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Dept: Biomedical Engineering  Language: English

You searched for subject:(Molecular Dynamics). Showing records 1 – 10 of 10 total matches.

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Rutgers University

1. Schmidt, Kassandra L., 1992-. Computational studies of peptide self-assembly.

Degree: MS, Biomedical Engineering, 2019, Rutgers University

 Research into novel biological materials for use in biomedical applications is guided by the formation of supramolecular structures which have properties resultant from the characteristics… (more)

Subjects/Keywords: Molecular Dynamics; Peptides  – Synthesis

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APA (6th Edition):

Schmidt, Kassandra L., 1. (2019). Computational studies of peptide self-assembly. (Masters Thesis). Rutgers University. Retrieved from https://rucore.libraries.rutgers.edu/rutgers-lib/61944/

Chicago Manual of Style (16th Edition):

Schmidt, Kassandra L., 1992-. “Computational studies of peptide self-assembly.” 2019. Masters Thesis, Rutgers University. Accessed October 31, 2020. https://rucore.libraries.rutgers.edu/rutgers-lib/61944/.

MLA Handbook (7th Edition):

Schmidt, Kassandra L., 1992-. “Computational studies of peptide self-assembly.” 2019. Web. 31 Oct 2020.

Vancouver:

Schmidt, Kassandra L. 1. Computational studies of peptide self-assembly. [Internet] [Masters thesis]. Rutgers University; 2019. [cited 2020 Oct 31]. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/61944/.

Council of Science Editors:

Schmidt, Kassandra L. 1. Computational studies of peptide self-assembly. [Masters Thesis]. Rutgers University; 2019. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/61944/


Texas A&M University

2. Lakkaraju, Sirish. Computational Studies on the Mechanical Inhomogeneity of Tropomyosin, and the Directed and Cooperative Motility of the Ncd Motor.

Degree: PhD, Biomedical Engineering, 2012, Texas A&M University

 Alpha-helical coiled-coils are common protein structural motifs with varied mechanical roles, such as, tropomyosin in muscle contraction or neck-stalks of kinesins and myosins, in motor… (more)

Subjects/Keywords: Tropomyosin; Kinesin-14; Ncd; Motors; coiled-coils; critical buckling length; targeted molecular dynamics; cooperativity

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APA (6th Edition):

Lakkaraju, S. (2012). Computational Studies on the Mechanical Inhomogeneity of Tropomyosin, and the Directed and Cooperative Motility of the Ncd Motor. (Doctoral Dissertation). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/ETD-TAMU-2011-12-10316

Chicago Manual of Style (16th Edition):

Lakkaraju, Sirish. “Computational Studies on the Mechanical Inhomogeneity of Tropomyosin, and the Directed and Cooperative Motility of the Ncd Motor.” 2012. Doctoral Dissertation, Texas A&M University. Accessed October 31, 2020. http://hdl.handle.net/1969.1/ETD-TAMU-2011-12-10316.

MLA Handbook (7th Edition):

Lakkaraju, Sirish. “Computational Studies on the Mechanical Inhomogeneity of Tropomyosin, and the Directed and Cooperative Motility of the Ncd Motor.” 2012. Web. 31 Oct 2020.

Vancouver:

Lakkaraju S. Computational Studies on the Mechanical Inhomogeneity of Tropomyosin, and the Directed and Cooperative Motility of the Ncd Motor. [Internet] [Doctoral dissertation]. Texas A&M University; 2012. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-2011-12-10316.

Council of Science Editors:

Lakkaraju S. Computational Studies on the Mechanical Inhomogeneity of Tropomyosin, and the Directed and Cooperative Motility of the Ncd Motor. [Doctoral Dissertation]. Texas A&M University; 2012. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-2011-12-10316


Texas A&M University

3. Teng, Xiaojing. Mechanical Analysis of Collagen and DNA.

Degree: PhD, Biomedical Engineering, 2016, Texas A&M University

 It is known that mechanics plays a central role in many biological events. Tissue can remodel and turnover to adapt to new mechanical environment, such… (more)

Subjects/Keywords: Molecular Dynamics; Fibril Collagen; DNA; Mechanical Property; Stiffness

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APA (6th Edition):

Teng, X. (2016). Mechanical Analysis of Collagen and DNA. (Doctoral Dissertation). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/174290

Chicago Manual of Style (16th Edition):

Teng, Xiaojing. “Mechanical Analysis of Collagen and DNA.” 2016. Doctoral Dissertation, Texas A&M University. Accessed October 31, 2020. http://hdl.handle.net/1969.1/174290.

