-7998-0272. “Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses.” 2015. Web. 14 Oct 2019.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Vancouver:

-7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. [Internet] [Thesis]. University of Houston; 2015. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/10657/1741.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

-7998-0272. Alignment- and Alignment-refining Algorithms: Effects on Branch-length Estimation and Selection Pattern Analyses. [Thesis]. University of Houston; 2015. Available from: http://hdl.handle.net/10657/1741

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation


Georgia State University

11. Nguyen, Ken D. Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations.

Degree: PhD, Computer Science, 2011, Georgia State University

  Aligning multiple biological sequences such as protein sequences or DNA/RNA sequences is a fundamental task in bioinformatics and sequence analysis. These alignments may contain… (more)

Subjects/Keywords: Multiple sequence alignments; Parallel multiple sequence alignment Algorithms; Reliability in multiple sequence alignments; Algorithms; Scoring functions; Computer Sciences

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Nguyen, K. D. (2011). Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations. (Doctoral Dissertation). Georgia State University. Retrieved from https://scholarworks.gsu.edu/cs_diss/62

Chicago Manual of Style (16th Edition):

Nguyen, Ken D. “Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations.” 2011. Doctoral Dissertation, Georgia State University. Accessed October 14, 2019. https://scholarworks.gsu.edu/cs_diss/62.

MLA Handbook (7th Edition):

Nguyen, Ken D. “Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations.” 2011. Web. 14 Oct 2019.

Vancouver:

Nguyen KD. Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations. [Internet] [Doctoral dissertation]. Georgia State University; 2011. [cited 2019 Oct 14]. Available from: https://scholarworks.gsu.edu/cs_diss/62.

Council of Science Editors:

Nguyen KD. Multiple Biolgical Sequence Alignment: Scoring Functions, Algorithms, and Evaluations. [Doctoral Dissertation]. Georgia State University; 2011. Available from: https://scholarworks.gsu.edu/cs_diss/62


Universidade Nova

12. Guasco, Luciano M. Multiple sequence alignment correction using constraints.

Degree: 2010, Universidade Nova

Trabalho apresentado no âmbito do European Master in Computational Logics, como requisito parcial para obtenção do grau de Mestre em Computational Logics

One of the… (more)

Subjects/Keywords: Multiple sequence alignment; Molecular coevolution; Mutual information; Constraints; Amino acids correlation

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APA (6th Edition):

Guasco, L. M. (2010). Multiple sequence alignment correction using constraints. (Thesis). Universidade Nova. Retrieved from http://www.rcaap.pt/detail.jsp?id=oai:run.unl.pt:10362/5143

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Guasco, Luciano M. “Multiple sequence alignment correction using constraints.” 2010. Thesis, Universidade Nova. Accessed October 14, 2019. http://www.rcaap.pt/detail.jsp?id=oai:run.unl.pt:10362/5143.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Guasco, Luciano M. “Multiple sequence alignment correction using constraints.” 2010. Web. 14 Oct 2019.

Vancouver:

Guasco LM. Multiple sequence alignment correction using constraints. [Internet] [Thesis]. Universidade Nova; 2010. [cited 2019 Oct 14]. Available from: http://www.rcaap.pt/detail.jsp?id=oai:run.unl.pt:10362/5143.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Guasco LM. Multiple sequence alignment correction using constraints. [Thesis]. Universidade Nova; 2010. Available from: http://www.rcaap.pt/detail.jsp?id=oai:run.unl.pt:10362/5143

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Virginia Tech

13. Hossain, K.S.M. Tozammel. Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings.

Degree: PhD, Computer Science, 2016, Virginia Tech

 Residue coupling in protein families has received much attention as an important indicator toward predicting protein structures and revealing functional insight into proteins. Existing coupling… (more)

Subjects/Keywords: residue coupling; multiple sequence alignment; graphical models; pattern set mining

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Hossain, K. S. M. T. (2016). Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings. (Doctoral Dissertation). Virginia Tech. Retrieved from http://hdl.handle.net/10919/83218

Chicago Manual of Style (16th Edition):

Hossain, K S M Tozammel. “Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings.” 2016. Doctoral Dissertation, Virginia Tech. Accessed October 14, 2019. http://hdl.handle.net/10919/83218.

