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Dept: Biomedical Engineering

You searched for subject:(Molecular Dynamics). Showing records 1 – 12 of 12 total matches.

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Florida International University

1. Parikh, Jaimit B. Theoretical Investigation of Intra- and Inter-cellular Spatiotemporal Calcium Patterns in Microcirculation.

Degree: PhD, Biomedical Engineering, 2015, Florida International University

  Microcirculatory vessels are lined by endothelial cells (ECs) which are surrounded by a single or multiple layer of smooth muscle cells (SMCs). Spontaneous and… (more)

Subjects/Keywords: Microcirculation; Calcium Signaling; Mathematical Modeling; Smooth Muscle Cell; Endothelial Cell; TRPV4; Nitric Oxide; Calcium Waves; Vasomotion; Biochemical and Biomolecular Engineering; Biomechanics and Biotransport; Biomedical Engineering and Bioengineering; Biophysics; Cell Biology; Cellular and Molecular Physiology; Molecular, Cellular, and Tissue Engineering; Non-linear Dynamics; Ordinary Differential Equations and Applied Dynamics; Partial Differential Equations; Systems Biology; Transport Phenomena

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APA (6th Edition):

Parikh, J. B. (2015). Theoretical Investigation of Intra- and Inter-cellular Spatiotemporal Calcium Patterns in Microcirculation. (Doctoral Dissertation). Florida International University. Retrieved from https://digitalcommons.fiu.edu/etd/1927 ; 10.25148/etd.FI15032102 ; FI15032102

Chicago Manual of Style (16th Edition):

Parikh, Jaimit B. “Theoretical Investigation of Intra- and Inter-cellular Spatiotemporal Calcium Patterns in Microcirculation.” 2015. Doctoral Dissertation, Florida International University. Accessed August 08, 2020. https://digitalcommons.fiu.edu/etd/1927 ; 10.25148/etd.FI15032102 ; FI15032102.

MLA Handbook (7th Edition):

Parikh, Jaimit B. “Theoretical Investigation of Intra- and Inter-cellular Spatiotemporal Calcium Patterns in Microcirculation.” 2015. Web. 08 Aug 2020.

Vancouver:

Parikh JB. Theoretical Investigation of Intra- and Inter-cellular Spatiotemporal Calcium Patterns in Microcirculation. [Internet] [Doctoral dissertation]. Florida International University; 2015. [cited 2020 Aug 08]. Available from: https://digitalcommons.fiu.edu/etd/1927 ; 10.25148/etd.FI15032102 ; FI15032102.

Council of Science Editors:

Parikh JB. Theoretical Investigation of Intra- and Inter-cellular Spatiotemporal Calcium Patterns in Microcirculation. [Doctoral Dissertation]. Florida International University; 2015. Available from: https://digitalcommons.fiu.edu/etd/1927 ; 10.25148/etd.FI15032102 ; FI15032102


Rutgers University

2. Schmidt, Kassandra L., 1992-. Computational studies of peptide self-assembly.

Degree: MS, Biomedical Engineering, 2019, Rutgers University

 Research into novel biological materials for use in biomedical applications is guided by the formation of supramolecular structures which have properties resultant from the characteristics… (more)

Subjects/Keywords: Molecular Dynamics; Peptides  – Synthesis

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APA (6th Edition):

Schmidt, Kassandra L., 1. (2019). Computational studies of peptide self-assembly. (Masters Thesis). Rutgers University. Retrieved from https://rucore.libraries.rutgers.edu/rutgers-lib/61944/

Chicago Manual of Style (16th Edition):

Schmidt, Kassandra L., 1992-. “Computational studies of peptide self-assembly.” 2019. Masters Thesis, Rutgers University. Accessed August 08, 2020. https://rucore.libraries.rutgers.edu/rutgers-lib/61944/.

MLA Handbook (7th Edition):

Schmidt, Kassandra L., 1992-. “Computational studies of peptide self-assembly.” 2019. Web. 08 Aug 2020.

