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You searched for subject:(Coarse grained models). Showing records 1 – 18 of 18 total matches.

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Rice University

1. Yrazu, Fernando Miguel. Cracking the spectrins' riddle.

Degree: PhD, Chemical Engineering, 2017, Rice University

 The contrasting folding characteristics of three protein segments, each belonging to the same three-helix bundle family, have been the subject of experimental studies for more… (more)

Subjects/Keywords: coarse grained models; spectrins; structure based models

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APA (6th Edition):

Yrazu, F. M. (2017). Cracking the spectrins' riddle. (Doctoral Dissertation). Rice University. Retrieved from http://hdl.handle.net/1911/105473

Chicago Manual of Style (16th Edition):

Yrazu, Fernando Miguel. “Cracking the spectrins' riddle.” 2017. Doctoral Dissertation, Rice University. Accessed January 16, 2021. http://hdl.handle.net/1911/105473.

MLA Handbook (7th Edition):

Yrazu, Fernando Miguel. “Cracking the spectrins' riddle.” 2017. Web. 16 Jan 2021.

Vancouver:

Yrazu FM. Cracking the spectrins' riddle. [Internet] [Doctoral dissertation]. Rice University; 2017. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1911/105473.

Council of Science Editors:

Yrazu FM. Cracking the spectrins' riddle. [Doctoral Dissertation]. Rice University; 2017. Available from: http://hdl.handle.net/1911/105473


Rice University

2. Yrazu, Fernando Miguel. Cracking the spectrins' riddle.

Degree: PhD, Engineering, 2017, Rice University

 The contrasting folding characteristics of three protein segments, each belonging to the same three-helix bundle family, have been the subject of experimental studies for more… (more)

Subjects/Keywords: coarse grained models; spectrins; structure based models

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APA (6th Edition):

Yrazu, F. M. (2017). Cracking the spectrins' riddle. (Doctoral Dissertation). Rice University. Retrieved from http://hdl.handle.net/1911/105472

Chicago Manual of Style (16th Edition):

Yrazu, Fernando Miguel. “Cracking the spectrins' riddle.” 2017. Doctoral Dissertation, Rice University. Accessed January 16, 2021. http://hdl.handle.net/1911/105472.

MLA Handbook (7th Edition):

Yrazu, Fernando Miguel. “Cracking the spectrins' riddle.” 2017. Web. 16 Jan 2021.

Vancouver:

Yrazu FM. Cracking the spectrins' riddle. [Internet] [Doctoral dissertation]. Rice University; 2017. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1911/105472.

Council of Science Editors:

Yrazu FM. Cracking the spectrins' riddle. [Doctoral Dissertation]. Rice University; 2017. Available from: http://hdl.handle.net/1911/105472


Arizona State University

3. Agrawal, Vipin. Predicting Structure-Property Relationships in Polymers through the Development of Thermodynamically Consistent Coarse-Grained Molecular Models.

Degree: Mechanical Engineering, 2016, Arizona State University

 Improved knowledge connecting the chemistry, structure, and properties of polymers is necessary to develop advanced materials in a materials-by-design approach. Molecular dynamics (MD) simulations can… (more)

Subjects/Keywords: Engineering; Mechanical engineering; Coarse-Grained models; Polyethylene; Polymers; Polyurea

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APA (6th Edition):

Agrawal, V. (2016). Predicting Structure-Property Relationships in Polymers through the Development of Thermodynamically Consistent Coarse-Grained Molecular Models. (Doctoral Dissertation). Arizona State University. Retrieved from http://repository.asu.edu/items/40183

Chicago Manual of Style (16th Edition):

Agrawal, Vipin. “Predicting Structure-Property Relationships in Polymers through the Development of Thermodynamically Consistent Coarse-Grained Molecular Models.” 2016. Doctoral Dissertation, Arizona State University. Accessed January 16, 2021. http://repository.asu.edu/items/40183.

MLA Handbook (7th Edition):

Agrawal, Vipin. “Predicting Structure-Property Relationships in Polymers through the Development of Thermodynamically Consistent Coarse-Grained Molecular Models.” 2016. Web. 16 Jan 2021.

