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You searched for subject:(Haplotype assembly). Showing records 1 – 8 of 8 total matches.

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University of Texas – Austin

1. Puljiz, Zrinka. State reconstruction from partial observations: theory and applications.

Degree: Electrical and Computer Engineering, 2015, University of Texas – Austin

 This thesis considers the problem of signal reconstruction in the setting of partial observations. We consider this in three different contexts. First, we consider the… (more)

Subjects/Keywords: Haplotype assembly; Pilot contamination; Signal reconstruction

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Puljiz, Z. (2015). State reconstruction from partial observations: theory and applications. (Thesis). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/33333

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Puljiz, Zrinka. “State reconstruction from partial observations: theory and applications.” 2015. Thesis, University of Texas – Austin. Accessed June 19, 2019. http://hdl.handle.net/2152/33333.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Puljiz, Zrinka. “State reconstruction from partial observations: theory and applications.” 2015. Web. 19 Jun 2019.

Vancouver:

Puljiz Z. State reconstruction from partial observations: theory and applications. [Internet] [Thesis]. University of Texas – Austin; 2015. [cited 2019 Jun 19]. Available from: http://hdl.handle.net/2152/33333.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Puljiz Z. State reconstruction from partial observations: theory and applications. [Thesis]. University of Texas – Austin; 2015. Available from: http://hdl.handle.net/2152/33333

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

2. -5066-7722. Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing.

Degree: Electrical and Computer Engineering, 2015, University of Texas – Austin

 This thesis comprises of two related but distinct components: Coding arguments for communication channels and information-theoretic analysis for haplotype assembly. The common thread for both… (more)

Subjects/Keywords: Expansion coding; Polar coding; Haplotype assembly

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

-5066-7722. (2015). Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing. (Thesis). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/31408

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

-5066-7722. “Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing.” 2015. Thesis, University of Texas – Austin. Accessed June 19, 2019. http://hdl.handle.net/2152/31408.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

-5066-7722. “Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing.” 2015. Web. 19 Jun 2019.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Vancouver:

-5066-7722. Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing. [Internet] [Thesis]. University of Texas – Austin; 2015. [cited 2019 Jun 19]. Available from: http://hdl.handle.net/2152/31408.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

-5066-7722. Coding mechanisms for communication and compression : analysis of wireless channels and DNA sequencing. [Thesis]. University of Texas – Austin; 2015. Available from: http://hdl.handle.net/2152/31408

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation


University of California – Berkeley

3. Berger, Emily Rita. Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X.

Degree: Mathematics, 2015, University of California – Berkeley

 Identifying phase information is biomedically important due to the association of complex haplotype effects, such as compound heterozygosity, with disease. As recent next-generation sequencing (NGS)… (more)

Subjects/Keywords: Mathematics; Computer science; Genetics; Haplotype Assembly; Haplotype Reconstruction; Phasing; Polyploid; Probability; RNA-seq

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Berger, E. R. (2015). Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X. (Thesis). University of California – Berkeley. Retrieved from http://www.escholarship.org/uc/item/4998223c

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Berger, Emily Rita. “Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X.” 2015. Thesis, University of California – Berkeley. Accessed June 19, 2019. http://www.escholarship.org/uc/item/4998223c.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Berger, Emily Rita. “Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X.” 2015. Web. 19 Jun 2019.

Vancouver:

Berger ER. Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X. [Internet] [Thesis]. University of California – Berkeley; 2015. [cited 2019 Jun 19]. Available from: http://www.escholarship.org/uc/item/4998223c.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Berger ER. Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X. [Thesis]. University of California – Berkeley; 2015. Available from: http://www.escholarship.org/uc/item/4998223c

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Brigham Young University

4. Price, Jared Calvin. The Bioluminescence Heterozygous Genome Assembler.

Degree: MS, 2014, Brigham Young University

  High-throughput DNA sequencing technologies are currently revolutionizing the fields of biology and medicine by elucidating the structure and function of the components of life.… (more)

Subjects/Keywords: genome; genome assembly; polymorphic; polymorphism; heterozygous; haplotype; algorithm; Computer Sciences

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Price, J. C. (2014). The Bioluminescence Heterozygous Genome Assembler. (Masters Thesis). Brigham Young University. Retrieved from https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5345&context=etd

Chicago Manual of Style (16th Edition):

Price, Jared Calvin. “The Bioluminescence Heterozygous Genome Assembler.” 2014. Masters Thesis, Brigham Young University. Accessed June 19, 2019. https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5345&context=etd.

MLA Handbook (7th Edition):

Price, Jared Calvin. “The Bioluminescence Heterozygous Genome Assembler.” 2014. Web. 19 Jun 2019.

Vancouver:

Price JC. The Bioluminescence Heterozygous Genome Assembler. [Internet] [Masters thesis]. Brigham Young University; 2014. [cited 2019 Jun 19]. Available from: https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5345&context=etd.