Vancouver:

Schmidt, Kassandra L. 1. Computational studies of peptide self-assembly. [Internet] [Masters thesis]. Rutgers University; 2019. [cited 2020 Aug 08]. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/61944/.

Council of Science Editors:

Schmidt, Kassandra L. 1. Computational studies of peptide self-assembly. [Masters Thesis]. Rutgers University; 2019. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/61944/


Texas A&M University

3. Teng, Xiaojing. Mechanical Analysis of Collagen and DNA.

Degree: PhD, Biomedical Engineering, 2016, Texas A&M University

 It is known that mechanics plays a central role in many biological events. Tissue can remodel and turnover to adapt to new mechanical environment, such… (more)

Subjects/Keywords: Molecular Dynamics; Fibril Collagen; DNA; Mechanical Property; Stiffness

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APA (6th Edition):

Teng, X. (2016). Mechanical Analysis of Collagen and DNA. (Doctoral Dissertation). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/174290

Chicago Manual of Style (16th Edition):

Teng, Xiaojing. “Mechanical Analysis of Collagen and DNA.” 2016. Doctoral Dissertation, Texas A&M University. Accessed August 08, 2020. http://hdl.handle.net/1969.1/174290.

MLA Handbook (7th Edition):

Teng, Xiaojing. “Mechanical Analysis of Collagen and DNA.” 2016. Web. 08 Aug 2020.

Vancouver:

Teng X. Mechanical Analysis of Collagen and DNA. [Internet] [Doctoral dissertation]. Texas A&M University; 2016. [cited 2020 Aug 08]. Available from: http://hdl.handle.net/1969.1/174290.

Council of Science Editors:

Teng X. Mechanical Analysis of Collagen and DNA. [Doctoral Dissertation]. Texas A&M University; 2016. Available from: http://hdl.handle.net/1969.1/174290


University of Minnesota

4. Braun, Anthony Robert. Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling.

Degree: PhD, Biomedical Engineering, 2014, University of Minnesota

 Alpha-Synuclein (aSyn) is a 140 amino acid, intrinsically disordered protein that adopts an extended amphipathic alpha-helical structure upon binding the membrane. aSyn is the major… (more)

Subjects/Keywords: Alpha synuclein; Bending rigidity; Molecular dynamics; Biomedical engineering

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APA (6th Edition):

Braun, A. R. (2014). Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling. (Doctoral Dissertation). University of Minnesota. Retrieved from http://hdl.handle.net/11299/166598

Chicago Manual of Style (16th Edition):

Braun, Anthony Robert. “Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling.” 2014. Doctoral Dissertation, University of Minnesota. Accessed August 08, 2020. http://hdl.handle.net/11299/166598.

MLA Handbook (7th Edition):

Braun, Anthony Robert. “Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling.” 2014. Web. 08 Aug 2020.

Vancouver:

Braun AR. Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling. [Internet] [Doctoral dissertation]. University of Minnesota; 2014. [cited 2020 Aug 08]. Available from: http://hdl.handle.net/11299/166598.

Council of Science Editors:

Braun AR. Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling. [Doctoral Dissertation]. University of Minnesota; 2014. Available from: http://hdl.handle.net/11299/166598


University of Minnesota

5. Chan, Clarence Elvin. Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission.

Degree: PhD, Biomedical Engineering, 2008, University of Minnesota

 As the major structural element of the cell, the cytoskeleton plays a vital role in response and transmission of forces in both extracellular and intracellular… (more)

Subjects/Keywords: Cellular adhesion dynamics; Focal adhesions; Integrins; Kinetochores; Molecular clutch; Biomedical Engineering

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APA (6th Edition):

Chan, C. E. (2008). Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission. (Doctoral Dissertation). University of Minnesota. Retrieved from http://purl.umn.edu/58039

Chicago Manual of Style (16th Edition):

Chan, Clarence Elvin. “Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission.” 2008. Doctoral Dissertation, University of Minnesota. Accessed August 08, 2020. http://purl.umn.edu/58039.