MLA Handbook (7th Edition):

Hossain, K S M Tozammel. “Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings.” 2016. Web. 14 Oct 2019.

Vancouver:

Hossain KSMT. Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings. [Internet] [Doctoral dissertation]. Virginia Tech; 2016. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/10919/83218.

Council of Science Editors:

Hossain KSMT. Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings. [Doctoral Dissertation]. Virginia Tech; 2016. Available from: http://hdl.handle.net/10919/83218


University of Illinois – Urbana-Champaign

14. Kim, Jaebum. Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences.

Degree: PhD, 0112, 2010, University of Illinois – Urbana-Champaign

 Non-coding sequences, constituting a large fraction of genomic DNA, are of great importance because (i) they harbor functional elements that are involved in the regulation… (more)

Subjects/Keywords: Multiple sequence alignment; Probabilistic model; Insertions and deletions; Simulation-based benchmark; Regulatory sequences; Sequence evolution

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Kim, J. (2010). Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/16981

Chicago Manual of Style (16th Edition):

Kim, Jaebum. “Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed October 14, 2019. http://hdl.handle.net/2142/16981.

MLA Handbook (7th Edition):

Kim, Jaebum. “Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences.” 2010. Web. 14 Oct 2019.

Vancouver:

Kim J. Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/2142/16981.

Council of Science Editors:

Kim J. Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/16981


Montana Tech

15. Nord, Alex. Mirage: A Novel Multiple Protein Sequence Alignment Tool.

Degree: MS, 2017, Montana Tech

  A fundamental problem in computational biology is the organization of many related sequences into a multiple sequence alignment (MSA) [2]. MSAs have a range… (more)

Subjects/Keywords: multiple sequence alignment; computational biology; transitive sequence alignment; protein isoforms; alternative reading frames; Computer Sciences; Other Computer Sciences

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APA (6th Edition):

Nord, A. (2017). Mirage: A Novel Multiple Protein Sequence Alignment Tool. (Masters Thesis). Montana Tech. Retrieved from https://scholarworks.umt.edu/etd/11110

Chicago Manual of Style (16th Edition):

Nord, Alex. “Mirage: A Novel Multiple Protein Sequence Alignment Tool.” 2017. Masters Thesis, Montana Tech. Accessed October 14, 2019. https://scholarworks.umt.edu/etd/11110.

MLA Handbook (7th Edition):

Nord, Alex. “Mirage: A Novel Multiple Protein Sequence Alignment Tool.” 2017. Web. 14 Oct 2019.

Vancouver:

Nord A. Mirage: A Novel Multiple Protein Sequence Alignment Tool. [Internet] [Masters thesis]. Montana Tech; 2017. [cited 2019 Oct 14]. Available from: https://scholarworks.umt.edu/etd/11110.

Council of Science Editors:

Nord A. Mirage: A Novel Multiple Protein Sequence Alignment Tool. [Masters Thesis]. Montana Tech; 2017. Available from: https://scholarworks.umt.edu/etd/11110


Colorado State University

16. Shrestha, Akash. Read alignment using Deep Neural Networks.

Degree: MS(M.S.), Computer Science, 2019, Colorado State University

 Read alignment is the process of mapping short DNA sequences into the reference genome. With the advent of consecutively evolving "next generation" sequencing technologies, the… (more)

Subjects/Keywords: Minhash; Pattern Discovery; DNA; Sequence Alignment; Neural Network

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APA (6th Edition):

Shrestha, A. (2019). Read alignment using Deep Neural Networks. (Masters Thesis). Colorado State University. Retrieved from http://hdl.handle.net/10217/195341

Chicago Manual of Style (16th Edition):

Shrestha, Akash. “Read alignment using Deep Neural Networks.” 2019. Masters Thesis, Colorado State University. Accessed October 14, 2019. http://hdl.handle.net/10217/195341.