Vancouver:

Agrawal V. Predicting Structure-Property Relationships in Polymers through the Development of Thermodynamically Consistent Coarse-Grained Molecular Models. [Internet] [Doctoral dissertation]. Arizona State University; 2016. [cited 2021 Jan 16]. Available from: http://repository.asu.edu/items/40183.

Council of Science Editors:

Agrawal V. Predicting Structure-Property Relationships in Polymers through the Development of Thermodynamically Consistent Coarse-Grained Molecular Models. [Doctoral Dissertation]. Arizona State University; 2016. Available from: http://repository.asu.edu/items/40183


Duke University

4. Altan, Irem. Understanding the Structure and Formation of Protein Crystals Using Computer Simulation and Theory .

Degree: 2019, Duke University

  The complexity of protein-protein interactions enables proteins to self-assemble into a rich array of structures, such as virus capsids, amyloid fibers, amorphous aggregates, and… (more)

Subjects/Keywords: Computational chemistry; Biophysics; Statistical physics; biomolecular solvation; coarse-grained models; protein crystallization; self-assembly

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APA (6th Edition):

Altan, I. (2019). Understanding the Structure and Formation of Protein Crystals Using Computer Simulation and Theory . (Thesis). Duke University. Retrieved from http://hdl.handle.net/10161/20129

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Altan, Irem. “Understanding the Structure and Formation of Protein Crystals Using Computer Simulation and Theory .” 2019. Thesis, Duke University. Accessed January 16, 2021. http://hdl.handle.net/10161/20129.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Altan, Irem. “Understanding the Structure and Formation of Protein Crystals Using Computer Simulation and Theory .” 2019. Web. 16 Jan 2021.

Vancouver:

Altan I. Understanding the Structure and Formation of Protein Crystals Using Computer Simulation and Theory . [Internet] [Thesis]. Duke University; 2019. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/10161/20129.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Altan I. Understanding the Structure and Formation of Protein Crystals Using Computer Simulation and Theory . [Thesis]. Duke University; 2019. Available from: http://hdl.handle.net/10161/20129

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Edinburgh

5. Gkeka, Paraskevi. Molecular dynamics studies of peptide-membrane interactions : insights from coarse-grained models.

Degree: PhD, 2010, University of Edinburgh

 Peptide-membrane interactions play an important role in a number of biological processes, such as antimicrobial defence mechanisms, viral translocation, membrane fusion and functions ofmembrane proteins.… (more)

Subjects/Keywords: 572; molecular dynamics; simulation; coarse-grained models

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APA (6th Edition):

Gkeka, P. (2010). Molecular dynamics studies of peptide-membrane interactions : insights from coarse-grained models. (Doctoral Dissertation). University of Edinburgh. Retrieved from http://hdl.handle.net/1842/4652

Chicago Manual of Style (16th Edition):

Gkeka, Paraskevi. “Molecular dynamics studies of peptide-membrane interactions : insights from coarse-grained models.” 2010. Doctoral Dissertation, University of Edinburgh. Accessed January 16, 2021. http://hdl.handle.net/1842/4652.

MLA Handbook (7th Edition):

Gkeka, Paraskevi. “Molecular dynamics studies of peptide-membrane interactions : insights from coarse-grained models.” 2010. Web. 16 Jan 2021.

Vancouver:

Gkeka P. Molecular dynamics studies of peptide-membrane interactions : insights from coarse-grained models. [Internet] [Doctoral dissertation]. University of Edinburgh; 2010. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1842/4652.

Council of Science Editors:

Gkeka P. Molecular dynamics studies of peptide-membrane interactions : insights from coarse-grained models. [Doctoral Dissertation]. University of Edinburgh; 2010. Available from: http://hdl.handle.net/1842/4652


Rice University

6. Truong, Ha Huynh. Exploring the Folding Energy Landscape: Designed, Simplified, and α-helical Membrane Proteins.

Degree: PhD, Natural Sciences, 2016, Rice University

 This thesis discusses our efforts in using the energy landscape theory and coarse-grained molecular dynamics protein folding models to explore the folding energy landscape of… (more)

Subjects/Keywords: Protein folding; Protein structure prediction; Binding interface prediction; Coarse-grained models; Molecular dynamics; Energy Landscape Theory

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APA (6th Edition):

Truong, H. H. (2016). Exploring the Folding Energy Landscape: Designed, Simplified, and α-helical Membrane Proteins. (Doctoral Dissertation). Rice University. Retrieved from http://hdl.handle.net/1911/96518

Chicago Manual of Style (16th Edition):

Truong, Ha Huynh. “Exploring the Folding Energy Landscape: Designed, Simplified, and α-helical Membrane Proteins.” 2016. Doctoral Dissertation, Rice University. Accessed January 16, 2021. http://hdl.handle.net/1911/96518.