MLA Handbook (7th Edition):

Chan, Clarence Elvin. “Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission.” 2008. Web. 08 Aug 2020.

Vancouver:

Chan CE. Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission. [Internet] [Doctoral dissertation]. University of Minnesota; 2008. [cited 2020 Aug 08]. Available from: http://purl.umn.edu/58039.

Council of Science Editors:

Chan CE. Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission. [Doctoral Dissertation]. University of Minnesota; 2008. Available from: http://purl.umn.edu/58039


University of Minnesota

6. Perlmutter, Jason David. Molecular dynamics simulations of membranes and membrane proteins.

Degree: Biomedical Engineering, 2011, University of Minnesota

 Membranes composed of a lipid bilayer and embedded proteins are ubiquitous in nature. They form the barrier which demarcates every cell from its environment and… (more)

Subjects/Keywords: Amphipols; Coarse-Grained; Lipid Bilayers; Membrane Proteins; Molecular Dynamics; Biomedical Engineering

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APA (6th Edition):

Perlmutter, J. D. (2011). Molecular dynamics simulations of membranes and membrane proteins. (Thesis). University of Minnesota. Retrieved from http://purl.umn.edu/113510

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Perlmutter, Jason David. “Molecular dynamics simulations of membranes and membrane proteins.” 2011. Thesis, University of Minnesota. Accessed August 08, 2020. http://purl.umn.edu/113510.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Perlmutter, Jason David. “Molecular dynamics simulations of membranes and membrane proteins.” 2011. Web. 08 Aug 2020.

Vancouver:

Perlmutter JD. Molecular dynamics simulations of membranes and membrane proteins. [Internet] [Thesis]. University of Minnesota; 2011. [cited 2020 Aug 08]. Available from: http://purl.umn.edu/113510.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Perlmutter JD. Molecular dynamics simulations of membranes and membrane proteins. [Thesis]. University of Minnesota; 2011. Available from: http://purl.umn.edu/113510

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Minnesota

7. Brummel, Benjamin. The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy.

Degree: PhD, Biomedical Engineering, 2018, University of Minnesota

 The protein α-synuclein (αSyn), primarily recognized for its link to neurodegenerative disorders, has multiple reported functions. One well-established role of αSyn is its ability to… (more)

Subjects/Keywords: Atomic Force Microscopy; Lipids; Membrane Proteins; Molecular Dynamics; Synuclein

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APA (6th Edition):

Brummel, B. (2018). The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy. (Doctoral Dissertation). University of Minnesota. Retrieved from http://hdl.handle.net/11299/201069

Chicago Manual of Style (16th Edition):

Brummel, Benjamin. “The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy.” 2018. Doctoral Dissertation, University of Minnesota. Accessed August 08, 2020. http://hdl.handle.net/11299/201069.

MLA Handbook (7th Edition):

Brummel, Benjamin. “The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy.” 2018. Web. 08 Aug 2020.

Vancouver:

Brummel B. The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy. [Internet] [Doctoral dissertation]. University of Minnesota; 2018. [cited 2020 Aug 08]. Available from: http://hdl.handle.net/11299/201069.

Council of Science Editors:

Brummel B. The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy. [Doctoral Dissertation]. University of Minnesota; 2018. Available from: http://hdl.handle.net/11299/201069

8. Xia, Zhen, active 2013. Modeling the structure, dynamics, and interactions of biological molecules.

Degree: PhD, Biomedical Engineering, 2013, University of Texas – Austin

 Biological molecules are essential parts of organisms and participate in a variety of biological processes within cells. Understanding the relationship between sequence, structure, and function… (more)

Subjects/Keywords: Structural modeling; Molecular dynamics; Protein; RNA; Coarse-grained model; Atomistic model; RNA silencing; Influenza; Polarizable force field

…76 5 Molecular Dynamics Simulations of Ago Silencing Complexes .......................83… …83 5.2 Methods for Molecular Dynamics Simulations ......................................85… …of ala-2, ala-3, and ala-4 residues in replica exchange molecular dynamics simulation of… …heteroduplex for the wild-type during the 100-ns molecular dynamics simulation. The conformational… …molecular dynamics simulations to reveal the biological processes, which occur on the time and… 

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APA (6th Edition):

Xia, Zhen, a. 2. (2013). Modeling the structure, dynamics, and interactions of biological molecules. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/21875

Chicago Manual of Style (16th Edition):

Xia, Zhen, active 2013. “Modeling the structure, dynamics, and interactions of biological molecules.” 2013. Doctoral Dissertation, University of Texas – Austin. Accessed August 08, 2020. http://hdl.handle.net/2152/21875.