MLA Handbook (7th Edition):

Teng, Xiaojing. “Mechanical Analysis of Collagen and DNA.” 2016. Web. 31 Oct 2020.

Vancouver:

Teng X. Mechanical Analysis of Collagen and DNA. [Internet] [Doctoral dissertation]. Texas A&M University; 2016. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/1969.1/174290.

Council of Science Editors:

Teng X. Mechanical Analysis of Collagen and DNA. [Doctoral Dissertation]. Texas A&M University; 2016. Available from: http://hdl.handle.net/1969.1/174290


University of Minnesota

4. Braun, Anthony Robert. Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling.

Degree: PhD, Biomedical Engineering, 2014, University of Minnesota

 Alpha-Synuclein (aSyn) is a 140 amino acid, intrinsically disordered protein that adopts an extended amphipathic alpha-helical structure upon binding the membrane. aSyn is the major… (more)

Subjects/Keywords: Alpha synuclein; Bending rigidity; Molecular dynamics; Biomedical engineering

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APA (6th Edition):

Braun, A. R. (2014). Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling. (Doctoral Dissertation). University of Minnesota. Retrieved from http://hdl.handle.net/11299/166598

Chicago Manual of Style (16th Edition):

Braun, Anthony Robert. “Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling.” 2014. Doctoral Dissertation, University of Minnesota. Accessed October 31, 2020. http://hdl.handle.net/11299/166598.

MLA Handbook (7th Edition):

Braun, Anthony Robert. “Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling.” 2014. Web. 31 Oct 2020.

Vancouver:

Braun AR. Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling. [Internet] [Doctoral dissertation]. University of Minnesota; 2014. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/11299/166598.

Council of Science Editors:

Braun AR. Understanding the membrane biophysics of alpha-Synuclein and its role in membrane curvature induction and structural remodeling. [Doctoral Dissertation]. University of Minnesota; 2014. Available from: http://hdl.handle.net/11299/166598


University of Minnesota

5. Chan, Clarence Elvin. Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission.

Degree: PhD, Biomedical Engineering, 2008, University of Minnesota

 As the major structural element of the cell, the cytoskeleton plays a vital role in response and transmission of forces in both extracellular and intracellular… (more)

Subjects/Keywords: Cellular adhesion dynamics; Focal adhesions; Integrins; Kinetochores; Molecular clutch; Biomedical Engineering

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APA (6th Edition):

Chan, C. E. (2008). Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission. (Doctoral Dissertation). University of Minnesota. Retrieved from http://purl.umn.edu/58039

Chicago Manual of Style (16th Edition):

Chan, Clarence Elvin. “Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission.” 2008. Doctoral Dissertation, University of Minnesota. Accessed October 31, 2020. http://purl.umn.edu/58039.

MLA Handbook (7th Edition):

Chan, Clarence Elvin. “Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission.” 2008. Web. 31 Oct 2020.

Vancouver:

Chan CE. Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission. [Internet] [Doctoral dissertation]. University of Minnesota; 2008. [cited 2020 Oct 31]. Available from: http://purl.umn.edu/58039.