MLA Handbook (7th Edition):

Truong, Ha Huynh. “Exploring the Folding Energy Landscape: Designed, Simplified, and α-helical Membrane Proteins.” 2016. Web. 16 Jan 2021.

Vancouver:

Truong HH. Exploring the Folding Energy Landscape: Designed, Simplified, and α-helical Membrane Proteins. [Internet] [Doctoral dissertation]. Rice University; 2016. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1911/96518.

Council of Science Editors:

Truong HH. Exploring the Folding Energy Landscape: Designed, Simplified, and α-helical Membrane Proteins. [Doctoral Dissertation]. Rice University; 2016. Available from: http://hdl.handle.net/1911/96518


University of Iowa

7. Li, Shuxiang. Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model.

Degree: PhD, Biochemistry, 2017, University of Iowa

  Computer simulations provide a potentially powerful complement to conventional experimental techniques in elucidating the structures, dynamics and interactions of macromolecules. In this thesis, I… (more)

Subjects/Keywords: Chromosome model; Coarse-grained models; DNA supercoiling; Intrinsic conformational preference; Molecular dynamics simulation; Neighboring residue effects; Biochemistry

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APA (6th Edition):

Li, S. (2017). Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model. (Doctoral Dissertation). University of Iowa. Retrieved from https://ir.uiowa.edu/etd/5960

Chicago Manual of Style (16th Edition):

Li, Shuxiang. “Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model.” 2017. Doctoral Dissertation, University of Iowa. Accessed January 16, 2021. https://ir.uiowa.edu/etd/5960.

MLA Handbook (7th Edition):

Li, Shuxiang. “Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model.” 2017. Web. 16 Jan 2021.

Vancouver:

Li S. Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model. [Internet] [Doctoral dissertation]. University of Iowa; 2017. [cited 2021 Jan 16]. Available from: https://ir.uiowa.edu/etd/5960.

Council of Science Editors:

Li S. Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model. [Doctoral Dissertation]. University of Iowa; 2017. Available from: https://ir.uiowa.edu/etd/5960

8. Goldtzvik, Yonathan Yitshak. UNDERSTANDING THE MOTILITY OF MOLECULAR MOTORS USING THEORY AND SIMULATIONS.

Degree: Biophysics (BIPH), 2017, University of Maryland

 Molecular motors are indispensable machines that are in charge of transporting cargoes within living cells. Despite recent advances in the study of these molecules, there… (more)

Subjects/Keywords: Biophysics; Biology; Molecular physics; Brownian Dynamics Simulations; Coarse Grained Models; Dynein; Kinesin; Molecular Motors; Motor Proteins

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APA (6th Edition):

Goldtzvik, Y. Y. (2017). UNDERSTANDING THE MOTILITY OF MOLECULAR MOTORS USING THEORY AND SIMULATIONS. (Thesis). University of Maryland. Retrieved from http://hdl.handle.net/1903/20356

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Goldtzvik, Yonathan Yitshak. “UNDERSTANDING THE MOTILITY OF MOLECULAR MOTORS USING THEORY AND SIMULATIONS.” 2017. Thesis, University of Maryland. Accessed January 16, 2021. http://hdl.handle.net/1903/20356.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Goldtzvik, Yonathan Yitshak. “UNDERSTANDING THE MOTILITY OF MOLECULAR MOTORS USING THEORY AND SIMULATIONS.” 2017. Web. 16 Jan 2021.

