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You searched for subject:(Molecular Dynamics). Showing records 1 – 10 of 10 total matches.

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1. Zuckerman, Daniel M. Statistical Biophysics Blog: A hello: The point of this blog.

Degree: 2015, Oregon Health Sciences University

Subjects/Keywords: molecular dynamics simulation; statistical mechanics; biophysics; Other Biochemistry, Biophysics, and Structural Biology; Physical Chemistry; Statistical, Nonlinear, and Soft Matter Physics

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2015). Statistical Biophysics Blog: A hello: The point of this blog. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4PG1R8X ; http://digitalcommons.ohsu.edu/etd/3937

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: A hello: The point of this blog.” 2015. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4PG1R8X ; http://digitalcommons.ohsu.edu/etd/3937.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: A hello: The point of this blog.” 2015. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: A hello: The point of this blog. [Internet] [Thesis]. Oregon Health Sciences University; 2015. [cited 2020 Jul 08]. Available from: doi:10.6083/M4PG1R8X ; http://digitalcommons.ohsu.edu/etd/3937.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: A hello: The point of this blog. [Thesis]. Oregon Health Sciences University; 2015. Available from: doi:10.6083/M4PG1R8X ; http://digitalcommons.ohsu.edu/etd/3937

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

2. Zuckerman, Daniel M. Statistical Biophysics Blog: “Proof” of the Hill Relation Between Probability Flux and Mean First-Passage Time.

Degree: 2015, Oregon Health Sciences University

Subjects/Keywords: molecular dynamics; trajectories; first passage time; Biochemistry, Biophysics, and Structural Biology; Biological and Chemical Physics; Statistical, Nonlinear, and Soft Matter Physics

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2015). Statistical Biophysics Blog: “Proof” of the Hill Relation Between Probability Flux and Mean First-Passage Time. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4Q81CKN ; http://digitalcommons.ohsu.edu/etd/3944

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: “Proof” of the Hill Relation Between Probability Flux and Mean First-Passage Time.” 2015. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4Q81CKN ; http://digitalcommons.ohsu.edu/etd/3944.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: “Proof” of the Hill Relation Between Probability Flux and Mean First-Passage Time.” 2015. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: “Proof” of the Hill Relation Between Probability Flux and Mean First-Passage Time. [Internet] [Thesis]. Oregon Health Sciences University; 2015. [cited 2020 Jul 08]. Available from: doi:10.6083/M4Q81CKN ; http://digitalcommons.ohsu.edu/etd/3944.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: “Proof” of the Hill Relation Between Probability Flux and Mean First-Passage Time. [Thesis]. Oregon Health Sciences University; 2015. Available from: doi:10.6083/M4Q81CKN ; http://digitalcommons.ohsu.edu/etd/3944

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

3. Zuckerman, Daniel M. Statistical Biophysics Blog: Everything is Markovian; nothing is Markovian.

Degree: 2015, Oregon Health Sciences University

Subjects/Keywords: molecular dynamics simulation; Markov model; non-Markovian behavior; Biological and Chemical Physics; Biophysics; Physical Chemistry; Statistical, Nonlinear, and Soft Matter Physics

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2015). Statistical Biophysics Blog: Everything is Markovian; nothing is Markovian. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4736QFT ; http://digitalcommons.ohsu.edu/etd/3957

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: Everything is Markovian; nothing is Markovian.” 2015. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4736QFT ; http://digitalcommons.ohsu.edu/etd/3957.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: Everything is Markovian; nothing is Markovian.” 2015. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: Everything is Markovian; nothing is Markovian. [Internet] [Thesis]. Oregon Health Sciences University; 2015. [cited 2020 Jul 08]. Available from: doi:10.6083/M4736QFT ; http://digitalcommons.ohsu.edu/etd/3957.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: Everything is Markovian; nothing is Markovian. [Thesis]. Oregon Health Sciences University; 2015. Available from: doi:10.6083/M4736QFT ; http://digitalcommons.ohsu.edu/etd/3957

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

4. Zuckerman, Daniel M. Statistical Biophysics Blog: What I have against (most) PMF Calculations.

Degree: 2017, Oregon Health Sciences University

Subjects/Keywords: free energy; molecular dynamics simulation; biomolecules; statistical mechanics; mechanism; kinetics; Biochemistry, Biophysics, and Structural Biology; Biological and Chemical Physics; Physical Chemistry; Statistical, Nonlinear, and Soft Matter Physics

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2017). Statistical Biophysics Blog: What I have against (most) PMF Calculations. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4G44PT3 ; https://digitalcommons.ohsu.edu/etd/3976