Council of Science Editors:

Price JC. The Bioluminescence Heterozygous Genome Assembler. [Masters Thesis]. Brigham Young University; 2014. Available from: https://scholarsarchive.byu.edu/cgi/viewcontent.cgi?article=5345&context=etd


University of California – San Diego

5. Yuan, Jeffrey. Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs.

Degree: Bioinformatics and Systems Biology, 2019, University of California – San Diego

 Genome assembly is the problem of reconstructing genomes from DNA sequence reads. Even the best assemblies are often fragmented due to the presence of repetitive… (more)

Subjects/Keywords: Bioinformatics; Assembly Graph; De Bruijn Graph; Genome Assembly; Haplotype Assembly; Single Molecule Sequencing; Third Generation Sequencing

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Yuan, J. (2019). Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs. (Thesis). University of California – San Diego. Retrieved from http://www.escholarship.org/uc/item/62v8d30p

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Yuan, Jeffrey. “Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs.” 2019. Thesis, University of California – San Diego. Accessed June 19, 2019. http://www.escholarship.org/uc/item/62v8d30p.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Yuan, Jeffrey. “Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs.” 2019. Web. 19 Jun 2019.

Vancouver:

Yuan J. Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs. [Internet] [Thesis]. University of California – San Diego; 2019. [cited 2019 Jun 19]. Available from: http://www.escholarship.org/uc/item/62v8d30p.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Yuan J. Genome Assembly of Long Error-Prone Reads Using De Bruijn Graphs and Repeat Graphs. [Thesis]. University of California – San Diego; 2019. Available from: http://www.escholarship.org/uc/item/62v8d30p

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


NSYSU

6. Wei, Liang-Tai. Ant Colony Optimization Algorithms for Sequence Assembly with Haplotyping.

Degree: Master, Computer Science and Engineering, 2005, NSYSU

 The Human Genome Project completed in 2003 and the draft of human genome sequences were also yielded. It has been known that any two human… (more)

Subjects/Keywords: Haplotype; Dynamic Programming; Sequence Assembly; Ant Colony Optimization Algorithms

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Wei, L. (2005). Ant Colony Optimization Algorithms for Sequence Assembly with Haplotyping. (Thesis). NSYSU. Retrieved from http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0824105-164952

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Wei, Liang-Tai. “Ant Colony Optimization Algorithms for Sequence Assembly with Haplotyping.” 2005. Thesis, NSYSU. Accessed June 19, 2019. http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0824105-164952.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Wei, Liang-Tai. “Ant Colony Optimization Algorithms for Sequence Assembly with Haplotyping.” 2005. Web. 19 Jun 2019.

Vancouver:

Wei L. Ant Colony Optimization Algorithms for Sequence Assembly with Haplotyping. [Internet] [Thesis]. NSYSU; 2005. [cited 2019 Jun 19]. Available from: http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0824105-164952.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Wei L. Ant Colony Optimization Algorithms for Sequence Assembly with Haplotyping. [Thesis]. NSYSU; 2005. Available from: http://etd.lib.nsysu.edu.tw/ETD-db/ETD-search/view_etd?URN=etd-0824105-164952

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Texas – Austin

7. -1260-0121. Computational methods for understanding genetic variations from next generation sequencing data.

Degree: Electrical and Computer Engineering, 2018, University of Texas – Austin

 Studies of human genetic variation reveal critical information about genetic and complex diseases such as cancer, diabetes and heart disease, ultimately leading towards improvements in… (more)

Subjects/Keywords: Genetic variation; Next-generation sequencing; Haplotype assembly; Quasispecies reconstruction; Sequential Monte Carlo; Bayesian inference; Tensor factorization

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

-1260-0121. (2018). Computational methods for understanding genetic variations from next generation sequencing data. (Thesis). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/68413

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

-1260-0121. “Computational methods for understanding genetic variations from next generation sequencing data.” 2018. Thesis, University of Texas – Austin. Accessed June 19, 2019. http://hdl.handle.net/2152/68413.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

-1260-0121. “Computational methods for understanding genetic variations from next generation sequencing data.” 2018. Web. 19 Jun 2019.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Vancouver:

-1260-0121. Computational methods for understanding genetic variations from next generation sequencing data. [Internet] [Thesis]. University of Texas – Austin; 2018. [cited 2019 Jun 19]. Available from: http://hdl.handle.net/2152/68413.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

-1260-0121. Computational methods for understanding genetic variations from next generation sequencing data. [Thesis]. University of Texas – Austin; 2018. Available from: http://hdl.handle.net/2152/68413

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete
Not specified: Masters Thesis or Doctoral Dissertation


University of Queensland

8. Zhou, Chenxi. Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato.

Degree: Institute for Molecular Bioscience, 2019, University of Queensland

Subjects/Keywords: Bioinformatics; Computational biology; Genomics; Genetic mapping; Haplotype phasing; Linkage analysis; Plant genomes; Chloroplast; Polyploid; Genome assembly; 0604 Genetics; 0706 Horticultural Production; 0803 Computer Software

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Zhou, C. (2019). Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato. (Thesis). University of Queensland. Retrieved from http://espace.library.uq.edu.au/view/UQ:1270

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Zhou, Chenxi. “Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato.” 2019. Thesis, University of Queensland. Accessed June 19, 2019. http://espace.library.uq.edu.au/view/UQ:1270.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Zhou, Chenxi. “Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato.” 2019. Web. 19 Jun 2019.

Vancouver:

Zhou C. Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato. [Internet] [Thesis]. University of Queensland; 2019. [cited 2019 Jun 19]. Available from: http://espace.library.uq.edu.au/view/UQ:1270.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Zhou C. Development of computational tools for analysis of polyploid plant genomes with application to hexaploid sweetpotato. [Thesis]. University of Queensland; 2019. Available from: http://espace.library.uq.edu.au/view/UQ:1270

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

.