MLA Handbook (7th Edition):

Shrestha, Akash. “Read alignment using Deep Neural Networks.” 2019. Web. 14 Oct 2019.

Vancouver:

Shrestha A. Read alignment using Deep Neural Networks. [Internet] [Masters thesis]. Colorado State University; 2019. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/10217/195341.

Council of Science Editors:

Shrestha A. Read alignment using Deep Neural Networks. [Masters Thesis]. Colorado State University; 2019. Available from: http://hdl.handle.net/10217/195341


University of Illinois – Urbana-Champaign

17. Wu, Xiao-Long. Tiger: tiled iterative genome assembler and approximate multi-genome aligner.

Degree: PhD, 1200, 2013, University of Illinois – Urbana-Champaign

Sequence assembly and alignments are two important stepping stones for comparative genomics. With the fast adoption of the next-generation sequencing (NGS) technologies and the coming… (more)

Subjects/Keywords: De novo genome assembly; next-generation sequencing; third-generation sequencing; iterative genome assembler; read partitioning; Multiple sequence alignment; multiple genome alignment

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Wu, X. (2013). Tiger: tiled iterative genome assembler and approximate multi-genome aligner. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/45618

Chicago Manual of Style (16th Edition):

Wu, Xiao-Long. “Tiger: tiled iterative genome assembler and approximate multi-genome aligner.” 2013. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed October 14, 2019. http://hdl.handle.net/2142/45618.

MLA Handbook (7th Edition):

Wu, Xiao-Long. “Tiger: tiled iterative genome assembler and approximate multi-genome aligner.” 2013. Web. 14 Oct 2019.

Vancouver:

Wu X. Tiger: tiled iterative genome assembler and approximate multi-genome aligner. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2013. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/2142/45618.

Council of Science Editors:

Wu X. Tiger: tiled iterative genome assembler and approximate multi-genome aligner. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2013. Available from: http://hdl.handle.net/2142/45618


University of New South Wales

18. Naznin, Farhana. Evolutionary Algorithms for Multiple Sequence Alignments.

Degree: Engineering & Information Technology, 2011, University of New South Wales

Multiple sequence alignment (MSA) is a valuable technique for studying molecular evolution, analysing sequence structure, and drug design. To date, in the literature, many algorithms… (more)

Subjects/Keywords: Amino Acid Sequences; Deoxyribonucleic Acid; Ribonucleic Acid; Dynamic Algorithm / Programming; Pairwise Sequence Alignment; Guide Tree / Progressive Alignment Approach; Multiple Sequence Alignment; Iterative Approach; Genetic Algorithm

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Naznin, F. (2011). Evolutionary Algorithms for Multiple Sequence Alignments. (Doctoral Dissertation). University of New South Wales. Retrieved from http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true

Chicago Manual of Style (16th Edition):

Naznin, Farhana. “Evolutionary Algorithms for Multiple Sequence Alignments.” 2011. Doctoral Dissertation, University of New South Wales. Accessed October 14, 2019. http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true.

MLA Handbook (7th Edition):

Naznin, Farhana. “Evolutionary Algorithms for Multiple Sequence Alignments.” 2011. Web. 14 Oct 2019.

Vancouver:

Naznin F. Evolutionary Algorithms for Multiple Sequence Alignments. [Internet] [Doctoral dissertation]. University of New South Wales; 2011. [cited 2019 Oct 14]. Available from: http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true.

Council of Science Editors:

Naznin F. Evolutionary Algorithms for Multiple Sequence Alignments. [Doctoral Dissertation]. University of New South Wales; 2011. Available from: http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true


University of Western Ontario

19. Dickson, Russell J. Computational Molecular Coevolution.

Degree: 2013, University of Western Ontario

 A major goal in computational biochemistry is to obtain three-dimensional structure information from protein sequence. Coevolution represents a biological mechanism through which structural information can… (more)

Subjects/Keywords: Coevolution; multiple sequence alignment; protein structure prediction; local covariation; protein family curation; Mutual Information; Bioinformatics

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APA (6th Edition):

Dickson, R. J. (2013). Computational Molecular Coevolution. (Thesis). University of Western Ontario. Retrieved from https://ir.lib.uwo.ca/etd/1798

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Dickson, Russell J. “Computational Molecular Coevolution.” 2013. Thesis, University of Western Ontario. Accessed October 14, 2019. https://ir.lib.uwo.ca/etd/1798.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Dickson, Russell J. “Computational Molecular Coevolution.” 2013. Web. 14 Oct 2019.