Vancouver:

Goldtzvik YY. UNDERSTANDING THE MOTILITY OF MOLECULAR MOTORS USING THEORY AND SIMULATIONS. [Internet] [Thesis]. University of Maryland; 2017. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1903/20356.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Goldtzvik YY. UNDERSTANDING THE MOTILITY OF MOLECULAR MOTORS USING THEORY AND SIMULATIONS. [Thesis]. University of Maryland; 2017. Available from: http://hdl.handle.net/1903/20356

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Lund

9. Kurut Sabanoglu, Anil. Anisotropic Protein Interactions in Salt Solutions and at Interfaces: Coarse Grained Modeling.

Degree: 2014, University of Lund

 Anisotropic protein interactions have a strong orientation dependence resulting from an uneven distribution of charged and hydrophobic residues on the protein surface. They play an… (more)

Subjects/Keywords: Theoretical Chemistry; Anisotropic interactions; protein electrostatics; phase association; surface adsorption; coarse grained models; Monte Carlo simulations

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APA (6th Edition):

Kurut Sabanoglu, A. (2014). Anisotropic Protein Interactions in Salt Solutions and at Interfaces: Coarse Grained Modeling. (Doctoral Dissertation). University of Lund. Retrieved from https://lup.lub.lu.se/record/4610736 ; https://portal.research.lu.se/ws/files/5797055/4610765.pdf

Chicago Manual of Style (16th Edition):

Kurut Sabanoglu, Anil. “Anisotropic Protein Interactions in Salt Solutions and at Interfaces: Coarse Grained Modeling.” 2014. Doctoral Dissertation, University of Lund. Accessed January 16, 2021. https://lup.lub.lu.se/record/4610736 ; https://portal.research.lu.se/ws/files/5797055/4610765.pdf.

MLA Handbook (7th Edition):

Kurut Sabanoglu, Anil. “Anisotropic Protein Interactions in Salt Solutions and at Interfaces: Coarse Grained Modeling.” 2014. Web. 16 Jan 2021.

Vancouver:

Kurut Sabanoglu A. Anisotropic Protein Interactions in Salt Solutions and at Interfaces: Coarse Grained Modeling. [Internet] [Doctoral dissertation]. University of Lund; 2014. [cited 2021 Jan 16]. Available from: https://lup.lub.lu.se/record/4610736 ; https://portal.research.lu.se/ws/files/5797055/4610765.pdf.

Council of Science Editors:

Kurut Sabanoglu A. Anisotropic Protein Interactions in Salt Solutions and at Interfaces: Coarse Grained Modeling. [Doctoral Dissertation]. University of Lund; 2014. Available from: https://lup.lub.lu.se/record/4610736 ; https://portal.research.lu.se/ws/files/5797055/4610765.pdf


University of Lund

10. Henriques, Joao. Modeling and simulation of intrinsically disordered proteins.

Degree: 2016, University of Lund

 This work is primarily about the development, validation and application of computer simulation models for intrinsically disordered proteins, both in solution and in the presence… (more)

Subjects/Keywords: Theoretical Chemistry; Intrinsically disordered proteins; Coarse-grained models; Atomistic models; Metropolis Monte Carlo simulations; Molecular dynamics simulations; Sampling; Conformational analysis; Charge regulation; Surface adsorption

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APA (6th Edition):

Henriques, J. (2016). Modeling and simulation of intrinsically disordered proteins. (Doctoral Dissertation). University of Lund. Retrieved from https://lup.lub.lu.se/record/9284f1ea-e14d-43fd-95d9-362a30aea721 ; https://portal.research.lu.se/ws/files/16773089/thesis_no_papers.pdf

Chicago Manual of Style (16th Edition):

Henriques, Joao. “Modeling and simulation of intrinsically disordered proteins.” 2016. Doctoral Dissertation, University of Lund. Accessed January 16, 2021. https://lup.lub.lu.se/record/9284f1ea-e14d-43fd-95d9-362a30aea721 ; https://portal.research.lu.se/ws/files/16773089/thesis_no_papers.pdf.

MLA Handbook (7th Edition):

Henriques, Joao. “Modeling and simulation of intrinsically disordered proteins.” 2016. Web. 16 Jan 2021.

Vancouver:

Henriques J. Modeling and simulation of intrinsically disordered proteins. [Internet] [Doctoral dissertation]. University of Lund; 2016. [cited 2021 Jan 16]. Available from: https://lup.lub.lu.se/record/9284f1ea-e14d-43fd-95d9-362a30aea721 ; https://portal.research.lu.se/ws/files/16773089/thesis_no_papers.pdf.