Council of Science Editors:

Chan CE. Cellular adhesion dynamics: investigation of molecular clutch attachment and force transmission. [Doctoral Dissertation]. University of Minnesota; 2008. Available from: http://purl.umn.edu/58039


University of Minnesota

6. Perlmutter, Jason David. Molecular dynamics simulations of membranes and membrane proteins.

Degree: Biomedical Engineering, 2011, University of Minnesota

 Membranes composed of a lipid bilayer and embedded proteins are ubiquitous in nature. They form the barrier which demarcates every cell from its environment and… (more)

Subjects/Keywords: Amphipols; Coarse-Grained; Lipid Bilayers; Membrane Proteins; Molecular Dynamics; Biomedical Engineering

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APA (6th Edition):

Perlmutter, J. D. (2011). Molecular dynamics simulations of membranes and membrane proteins. (Thesis). University of Minnesota. Retrieved from http://purl.umn.edu/113510

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Perlmutter, Jason David. “Molecular dynamics simulations of membranes and membrane proteins.” 2011. Thesis, University of Minnesota. Accessed October 31, 2020. http://purl.umn.edu/113510.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Perlmutter, Jason David. “Molecular dynamics simulations of membranes and membrane proteins.” 2011. Web. 31 Oct 2020.

Vancouver:

Perlmutter JD. Molecular dynamics simulations of membranes and membrane proteins. [Internet] [Thesis]. University of Minnesota; 2011. [cited 2020 Oct 31]. Available from: http://purl.umn.edu/113510.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Perlmutter JD. Molecular dynamics simulations of membranes and membrane proteins. [Thesis]. University of Minnesota; 2011. Available from: http://purl.umn.edu/113510

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Minnesota

7. Brummel, Benjamin. The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy.

Degree: PhD, Biomedical Engineering, 2018, University of Minnesota

 The protein α-synuclein (αSyn), primarily recognized for its link to neurodegenerative disorders, has multiple reported functions. One well-established role of αSyn is its ability to… (more)

Subjects/Keywords: Atomic Force Microscopy; Lipids; Membrane Proteins; Molecular Dynamics; Synuclein

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APA (6th Edition):

Brummel, B. (2018). The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy. (Doctoral Dissertation). University of Minnesota. Retrieved from http://hdl.handle.net/11299/201069

Chicago Manual of Style (16th Edition):

Brummel, Benjamin. “The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy.” 2018. Doctoral Dissertation, University of Minnesota. Accessed October 31, 2020. http://hdl.handle.net/11299/201069.

MLA Handbook (7th Edition):

Brummel, Benjamin. “The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy.” 2018. Web. 31 Oct 2020.

Vancouver:

Brummel B. The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy. [Internet] [Doctoral dissertation]. University of Minnesota; 2018. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/11299/201069.

Council of Science Editors:

Brummel B. The Effect of α-Synuclein on Lipid Membrane Properties Characterized by Molecular Dynamics and Atomic Force Microscopy. [Doctoral Dissertation]. University of Minnesota; 2018. Available from: http://hdl.handle.net/11299/201069

8. Fonner, John Michael. Molecular investigation of polypyrrole and surface recognition by affinity peptides.

Degree: PhD, Biomedical Engineering, 2011, University of Texas – Austin

 Successful tissue engineering strategies in the nervous system must be carefully crafted to interact favorably with the complex biochemical signals of the native environment. To… (more)

Subjects/Keywords: Polypyrrole; Conducting polymers; Molecular dynamics; Binding affinity; Computational biology

…Replica Exchange Molecular Dynamics ..............................................95… …visualize the trajectory of molecular dynamics simulations and to observe trends in the data… …background and significance of polypyrrole as a biomaterial and the current state of molecular… …we discuss the molecular mechanics model that we created for polypyrrole. Starting from ab… …with complex materials surfaces is a mostly unexplored application of molecular modeling… 

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APA (6th Edition):

Fonner, J. M. (2011). Molecular investigation of polypyrrole and surface recognition by affinity peptides. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/ETD-UT-2011-12-4408

Chicago Manual of Style (16th Edition):

Fonner, John Michael. “Molecular investigation of polypyrrole and surface recognition by affinity peptides.” 2011. Doctoral Dissertation, University of Texas – Austin. Accessed October 31, 2020. http://hdl.handle.net/2152/ETD-UT-2011-12-4408.