Vancouver:

Dickson RJ. Computational Molecular Coevolution. [Internet] [Thesis]. University of Western Ontario; 2013. [cited 2019 Oct 14]. Available from: https://ir.lib.uwo.ca/etd/1798.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Dickson RJ. Computational Molecular Coevolution. [Thesis]. University of Western Ontario; 2013. Available from: https://ir.lib.uwo.ca/etd/1798

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

20. LI YIHUI. A sequential iterative refinement optimization method to multiple sequence alignment.

Degree: 2004, National University of Singapore

Subjects/Keywords: Multiple Sequence Alignment Iterative Algorithm Score

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APA (6th Edition):

YIHUI, L. (2004). A sequential iterative refinement optimization method to multiple sequence alignment. (Thesis). National University of Singapore. Retrieved from http://scholarbank.nus.edu.sg/handle/10635/13895

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

YIHUI, LI. “A sequential iterative refinement optimization method to multiple sequence alignment.” 2004. Thesis, National University of Singapore. Accessed October 14, 2019. http://scholarbank.nus.edu.sg/handle/10635/13895.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

YIHUI, LI. “A sequential iterative refinement optimization method to multiple sequence alignment.” 2004. Web. 14 Oct 2019.

Vancouver:

YIHUI L. A sequential iterative refinement optimization method to multiple sequence alignment. [Internet] [Thesis]. National University of Singapore; 2004. [cited 2019 Oct 14]. Available from: http://scholarbank.nus.edu.sg/handle/10635/13895.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

YIHUI L. A sequential iterative refinement optimization method to multiple sequence alignment. [Thesis]. National University of Singapore; 2004. Available from: http://scholarbank.nus.edu.sg/handle/10635/13895

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


San Jose State University

21. Rakhonde, Shubhangi. Multiple Sequence Alignment with Pro le Hidden Markov Models.

Degree: MS, Computer Science, 2016, San Jose State University

  The human genome consists of various patterns and sequences that are of biolog- ical signi cance. Capturing these patterns can help us in resolving… (more)

Subjects/Keywords: Multiple Sequence Alignment Profile Hidden Markov Model; Artificial Intelligence and Robotics; Other Computer Sciences

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APA (6th Edition):

Rakhonde, S. (2016). Multiple Sequence Alignment with Pro le Hidden Markov Models. (Masters Thesis). San Jose State University. Retrieved from https://doi.org/10.31979/etd.vub9-j9hc ; https://scholarworks.sjsu.edu/etd_projects/495

Chicago Manual of Style (16th Edition):

Rakhonde, Shubhangi. “Multiple Sequence Alignment with Pro le Hidden Markov Models.” 2016. Masters Thesis, San Jose State University. Accessed October 14, 2019. https://doi.org/10.31979/etd.vub9-j9hc ; https://scholarworks.sjsu.edu/etd_projects/495.

MLA Handbook (7th Edition):

Rakhonde, Shubhangi. “Multiple Sequence Alignment with Pro le Hidden Markov Models.” 2016. Web. 14 Oct 2019.

Vancouver:

Rakhonde S. Multiple Sequence Alignment with Pro le Hidden Markov Models. [Internet] [Masters thesis]. San Jose State University; 2016. [cited 2019 Oct 14]. Available from: https://doi.org/10.31979/etd.vub9-j9hc ; https://scholarworks.sjsu.edu/etd_projects/495.