Council of Science Editors:

Henriques J. Modeling and simulation of intrinsically disordered proteins. [Doctoral Dissertation]. University of Lund; 2016. Available from: https://lup.lub.lu.se/record/9284f1ea-e14d-43fd-95d9-362a30aea721 ; https://portal.research.lu.se/ws/files/16773089/thesis_no_papers.pdf


University of Michigan

11. Gagnon, Jessica K. Flexible Receptor Docking Method Development and Molecular Dynamics Studies Towards Targeting Dynamic Protein Surfaces.

Degree: PhD, Chemistry, 2015, University of Michigan

 Protein-protein interactions are integral for cellular function, playing a huge role in processes such as cell signaling and transcription regulation. Targeting these essential interactions with… (more)

Subjects/Keywords: flexible receptor docking development; CHARMM simulation package; computational biophysics; protein-ligand interactions; KIX domain of CREB binding protein; coarse-grained go-like models; Chemistry; Science

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APA (6th Edition):

Gagnon, J. K. (2015). Flexible Receptor Docking Method Development and Molecular Dynamics Studies Towards Targeting Dynamic Protein Surfaces. (Doctoral Dissertation). University of Michigan. Retrieved from http://hdl.handle.net/2027.42/116710

Chicago Manual of Style (16th Edition):

Gagnon, Jessica K. “Flexible Receptor Docking Method Development and Molecular Dynamics Studies Towards Targeting Dynamic Protein Surfaces.” 2015. Doctoral Dissertation, University of Michigan. Accessed January 16, 2021. http://hdl.handle.net/2027.42/116710.

MLA Handbook (7th Edition):

Gagnon, Jessica K. “Flexible Receptor Docking Method Development and Molecular Dynamics Studies Towards Targeting Dynamic Protein Surfaces.” 2015. Web. 16 Jan 2021.

Vancouver:

Gagnon JK. Flexible Receptor Docking Method Development and Molecular Dynamics Studies Towards Targeting Dynamic Protein Surfaces. [Internet] [Doctoral dissertation]. University of Michigan; 2015. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/2027.42/116710.

Council of Science Editors:

Gagnon JK. Flexible Receptor Docking Method Development and Molecular Dynamics Studies Towards Targeting Dynamic Protein Surfaces. [Doctoral Dissertation]. University of Michigan; 2015. Available from: http://hdl.handle.net/2027.42/116710


University of Lund

12. Thuresson, Axel. Swelling and Microstructure of Nanoplatelet Systems.

Degree: 2017, University of Lund

 Many clay minerals consist of charged nanoplatelets that swell in an aqueous solution. The swelling and the microstructure depend on the type of clay mineral… (more)

Subjects/Keywords: Theoretical Chemistry; Nanoplatelets; Model clay system; Coarse grained models; Statistical mechanics; MC simulations; MD simulations; SAXS; Cryo-TEM; Laponite; Montmorillonite; Swelling; Tactoid

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APA (6th Edition):

Thuresson, A. (2017). Swelling and Microstructure of Nanoplatelet Systems. (Doctoral Dissertation). University of Lund. Retrieved from https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf

Chicago Manual of Style (16th Edition):

Thuresson, Axel. “Swelling and Microstructure of Nanoplatelet Systems.” 2017. Doctoral Dissertation, University of Lund. Accessed January 16, 2021. https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf.

MLA Handbook (7th Edition):

Thuresson, Axel. “Swelling and Microstructure of Nanoplatelet Systems.” 2017. Web. 16 Jan 2021.

Vancouver:

Thuresson A. Swelling and Microstructure of Nanoplatelet Systems. [Internet] [Doctoral dissertation]. University of Lund; 2017. [cited 2021 Jan 16]. Available from: https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf.

Council of Science Editors:

Thuresson A. Swelling and Microstructure of Nanoplatelet Systems. [Doctoral Dissertation]. University of Lund; 2017. Available from: https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf


Penn State University

13. Yuan, Hongyan. A SOLVENT-FREE COARSE-GRAINED MODEL FOR BIOLOGICAL AND BIOMIMETIC FLUID MEMBRANES.

Degree: 2010, Penn State University

 Mechanics of biological membranes is involved in numerous intriguing biophysical and biological cellular phenomena of different length scales. On the length scale much larger than… (more)

Subjects/Keywords: lipid bilayer; fluid membranes; bending rigidity; coarse-grained; solvent-free; membrane models; molecular dynamics simulations; anisotropic interparticle interaction; liquid crystal