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: What I have against (most) PMF Calculations.” 2017. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4G44PT3 ; https://digitalcommons.ohsu.edu/etd/3976.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: What I have against (most) PMF Calculations.” 2017. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: What I have against (most) PMF Calculations. [Internet] [Thesis]. Oregon Health Sciences University; 2017. [cited 2020 Jul 08]. Available from: doi:10.6083/M4G44PT3 ; https://digitalcommons.ohsu.edu/etd/3976.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: What I have against (most) PMF Calculations. [Thesis]. Oregon Health Sciences University; 2017. Available from: doi:10.6083/M4G44PT3 ; https://digitalcommons.ohsu.edu/etd/3976

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

5. Zuckerman, Daniel M. Statistical Biophysics Blog: FAQ on Trajectory Ensembles.

Degree: 2015, Oregon Health Sciences University

Subjects/Keywords: molecular dynamics simulation; statistical mechanics; trajectories; trajectory ensemble; equilibrium; rate constant; Biological and Chemical Physics; Biophysics; Physical Chemistry; Statistical, Nonlinear, and Soft Matter Physics; Structural Biology

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2015). Statistical Biophysics Blog: FAQ on Trajectory Ensembles. (Thesis). Oregon Health Sciences University. Retrieved from http://digitalcommons.ohsu.edu/etd/3965

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: FAQ on Trajectory Ensembles.” 2015. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. http://digitalcommons.ohsu.edu/etd/3965.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: FAQ on Trajectory Ensembles.” 2015. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: FAQ on Trajectory Ensembles. [Internet] [Thesis]. Oregon Health Sciences University; 2015. [cited 2020 Jul 08]. Available from: http://digitalcommons.ohsu.edu/etd/3965.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: FAQ on Trajectory Ensembles. [Thesis]. Oregon Health Sciences University; 2015. Available from: http://digitalcommons.ohsu.edu/etd/3965

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

6. Zuckerman, Daniel M. Overview of Weighted Ensemble Simulation: Path-sampling, Steady States, Equilibrium.

Degree: 2017, Oregon Health Sciences University

Subjects/Keywords: Weighted ensemble; molecular dynamics; trajectories; rates; pathways; steady state; Biochemistry, Biophysics, and Structural Biology; Biological and Chemical Physics; Physical Chemistry; Statistical, Nonlinear, and Soft Matter Physics

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2017). Overview of Weighted Ensemble Simulation: Path-sampling, Steady States, Equilibrium. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M428074W ; http://digitalcommons.ohsu.edu/etd/3968

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Overview of Weighted Ensemble Simulation: Path-sampling, Steady States, Equilibrium.” 2017. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M428074W ; http://digitalcommons.ohsu.edu/etd/3968.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Overview of Weighted Ensemble Simulation: Path-sampling, Steady States, Equilibrium.” 2017. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Overview of Weighted Ensemble Simulation: Path-sampling, Steady States, Equilibrium. [Internet] [Thesis]. Oregon Health Sciences University; 2017. [cited 2020 Jul 08]. Available from: doi:10.6083/M428074W ; http://digitalcommons.ohsu.edu/etd/3968.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Overview of Weighted Ensemble Simulation: Path-sampling, Steady States, Equilibrium. [Thesis]. Oregon Health Sciences University; 2017. Available from: doi:10.6083/M428074W ; http://digitalcommons.ohsu.edu/etd/3968

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

7. Zuckerman, Daniel M. Statistical Biophysics Blog: Recovering from bootstrap intoxication.

Degree: 2018, Oregon Health Sciences University

Subjects/Keywords: statistical uncertainty; error bars; molecular dynamics simulation; biomolecules; weighted ensemble; variance; Biochemistry, Biophysics, and Structural Biology; Biological and Chemical Physics; Statistics and Probability

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2018). Statistical Biophysics Blog: Recovering from bootstrap intoxication. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/2WI5UV ; https://digitalcommons.ohsu.edu/etd/4073

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: Recovering from bootstrap intoxication.” 2018. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/2WI5UV ; https://digitalcommons.ohsu.edu/etd/4073.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: Recovering from bootstrap intoxication.” 2018. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: Recovering from bootstrap intoxication. [Internet] [Thesis]. Oregon Health Sciences University; 2018. [cited 2020 Jul 08]. Available from: doi:10.6083/2WI5UV ; https://digitalcommons.ohsu.edu/etd/4073.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: Recovering from bootstrap intoxication. [Thesis]. Oregon Health Sciences University; 2018. Available from: doi:10.6083/2WI5UV ; https://digitalcommons.ohsu.edu/etd/4073