Council of Science Editors:

Rakhonde S. Multiple Sequence Alignment with Pro le Hidden Markov Models. [Masters Thesis]. San Jose State University; 2016. Available from: https://doi.org/10.31979/etd.vub9-j9hc ; https://scholarworks.sjsu.edu/etd_projects/495


Rice University

22. Huh, Dongkuk. Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil.

Degree: MS, Natural Sciences, 2019, Rice University

 Soil microorganisms contribute to agricultural productivity by forming symbiosis with plant roots and affecting the solubility of soil nutrients. Microbiological activity in soil can be… (more)

Subjects/Keywords: Methyl halide transferase; Multiple sequence alignment; Protein fragment complementation assay; Gas bioreporter; Protein engineering

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APA (6th Edition):

Huh, D. (2019). Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil. (Masters Thesis). Rice University. Retrieved from http://hdl.handle.net/1911/107401

Chicago Manual of Style (16th Edition):

Huh, Dongkuk. “Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil.” 2019. Masters Thesis, Rice University. Accessed October 14, 2019. http://hdl.handle.net/1911/107401.

MLA Handbook (7th Edition):

Huh, Dongkuk. “Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil.” 2019. Web. 14 Oct 2019.

Vancouver:

Huh D. Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil. [Internet] [Masters thesis]. Rice University; 2019. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/1911/107401.

Council of Science Editors:

Huh D. Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil. [Masters Thesis]. Rice University; 2019. Available from: http://hdl.handle.net/1911/107401


Freie Universität Berlin

23. Rausch, Tobias. die Analyse, das Design und die Entwicklung von generischen Komponenten zum multiplen Sequenzvergleich in der Softwarebibliothek SeqAn.

Degree: 2010, Freie Universität Berlin

Multiple Sequenzvergleiche sind ein entscheidendes Hilfsmittel in der Bioinformatik. Zahlreiche Anwendungen, wie zum Beispiel Proteinstrukturvorhersagen, Phylogenie oder die Modellierung von Bindungsstellen beruhen auf der effizienten… (more)

Subjects/Keywords: alignment; multiple alignment; SeqAn; sequence analysis; 000 Informatik, Informationswissenschaft, allgemeine Werke::000 Informatik, Wissen, Systeme::004 Datenverarbeitung; Informatik

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APA (6th Edition):

Rausch, T. (2010). die Analyse, das Design und die Entwicklung von generischen Komponenten zum multiplen Sequenzvergleich in der Softwarebibliothek SeqAn. (Thesis). Freie Universität Berlin. Retrieved from http://dx.doi.org/10.17169/refubium-7460

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Rausch, Tobias. “die Analyse, das Design und die Entwicklung von generischen Komponenten zum multiplen Sequenzvergleich in der Softwarebibliothek SeqAn.” 2010. Thesis, Freie Universität Berlin. Accessed October 14, 2019. http://dx.doi.org/10.17169/refubium-7460.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Rausch, Tobias. “die Analyse, das Design und die Entwicklung von generischen Komponenten zum multiplen Sequenzvergleich in der Softwarebibliothek SeqAn.” 2010. Web. 14 Oct 2019.

Vancouver:

Rausch T. die Analyse, das Design und die Entwicklung von generischen Komponenten zum multiplen Sequenzvergleich in der Softwarebibliothek SeqAn. [Internet] [Thesis]. Freie Universität Berlin; 2010. [cited 2019 Oct 14]. Available from: http://dx.doi.org/10.17169/refubium-7460.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Rausch T. die Analyse, das Design und die Entwicklung von generischen Komponenten zum multiplen Sequenzvergleich in der Softwarebibliothek SeqAn. [Thesis]. Freie Universität Berlin; 2010. Available from: http://dx.doi.org/10.17169/refubium-7460

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Hong Kong

24. Xie, Fangping. Improving the quality of large scale multiple sequence alignment.

Degree: M. Phil., 2016, University of Hong Kong

 Biological sequences have rapidly accumulated due to the development of sequencing technologies. For evolutionary biology, a fundamental question is to reconstruct the phylogenetic relationship of… (more)

Subjects/Keywords: Sequence alignment (Bioinformatics)

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APA (6th Edition):

Xie, F. (2016). Improving the quality of large scale multiple sequence alignment. (Masters Thesis). University of Hong Kong. Retrieved from http://hdl.handle.net/10722/241433

Chicago Manual of Style (16th Edition):

Xie, Fangping. “Improving the quality of large scale multiple sequence alignment.” 2016. Masters Thesis, University of Hong Kong. Accessed October 14, 2019. http://hdl.handle.net/10722/241433.