MLA Handbook (7th Edition):

Xia, Zhen, active 2013. “Modeling the structure, dynamics, and interactions of biological molecules.” 2013. Web. 08 Aug 2020.

Vancouver:

Xia, Zhen a2. Modeling the structure, dynamics, and interactions of biological molecules. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2013. [cited 2020 Aug 08]. Available from: http://hdl.handle.net/2152/21875.

Council of Science Editors:

Xia, Zhen a2. Modeling the structure, dynamics, and interactions of biological molecules. [Doctoral Dissertation]. University of Texas – Austin; 2013. Available from: http://hdl.handle.net/2152/21875


University of Texas – Austin

9. Zhang, Jiajing. Insight into biomolecular structure, interaction and energetics from modeling and simulation.

Degree: PhD, Biomedical Engineering, 2011, University of Texas – Austin

 A central goal of computational biophysics and biochemistry is to understand the behavior, interactions, and reactions of molecules, and to interpret and facilitate experimental design.… (more)

Subjects/Keywords: Molecular modeling; Molecular dynamics simulation; Protein-ligand binding free energy calculation

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APA (6th Edition):

Zhang, J. (2011). Insight into biomolecular structure, interaction and energetics from modeling and simulation. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/20672

Chicago Manual of Style (16th Edition):

Zhang, Jiajing. “Insight into biomolecular structure, interaction and energetics from modeling and simulation.” 2011. Doctoral Dissertation, University of Texas – Austin. Accessed August 08, 2020. http://hdl.handle.net/2152/20672.

MLA Handbook (7th Edition):

Zhang, Jiajing. “Insight into biomolecular structure, interaction and energetics from modeling and simulation.” 2011. Web. 08 Aug 2020.

Vancouver:

Zhang J. Insight into biomolecular structure, interaction and energetics from modeling and simulation. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2011. [cited 2020 Aug 08]. Available from: http://hdl.handle.net/2152/20672.

Council of Science Editors:

Zhang J. Insight into biomolecular structure, interaction and energetics from modeling and simulation. [Doctoral Dissertation]. University of Texas – Austin; 2011. Available from: http://hdl.handle.net/2152/20672


Washington University in St. Louis

10. Wong, Diana. The Interaction of Cofilin with the Actin Filament.

Degree: PhD, Biomedical Engineering, 2011, Washington University in St. Louis

 The regulation of filamentous actin: F-actin) production from the polymerization of globular actin: G-actin) within the cell is critical for many cell functions. Since actin… (more)

Subjects/Keywords: Biophysics; Bioinformatics; Biomedical Engineering; cofilin; computational structural biology; docking models; F-actin; filament dynamics; molecular dynamics simulations

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APA (6th Edition):

Wong, D. (2011). The Interaction of Cofilin with the Actin Filament. (Doctoral Dissertation). Washington University in St. Louis. Retrieved from https://openscholarship.wustl.edu/etd/902

Chicago Manual of Style (16th Edition):

Wong, Diana. “The Interaction of Cofilin with the Actin Filament.” 2011. Doctoral Dissertation, Washington University in St. Louis. Accessed August 08, 2020. https://openscholarship.wustl.edu/etd/902.

MLA Handbook (7th Edition):

Wong, Diana. “The Interaction of Cofilin with the Actin Filament.” 2011. Web. 08 Aug 2020.

Vancouver:

Wong D. The Interaction of Cofilin with the Actin Filament. [Internet] [Doctoral dissertation]. Washington University in St. Louis; 2011. [cited 2020 Aug 08]. Available from: https://openscholarship.wustl.edu/etd/902.