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APA (6th Edition):

Yuan, H. (2010). A SOLVENT-FREE COARSE-GRAINED MODEL FOR BIOLOGICAL AND BIOMIMETIC FLUID MEMBRANES. (Thesis). Penn State University. Retrieved from https://submit-etda.libraries.psu.edu/catalog/11093

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Yuan, Hongyan. “A SOLVENT-FREE COARSE-GRAINED MODEL FOR BIOLOGICAL AND BIOMIMETIC FLUID MEMBRANES.” 2010. Thesis, Penn State University. Accessed January 16, 2021. https://submit-etda.libraries.psu.edu/catalog/11093.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Yuan, Hongyan. “A SOLVENT-FREE COARSE-GRAINED MODEL FOR BIOLOGICAL AND BIOMIMETIC FLUID MEMBRANES.” 2010. Web. 16 Jan 2021.

Vancouver:

Yuan H. A SOLVENT-FREE COARSE-GRAINED MODEL FOR BIOLOGICAL AND BIOMIMETIC FLUID MEMBRANES. [Internet] [Thesis]. Penn State University; 2010. [cited 2021 Jan 16]. Available from: https://submit-etda.libraries.psu.edu/catalog/11093.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Yuan H. A SOLVENT-FREE COARSE-GRAINED MODEL FOR BIOLOGICAL AND BIOMIMETIC FLUID MEMBRANES. [Thesis]. Penn State University; 2010. Available from: https://submit-etda.libraries.psu.edu/catalog/11093

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

14. Schafer, Nicholas Peter. Folding, Binding, Misfolding and Aggregation with AWSEM.

Degree: PhD, Natural Sciences, 2014, Rice University

 This thesis discusses our recent results using the Associative-memory, Water-mediated, Structure and Energy Model (AWSEM), an optimized, coarse-grained molecular dynamics protein folding model, to fold,… (more)

Subjects/Keywords: Protein folding; Coarse-grained models; Optimization; Misfolding; Aggregation; Binding interface prediction; Protein structure prediction

…particularly those interested in using coarse-grained molecular dynamics models that are optimized… …Accurate coarse-grained structure prediction models can be used to investigate a wide range of… …review [39, 40, 41, 42]. In the case of coarse-grained models, the Hamiltonian… …correlation between optimized parameters in a x coarse-grained Hamiltonian and experimental… …review of the results of the AMH/AMC/AMW/AWSEM family of coarse-grained molecular dynamics… 

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APA (6th Edition):

Schafer, N. P. (2014). Folding, Binding, Misfolding and Aggregation with AWSEM. (Doctoral Dissertation). Rice University. Retrieved from http://hdl.handle.net/1911/77518

Chicago Manual of Style (16th Edition):

Schafer, Nicholas Peter. “Folding, Binding, Misfolding and Aggregation with AWSEM.” 2014. Doctoral Dissertation, Rice University. Accessed January 16, 2021. http://hdl.handle.net/1911/77518.

MLA Handbook (7th Edition):

Schafer, Nicholas Peter. “Folding, Binding, Misfolding and Aggregation with AWSEM.” 2014. Web. 16 Jan 2021.

Vancouver:

Schafer NP. Folding, Binding, Misfolding and Aggregation with AWSEM. [Internet] [Doctoral dissertation]. Rice University; 2014. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1911/77518.

Council of Science Editors:

Schafer NP. Folding, Binding, Misfolding and Aggregation with AWSEM. [Doctoral Dissertation]. Rice University; 2014. Available from: http://hdl.handle.net/1911/77518

15. Boz, Mustafa Burak. Modeling and simulations of single stranded rna viruses.

Degree: PhD, Chemistry and Biochemistry, 2012, Georgia Tech

 The presented work is the application of recent methodologies on modeling and simulation of single stranded RNA viruses. We first present the methods of modeling… (more)

Subjects/Keywords: Virus assembly; Coarse-grained models; RNA virus; RNA viruses; RNA; Nucleic acids

…modeling RNA molecules using the coarse-grained modeling package, YUP. Coarse-grained models… …stability and assembly simulations of the whole virus using coarse-grained models. We tested… …proteins from RNA viruses are used to encapsidate a charged cargo using coarse-grained models… …tractability. In these cases, investigators often resort to lower-resolution coarse-grained models… …possible. Therefore, it is necessary to use coarse-grained models. This is not a serious… 

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Boz, M. B. (2012). Modeling and simulations of single stranded rna viruses. (Doctoral Dissertation). Georgia Tech. Retrieved from http://hdl.handle.net/1853/44815

Chicago Manual of Style (16th Edition):

Boz, Mustafa Burak. “Modeling and simulations of single stranded rna viruses.” 2012. Doctoral Dissertation, Georgia Tech. Accessed January 16, 2021. http://hdl.handle.net/1853/44815.