MLA Handbook (7th Edition):

Xie, Fangping. “Improving the quality of large scale multiple sequence alignment.” 2016. Web. 14 Oct 2019.

Vancouver:

Xie F. Improving the quality of large scale multiple sequence alignment. [Internet] [Masters thesis]. University of Hong Kong; 2016. [cited 2019 Oct 14]. Available from: http://hdl.handle.net/10722/241433.

Council of Science Editors:

Xie F. Improving the quality of large scale multiple sequence alignment. [Masters Thesis]. University of Hong Kong; 2016. Available from: http://hdl.handle.net/10722/241433


University of Hong Kong

25. Ye, Yongtao. Aligning multiple sequences adaptively.

Degree: M. Phil., 2014, University of Hong Kong

With the rapid development of genome sequencing, an ever-increasing number of molecular biology analyses rely on the construction of an accurate multiple sequence alignment (MSA),… (more)

Subjects/Keywords: Sequence alignment (Bioinformatics)

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APA (6th Edition):

Ye, Y. (2014). Aligning multiple sequences adaptively. (Masters Thesis). University of Hong Kong. Retrieved from Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465

Chicago Manual of Style (16th Edition):

Ye, Yongtao. “Aligning multiple sequences adaptively.” 2014. Masters Thesis, University of Hong Kong. Accessed October 14, 2019. Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465.

MLA Handbook (7th Edition):

Ye, Yongtao. “Aligning multiple sequences adaptively.” 2014. Web. 14 Oct 2019.

Vancouver:

Ye Y. Aligning multiple sequences adaptively. [Internet] [Masters thesis]. University of Hong Kong; 2014. [cited 2019 Oct 14]. Available from: Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465.

Council of Science Editors:

Ye Y. Aligning multiple sequences adaptively. [Masters Thesis]. University of Hong Kong; 2014. Available from: Ye, Y. [叶永滔]. (2014). Aligning multiple sequences adaptively. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5317071 ; http://dx.doi.org/10.5353/th_b5317071 ; http://hdl.handle.net/10722/206465


Arizona State University

26. Ravichandran, Lakshminarayan. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.

Degree: PhD, Electrical Engineering, 2011, Arizona State University

 Genomic and proteomic sequences, which are in the form of deoxyribonucleic acid (DNA) and amino acids respectively, play a vital role in the structure, function… (more)

Subjects/Keywords: Engineering; Bioinformatics; Molecular Biology; chirp signal; classification; DNA sequence alignment; Gaussian signal; protein structure alignment; querying

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APA (6th Edition):

Ravichandran, L. (2011). Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. (Doctoral Dissertation). Arizona State University. Retrieved from http://repository.asu.edu/items/9483

Chicago Manual of Style (16th Edition):

Ravichandran, Lakshminarayan. “Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.” 2011. Doctoral Dissertation, Arizona State University. Accessed October 14, 2019. http://repository.asu.edu/items/9483.

MLA Handbook (7th Edition):

Ravichandran, Lakshminarayan. “Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures.” 2011. Web. 14 Oct 2019.

Vancouver:

Ravichandran L. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. [Internet] [Doctoral dissertation]. Arizona State University; 2011. [cited 2019 Oct 14]. Available from: http://repository.asu.edu/items/9483.