MLA Handbook (7th Edition):

Fonner, John Michael. “Molecular investigation of polypyrrole and surface recognition by affinity peptides.” 2011. Web. 31 Oct 2020.

Vancouver:

Fonner JM. Molecular investigation of polypyrrole and surface recognition by affinity peptides. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2011. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/2152/ETD-UT-2011-12-4408.

Council of Science Editors:

Fonner JM. Molecular investigation of polypyrrole and surface recognition by affinity peptides. [Doctoral Dissertation]. University of Texas – Austin; 2011. Available from: http://hdl.handle.net/2152/ETD-UT-2011-12-4408


University of Texas – Austin

9. Zhang, Jiajing. Insight into biomolecular structure, interaction and energetics from modeling and simulation.

Degree: PhD, Biomedical Engineering, 2011, University of Texas – Austin

 A central goal of computational biophysics and biochemistry is to understand the behavior, interactions, and reactions of molecules, and to interpret and facilitate experimental design.… (more)

Subjects/Keywords: Molecular modeling; Molecular dynamics simulation; Protein-ligand binding free energy calculation

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APA (6th Edition):

Zhang, J. (2011). Insight into biomolecular structure, interaction and energetics from modeling and simulation. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/20672

Chicago Manual of Style (16th Edition):

Zhang, Jiajing. “Insight into biomolecular structure, interaction and energetics from modeling and simulation.” 2011. Doctoral Dissertation, University of Texas – Austin. Accessed October 31, 2020. http://hdl.handle.net/2152/20672.

MLA Handbook (7th Edition):

Zhang, Jiajing. “Insight into biomolecular structure, interaction and energetics from modeling and simulation.” 2011. Web. 31 Oct 2020.

Vancouver:

Zhang J. Insight into biomolecular structure, interaction and energetics from modeling and simulation. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2011. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/2152/20672.

Council of Science Editors:

Zhang J. Insight into biomolecular structure, interaction and energetics from modeling and simulation. [Doctoral Dissertation]. University of Texas – Austin; 2011. Available from: http://hdl.handle.net/2152/20672

10. Xia, Zhen, active 2013. Modeling the structure, dynamics, and interactions of biological molecules.

Degree: PhD, Biomedical Engineering, 2013, University of Texas – Austin

 Biological molecules are essential parts of organisms and participate in a variety of biological processes within cells. Understanding the relationship between sequence, structure, and function… (more)

Subjects/Keywords: Structural modeling; Molecular dynamics; Protein; RNA; Coarse-grained model; Atomistic model; RNA silencing; Influenza; Polarizable force field

…76 5 Molecular Dynamics Simulations of Ago Silencing Complexes .......................83… …83 5.2 Methods for Molecular Dynamics Simulations ......................................85… …of ala-2, ala-3, and ala-4 residues in replica exchange molecular dynamics simulation of… …heteroduplex for the wild-type during the 100-ns molecular dynamics simulation. The conformational… …molecular dynamics simulations to reveal the biological processes, which occur on the time and… 

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APA (6th Edition):

Xia, Zhen, a. 2. (2013). Modeling the structure, dynamics, and interactions of biological molecules. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/21875

Chicago Manual of Style (16th Edition):

Xia, Zhen, active 2013. “Modeling the structure, dynamics, and interactions of biological molecules.” 2013. Doctoral Dissertation, University of Texas – Austin. Accessed October 31, 2020. http://hdl.handle.net/2152/21875.

MLA Handbook (7th Edition):

Xia, Zhen, active 2013. “Modeling the structure, dynamics, and interactions of biological molecules.” 2013. Web. 31 Oct 2020.

Vancouver:

Xia, Zhen a2. Modeling the structure, dynamics, and interactions of biological molecules. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2013. [cited 2020 Oct 31]. Available from: http://hdl.handle.net/2152/21875.

Council of Science Editors:

Xia, Zhen a2. Modeling the structure, dynamics, and interactions of biological molecules. [Doctoral Dissertation]. University of Texas – Austin; 2013. Available from: http://hdl.handle.net/2152/21875

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