MLA Handbook (7th Edition):

Boz, Mustafa Burak. “Modeling and simulations of single stranded rna viruses.” 2012. Web. 16 Jan 2021.

Vancouver:

Boz MB. Modeling and simulations of single stranded rna viruses. [Internet] [Doctoral dissertation]. Georgia Tech; 2012. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/1853/44815.

Council of Science Editors:

Boz MB. Modeling and simulations of single stranded rna viruses. [Doctoral Dissertation]. Georgia Tech; 2012. Available from: http://hdl.handle.net/1853/44815

16. Cabeza de Vaca López, Israel. Mapping biophysics through enhanced Monte Carlo techniques.

Degree: Departament de Física, 2015, Universitat Politècnica de Catalunya

 Aquesta tesi es centra en l'estudi de les interaccions moleculars amb detall atomic i es divideix en un capítol d'introducció i quatre capítols que fan… (more)

Subjects/Keywords: Monte Carlo; Molecular dynamics; PELE; Induced fit docking; Markov states models; Coarse grained; Protein/DNA-ligand interactions; Intercalators; 53; 577

…induced fit docking, Markov States Models, Coarse grained, Protein/DNA-ligand interactions… …Molecular dynamics MC Monte Carlo CG Coarse grained MSM Markov State Models NA Nucleic… …dynamic level. The range of the coarse-grained models is quite diverse, going from few atoms… …1.3.2 Coarse grained models In molecular simulations, coarse grained (CG) methods… …multiscale approach based on a coarse-grained model and all-atom refinement to generate and score… 

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Cabeza de Vaca López, I. (2015). Mapping biophysics through enhanced Monte Carlo techniques. (Thesis). Universitat Politècnica de Catalunya. Retrieved from http://hdl.handle.net/10803/334172

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Cabeza de Vaca López, Israel. “Mapping biophysics through enhanced Monte Carlo techniques.” 2015. Thesis, Universitat Politècnica de Catalunya. Accessed January 16, 2021. http://hdl.handle.net/10803/334172.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Cabeza de Vaca López, Israel. “Mapping biophysics through enhanced Monte Carlo techniques.” 2015. Web. 16 Jan 2021.

Vancouver:

Cabeza de Vaca López I. Mapping biophysics through enhanced Monte Carlo techniques. [Internet] [Thesis]. Universitat Politècnica de Catalunya; 2015. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/10803/334172.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Cabeza de Vaca López I. Mapping biophysics through enhanced Monte Carlo techniques. [Thesis]. Universitat Politècnica de Catalunya; 2015. Available from: http://hdl.handle.net/10803/334172

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

17. Delort, Bartholomé. Études par dynamique moléculaire de l’interaction de Récepteurs Couplés aux Protéines-G avec leurs partenaires extra et intra-cellulaires : Molecular dynamics studies of the interaction between G-Protein-Coupled Receptors and their extra and intra-cellular partners.

Degree: Docteur es, Ingénierie Biomoléculaire, 2018, Montpellier

Les Récepteurs Couplés aux Protéines-G forment la plus importante famille de protéines membranaires chez l’homme et sont impliqués dans de nombreux processus de signalisation cellulaire.… (more)

Subjects/Keywords: Récepteurs Couplés aux Protéines-G (RCPGs); Dynamique Moléculaire « Replica-Exchange » (REMD); Modèles Gros-Grains (CG); Champ de forces MARTINI ElNeDyn; Liaison et sélectivité de différents peptides; Dimérisation; G-Proteins Coupled Receptors (GPCRs); Replica-Exchange Molecular Dynamics (REMD); Coarse-Grained models (CG); MARTINI ElNeDyn force field; Binding and selectivity of peptides; Dimerization