Council of Science Editors:

Ravichandran L. Waveform Mapping and Time-Frequency Processing of Biological Sequences and Structures. [Doctoral Dissertation]. Arizona State University; 2011. Available from: http://repository.asu.edu/items/9483

27. Laforet, Marcon. Using mutual information to reprogram DNA specificity of LAGLIDADG endonucleases.

Degree: 2016, University of Western Ontario

 A systematic approach to reprogram protein-DNA interactions has yet to be discovered. This study investigates the ability of co-variation analyses to identify potential protein-DNA contacts… (more)

Subjects/Keywords: co-variation; mutual information; protein-DNA interactions; specificity; multiple sequence alignment; prediction; LAGLIDADG; homing endonuclease; Biochemistry

…binding specificity. 9 CHAPTER TWO - MATERIALS AND METHODS 2.1 Multiple sequence alignment… …protein sequence information and determine which amino acids contribute DNA specificity would… …recognize a DNA sequence (Dreier et al., 2005), further complicating these interaction… …DNA segment includes a HE, disrupting the HE recognition sequence (Fig. 1). This… …varying with nts in their DNA target sequence. 1.4 Using mutual information to assess protein… 

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APA (6th Edition):

Laforet, M. (2016). Using mutual information to reprogram DNA specificity of LAGLIDADG endonucleases. (Thesis). University of Western Ontario. Retrieved from https://ir.lib.uwo.ca/etd/4191

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Laforet, Marcon. “Using mutual information to reprogram DNA specificity of LAGLIDADG endonucleases.” 2016. Thesis, University of Western Ontario. Accessed October 14, 2019. https://ir.lib.uwo.ca/etd/4191.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Laforet, Marcon. “Using mutual information to reprogram DNA specificity of LAGLIDADG endonucleases.” 2016. Web. 14 Oct 2019.

Vancouver:

Laforet M. Using mutual information to reprogram DNA specificity of LAGLIDADG endonucleases. [Internet] [Thesis]. University of Western Ontario; 2016. [cited 2019 Oct 14]. Available from: https://ir.lib.uwo.ca/etd/4191.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Laforet M. Using mutual information to reprogram DNA specificity of LAGLIDADG endonucleases. [Thesis]. University of Western Ontario; 2016. Available from: https://ir.lib.uwo.ca/etd/4191

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brigham Young University

28. Lund, William B. Ensemble Methods for Historical Machine-Printed Document Recognition.

Degree: PhD, 2014, Brigham Young University

  The usefulness of digitized documents is directly related to the quality of the extracted text. Optical Character Recognition (OCR) has reached a point where… (more)

Subjects/Keywords: historical document recognition; optical character recognition; OCR; OCR error correction; multiple sequence alignment; MSA; text alignment; progressive alignment; machine learning; Computer Sciences

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APA (6th Edition):

Lund, W. B. (2014). Ensemble Methods for Historical Machine-Printed Document Recognition. (Doctoral Dissertation). Brigham Young University. Retrieved from https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5023&context=etd

Chicago Manual of Style (16th Edition):

Lund, William B. “Ensemble Methods for Historical Machine-Printed Document Recognition.” 2014. Doctoral Dissertation, Brigham Young University. Accessed October 14, 2019. https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5023&context=etd.

MLA Handbook (7th Edition):

Lund, William B. “Ensemble Methods for Historical Machine-Printed Document Recognition.” 2014. Web. 14 Oct 2019.

Vancouver:

Lund WB. Ensemble Methods for Historical Machine-Printed Document Recognition. [Internet] [Doctoral dissertation]. Brigham Young University; 2014. [cited 2019 Oct 14]. Available from: https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5023&context=etd.

Council of Science Editors:

Lund WB. Ensemble Methods for Historical Machine-Printed Document Recognition. [Doctoral Dissertation]. Brigham Young University; 2014. Available from: https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5023&context=etd

29. Bureković, Adel. Evolucijski algoritem za poravnavo sekvenc.

Degree: 2018, Univerza v Mariboru

Poravnava bioloških sekvenc je računsko kompleksen problem, pri katerem skušamo z različnimi pristopi pridobiti čim bolj optimalno poravnavo. Namen magistrskega dela je bil predstaviti reševanje… (more)

Subjects/Keywords: evolucijski algoritem; poravnava sekvenc DNK; poravnava sekvenc proteinov; evolutionary algorithm; DNA sequence alignment; protein sequence alignment; info:eu-repo/classification/udc/004.021:575.82(043.2)

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APA (6th Edition):