Council of Science Editors:

Wong D. The Interaction of Cofilin with the Actin Filament. [Doctoral Dissertation]. Washington University in St. Louis; 2011. Available from: https://openscholarship.wustl.edu/etd/902


Washington University in St. Louis

11. Saxena, Akansha. Structural and Functional Studies on BK(Ca) Channels.

Degree: PhD, Biomedical Engineering, 2010, Washington University in St. Louis

 The long term goal of this research is to study the structure and function of the BKCa channels, by focusing on the effect of a… (more)

Subjects/Keywords: Biomedical Engineering; Biophysics; Computational Biophysics, Homology Modeling, Molecular Dynamics, Molecular Modeling

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APA (6th Edition):

Saxena, A. (2010). Structural and Functional Studies on BK(Ca) Channels. (Doctoral Dissertation). Washington University in St. Louis. Retrieved from https://openscholarship.wustl.edu/etd/311

Chicago Manual of Style (16th Edition):

Saxena, Akansha. “Structural and Functional Studies on BK(Ca) Channels.” 2010. Doctoral Dissertation, Washington University in St. Louis. Accessed August 08, 2020. https://openscholarship.wustl.edu/etd/311.

MLA Handbook (7th Edition):

Saxena, Akansha. “Structural and Functional Studies on BK(Ca) Channels.” 2010. Web. 08 Aug 2020.

Vancouver:

Saxena A. Structural and Functional Studies on BK(Ca) Channels. [Internet] [Doctoral dissertation]. Washington University in St. Louis; 2010. [cited 2020 Aug 08]. Available from: https://openscholarship.wustl.edu/etd/311.

Council of Science Editors:

Saxena A. Structural and Functional Studies on BK(Ca) Channels. [Doctoral Dissertation]. Washington University in St. Louis; 2010. Available from: https://openscholarship.wustl.edu/etd/311


Washington University in St. Louis

12. Xu, Jiajing. KCNQ1/KCNE1 Interaction in the Cardiac IKs Channel and its Physiological Consequences.

Degree: PhD, Biomedical Engineering, 2018, Washington University in St. Louis

  Dynamic conformational changes of ion channel proteins during activation gating determine their function as carriers of current. The relationship between these molecular movements and… (more)

Subjects/Keywords: Cardiac action potential; Ion channels; Molecular simulation; Protein dynamics; Protein structure-function; Biomedical Engineering and Bioengineering; Chemistry; Molecular Biology; Other Chemistry

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APA (6th Edition):

Xu, J. (2018). KCNQ1/KCNE1 Interaction in the Cardiac IKs Channel and its Physiological Consequences. (Doctoral Dissertation). Washington University in St. Louis. Retrieved from https://openscholarship.wustl.edu/eng_etds/388

Chicago Manual of Style (16th Edition):

Xu, Jiajing. “KCNQ1/KCNE1 Interaction in the Cardiac IKs Channel and its Physiological Consequences.” 2018. Doctoral Dissertation, Washington University in St. Louis. Accessed August 08, 2020. https://openscholarship.wustl.edu/eng_etds/388.

MLA Handbook (7th Edition):

Xu, Jiajing. “KCNQ1/KCNE1 Interaction in the Cardiac IKs Channel and its Physiological Consequences.” 2018. Web. 08 Aug 2020.

Vancouver:

Xu J. KCNQ1/KCNE1 Interaction in the Cardiac IKs Channel and its Physiological Consequences. [Internet] [Doctoral dissertation]. Washington University in St. Louis; 2018. [cited 2020 Aug 08]. Available from: https://openscholarship.wustl.edu/eng_etds/388.

Council of Science Editors:

Xu J. KCNQ1/KCNE1 Interaction in the Cardiac IKs Channel and its Physiological Consequences. [Doctoral Dissertation]. Washington University in St. Louis; 2018. Available from: https://openscholarship.wustl.edu/eng_etds/388

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