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

8. Zuckerman, Daniel M. Statistical Biophysics Blog: So you want to do some path sampling ….

Degree: 2016, Oregon Health Sciences University

Subjects/Keywords: molecular dynamics simulation; statistical mechanics; path sampling; trajectory ensemble; rate constant; first passage time; Biochemistry, Biophysics, and Structural Biology; Biological and Chemical Physics; Statistical, Nonlinear, and Soft Matter Physics

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2016). Statistical Biophysics Blog: So you want to do some path sampling …. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4BP02B4 ; http://digitalcommons.ohsu.edu/etd/3966

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: So you want to do some path sampling ….” 2016. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4BP02B4 ; http://digitalcommons.ohsu.edu/etd/3966.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: So you want to do some path sampling ….” 2016. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: So you want to do some path sampling …. [Internet] [Thesis]. Oregon Health Sciences University; 2016. [cited 2020 Jul 08]. Available from: doi:10.6083/M4BP02B4 ; http://digitalcommons.ohsu.edu/etd/3966.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: So you want to do some path sampling …. [Thesis]. Oregon Health Sciences University; 2016. Available from: doi:10.6083/M4BP02B4 ; http://digitalcommons.ohsu.edu/etd/3966

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

9. Zuckerman, Daniel M. Statistical Biophysics Blog: Let’s stop being sloppy about uncertainty.

Degree: 2017, Oregon Health Sciences University

Subjects/Keywords: statistical uncertainty; error bars; molecular dynamics simulation; biomolecules; statistical mechanics; trajectories; Biochemistry, Biophysics, and Structural Biology; Biological and Chemical Physics; Statistical, Nonlinear, and Soft Matter Physics; Statistics and Probability

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2017). Statistical Biophysics Blog: Let’s stop being sloppy about uncertainty. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4F18Z8D ; https://digitalcommons.ohsu.edu/etd/3987

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: Let’s stop being sloppy about uncertainty.” 2017. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4F18Z8D ; https://digitalcommons.ohsu.edu/etd/3987.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: Let’s stop being sloppy about uncertainty.” 2017. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: Let’s stop being sloppy about uncertainty. [Internet] [Thesis]. Oregon Health Sciences University; 2017. [cited 2020 Jul 08]. Available from: doi:10.6083/M4F18Z8D ; https://digitalcommons.ohsu.edu/etd/3987.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: Let’s stop being sloppy about uncertainty. [Thesis]. Oregon Health Sciences University; 2017. Available from: doi:10.6083/M4F18Z8D ; https://digitalcommons.ohsu.edu/etd/3987

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

10. Zuckerman, Daniel M. Statistical Biophysics Blog: More is better: The trajectory ensemble picture.

Degree: 2015, Oregon Health Sciences University

Subjects/Keywords: molecular dynamics simulation; statistical mechanics; trajectories; trajectory ensemble; equilibrium; rate constant; Hill relation; Biological and Chemical Physics; Other Biochemistry, Biophysics, and Structural Biology; Statistical, Nonlinear, and Soft Matter Physics

Record DetailsSimilar RecordsGoogle PlusoneFacebookTwitterCiteULikeMendeleyreddit

APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zuckerman, D. M. (2015). Statistical Biophysics Blog: More is better: The trajectory ensemble picture. (Thesis). Oregon Health Sciences University. Retrieved from doi:10.6083/M4HD7V5V ; http://digitalcommons.ohsu.edu/etd/3964

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: More is better: The trajectory ensemble picture.” 2015. Thesis, Oregon Health Sciences University. Accessed July 08, 2020. doi:10.6083/M4HD7V5V ; http://digitalcommons.ohsu.edu/etd/3964.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zuckerman, Daniel M. “Statistical Biophysics Blog: More is better: The trajectory ensemble picture.” 2015. Web. 08 Jul 2020.

Vancouver:

Zuckerman DM. Statistical Biophysics Blog: More is better: The trajectory ensemble picture. [Internet] [Thesis]. Oregon Health Sciences University; 2015. [cited 2020 Jul 08]. Available from: doi:10.6083/M4HD7V5V ; http://digitalcommons.ohsu.edu/etd/3964.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zuckerman DM. Statistical Biophysics Blog: More is better: The trajectory ensemble picture. [Thesis]. Oregon Health Sciences University; 2015. Available from: doi:10.6083/M4HD7V5V ; http://digitalcommons.ohsu.edu/etd/3964

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

.