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Delort, B. (2018). Études par dynamique moléculaire de l’interaction de Récepteurs Couplés aux Protéines-G avec leurs partenaires extra et intra-cellulaires : Molecular dynamics studies of the interaction between G-Protein-Coupled Receptors and their extra and intra-cellular partners. (Doctoral Dissertation). Montpellier. Retrieved from http://www.theses.fr/2018MONTS113

Chicago Manual of Style (16th Edition):

Delort, Bartholomé. “Études par dynamique moléculaire de l’interaction de Récepteurs Couplés aux Protéines-G avec leurs partenaires extra et intra-cellulaires : Molecular dynamics studies of the interaction between G-Protein-Coupled Receptors and their extra and intra-cellular partners.” 2018. Doctoral Dissertation, Montpellier. Accessed January 16, 2021. http://www.theses.fr/2018MONTS113.

MLA Handbook (7th Edition):

Delort, Bartholomé. “Études par dynamique moléculaire de l’interaction de Récepteurs Couplés aux Protéines-G avec leurs partenaires extra et intra-cellulaires : Molecular dynamics studies of the interaction between G-Protein-Coupled Receptors and their extra and intra-cellular partners.” 2018. Web. 16 Jan 2021.

Vancouver:

Delort B. Études par dynamique moléculaire de l’interaction de Récepteurs Couplés aux Protéines-G avec leurs partenaires extra et intra-cellulaires : Molecular dynamics studies of the interaction between G-Protein-Coupled Receptors and their extra and intra-cellular partners. [Internet] [Doctoral dissertation]. Montpellier; 2018. [cited 2021 Jan 16]. Available from: http://www.theses.fr/2018MONTS113.

Council of Science Editors:

Delort B. Études par dynamique moléculaire de l’interaction de Récepteurs Couplés aux Protéines-G avec leurs partenaires extra et intra-cellulaires : Molecular dynamics studies of the interaction between G-Protein-Coupled Receptors and their extra and intra-cellular partners. [Doctoral Dissertation]. Montpellier; 2018. Available from: http://www.theses.fr/2018MONTS113

18. Καραΐσκος, Εμμανουήλ. Μοριακές προσομοιώσεις αγκυρωμένων πολυμερικών αλυσίδων.

Degree: 2005, University of Patras; Πανεπιστήμιο Πατρών

Subjects/Keywords: Αγκυρωμένες πολυμερικές αλυσίδες; Διακλαδισμένες αλυσίδες; Δυδιάσπαρτες αλυσίδες; Υπολογιστική μοντελοποίηση; Μοριακές προσομοιώσεις; Στατιστική θερμοδυναμική; Αδροποιημένα μοντέλα; End - anchored polymers; Branched chains; Bimodal chains; Computer modeling; Configurational bias; Monte carlo simulation; Statistical thermodynamics; Coarse - grained models

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Καραΐσκος, . . (2005). Μοριακές προσομοιώσεις αγκυρωμένων πολυμερικών αλυσίδων. (Thesis). University of Patras; Πανεπιστήμιο Πατρών. Retrieved from http://hdl.handle.net/10442/hedi/26620

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Καραΐσκος, Εμμανουήλ. “Μοριακές προσομοιώσεις αγκυρωμένων πολυμερικών αλυσίδων.” 2005. Thesis, University of Patras; Πανεπιστήμιο Πατρών. Accessed January 16, 2021. http://hdl.handle.net/10442/hedi/26620.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Καραΐσκος, Εμμανουήλ. “Μοριακές προσομοιώσεις αγκυρωμένων πολυμερικών αλυσίδων.” 2005. Web. 16 Jan 2021.

Vancouver:

Καραΐσκος . Μοριακές προσομοιώσεις αγκυρωμένων πολυμερικών αλυσίδων. [Internet] [Thesis]. University of Patras; Πανεπιστήμιο Πατρών; 2005. [cited 2021 Jan 16]. Available from: http://hdl.handle.net/10442/hedi/26620.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Καραΐσκος . Μοριακές προσομοιώσεις αγκυρωμένων πολυμερικών αλυσίδων. [Thesis]. University of Patras; Πανεπιστήμιο Πατρών; 2005. Available from: http://hdl.handle.net/10442/hedi/26620

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

.