Bureković, A. (2018). Evolucijski algoritem za poravnavo sekvenc. (Masters Thesis). Univerza v Mariboru. Retrieved from https://dk.um.si/IzpisGradiva.php?id=71460 ; https://dk.um.si/Dokument.php?id=127328&dn= ; https://plus.si.cobiss.net/opac7/bib/21805590?lang=sl

Chicago Manual of Style (16th Edition):

Bureković, Adel. “Evolucijski algoritem za poravnavo sekvenc.” 2018. Masters Thesis, Univerza v Mariboru. Accessed October 14, 2019. https://dk.um.si/IzpisGradiva.php?id=71460 ; https://dk.um.si/Dokument.php?id=127328&dn= ; https://plus.si.cobiss.net/opac7/bib/21805590?lang=sl.

MLA Handbook (7th Edition):

Bureković, Adel. “Evolucijski algoritem za poravnavo sekvenc.” 2018. Web. 14 Oct 2019.

Vancouver:

Bureković A. Evolucijski algoritem za poravnavo sekvenc. [Internet] [Masters thesis]. Univerza v Mariboru; 2018. [cited 2019 Oct 14]. Available from: https://dk.um.si/IzpisGradiva.php?id=71460 ; https://dk.um.si/Dokument.php?id=127328&dn= ; https://plus.si.cobiss.net/opac7/bib/21805590?lang=sl.

Council of Science Editors:

Bureković A. Evolucijski algoritem za poravnavo sekvenc. [Masters Thesis]. Univerza v Mariboru; 2018. Available from: https://dk.um.si/IzpisGradiva.php?id=71460 ; https://dk.um.si/Dokument.php?id=127328&dn= ; https://plus.si.cobiss.net/opac7/bib/21805590?lang=sl

30. Zafalon, Geraldo Francisco Donegá. Aplicação de estratégias híbridas em algoritmos de alinhamento múltiplo de sequências para ambientes de computação paralela e distribuída.

Degree: PhD, Sistemas Digitais, 2014, University of São Paulo

A Bioinformática tem se desenvolvido de forma intensa nos últimos anos. A necessidade de se processar os grandes conjuntos de sequências, sejam de nucleotídeos ou… (more)

Subjects/Keywords: Algoritmos de otimização; Alinhamento múltiplo de sequências; Bioinformática; Bioinformatics; Multiple sequence alignment; Optimization algorithms; Parallel processing; Processamento paralelo

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zafalon, G. F. D. (2014). Aplicação de estratégias híbridas em algoritmos de alinhamento múltiplo de sequências para ambientes de computação paralela e distribuída. (Doctoral Dissertation). University of São Paulo. Retrieved from http://www.teses.usp.br/teses/disponiveis/3/3141/tde-28082015-120515/ ;

Chicago Manual of Style (16th Edition):

Zafalon, Geraldo Francisco Donegá. “Aplicação de estratégias híbridas em algoritmos de alinhamento múltiplo de sequências para ambientes de computação paralela e distribuída.” 2014. Doctoral Dissertation, University of São Paulo. Accessed October 14, 2019. http://www.teses.usp.br/teses/disponiveis/3/3141/tde-28082015-120515/ ;.

MLA Handbook (7th Edition):

Zafalon, Geraldo Francisco Donegá. “Aplicação de estratégias híbridas em algoritmos de alinhamento múltiplo de sequências para ambientes de computação paralela e distribuída.” 2014. Web. 14 Oct 2019.

Vancouver:

Zafalon GFD. Aplicação de estratégias híbridas em algoritmos de alinhamento múltiplo de sequências para ambientes de computação paralela e distribuída. [Internet] [Doctoral dissertation]. University of São Paulo; 2014. [cited 2019 Oct 14]. Available from: http://www.teses.usp.br/teses/disponiveis/3/3141/tde-28082015-120515/ ;.

Council of Science Editors:

Zafalon GFD. Aplicação de estratégias híbridas em algoritmos de alinhamento múltiplo de sequências para ambientes de computação paralela e distribuída. [Doctoral Dissertation]. University of São Paulo; 2014. Available from: http://www.teses.usp.br/teses/disponiveis/3/3141/tde-28082015-120515/ ;

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