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You searched for subject:(Coarse grained model). Showing records 1 – 30 of 33 total matches.

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1. Oliveira, Lariza Laura de. Uso de estratégias baseadas em conhecimento para algoritmos genéticos aplicados à predição de estruturas tridimensionais de proteínas.

Degree: Mestrado, Bioinformática, 2011, University of São Paulo

Proteínas desempenham uma grande variedade de funções biológicas. O conhecimento da estrutura tridimensional proteica pode ajudar no entendimento da função desempenhada. De acordo com a… (more)

Subjects/Keywords: Algoritmos Genéticos; Coarse-Grained Model; Genetic Algorithms; Modelo Coarse-Grained; Predição de Estruturas de Proteínas; Protein Structure Predition

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APA (6th Edition):

Oliveira, L. L. d. (2011). Uso de estratégias baseadas em conhecimento para algoritmos genéticos aplicados à predição de estruturas tridimensionais de proteínas. (Masters Thesis). University of São Paulo. Retrieved from http://www.teses.usp.br/teses/disponiveis/95/95131/tde-26012012-161321/ ;

Chicago Manual of Style (16th Edition):

Oliveira, Lariza Laura de. “Uso de estratégias baseadas em conhecimento para algoritmos genéticos aplicados à predição de estruturas tridimensionais de proteínas.” 2011. Masters Thesis, University of São Paulo. Accessed August 04, 2020. http://www.teses.usp.br/teses/disponiveis/95/95131/tde-26012012-161321/ ;.

MLA Handbook (7th Edition):

Oliveira, Lariza Laura de. “Uso de estratégias baseadas em conhecimento para algoritmos genéticos aplicados à predição de estruturas tridimensionais de proteínas.” 2011. Web. 04 Aug 2020.

Vancouver:

Oliveira LLd. Uso de estratégias baseadas em conhecimento para algoritmos genéticos aplicados à predição de estruturas tridimensionais de proteínas. [Internet] [Masters thesis]. University of São Paulo; 2011. [cited 2020 Aug 04]. Available from: http://www.teses.usp.br/teses/disponiveis/95/95131/tde-26012012-161321/ ;.

Council of Science Editors:

Oliveira LLd. Uso de estratégias baseadas em conhecimento para algoritmos genéticos aplicados à predição de estruturas tridimensionais de proteínas. [Masters Thesis]. University of São Paulo; 2011. Available from: http://www.teses.usp.br/teses/disponiveis/95/95131/tde-26012012-161321/ ;

2. Salahshoor Pirsoltan, Hossein. Nanoscale structure and mechanical properties of a Soft Material.

Degree: MS, 2013, Worcester Polytechnic Institute

 "Recently, hydrogel have found to be promising biomaterials since their porous structure and hydrophilicity enables them to absorb a large amount of water. In this… (more)

Subjects/Keywords: Finite Element Method; Molecular Dynamics; Hydrogel; Soft Material; Coarse-Grained Model

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APA (6th Edition):

Salahshoor Pirsoltan, H. (2013). Nanoscale structure and mechanical properties of a Soft Material. (Thesis). Worcester Polytechnic Institute. Retrieved from etd-080513-133228 ; https://digitalcommons.wpi.edu/etd-theses/924

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Salahshoor Pirsoltan, Hossein. “Nanoscale structure and mechanical properties of a Soft Material.” 2013. Thesis, Worcester Polytechnic Institute. Accessed August 04, 2020. etd-080513-133228 ; https://digitalcommons.wpi.edu/etd-theses/924.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Salahshoor Pirsoltan, Hossein. “Nanoscale structure and mechanical properties of a Soft Material.” 2013. Web. 04 Aug 2020.

Vancouver:

Salahshoor Pirsoltan H. Nanoscale structure and mechanical properties of a Soft Material. [Internet] [Thesis]. Worcester Polytechnic Institute; 2013. [cited 2020 Aug 04]. Available from: etd-080513-133228 ; https://digitalcommons.wpi.edu/etd-theses/924.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Salahshoor Pirsoltan H. Nanoscale structure and mechanical properties of a Soft Material. [Thesis]. Worcester Polytechnic Institute; 2013. Available from: etd-080513-133228 ; https://digitalcommons.wpi.edu/etd-theses/924

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Edinburgh

3. Michaelides, Michalis. Phenomenological modelling : statistical abstraction methods for Markov chains.

Degree: PhD, 2019, University of Edinburgh

 Continuous-time Markov chains have long served as exemplary low-level models for an array of systems, be they natural processes like chemical reactions and population fluctuations… (more)

Subjects/Keywords: Markov Chains; statistical abstraction; coarse grained model; inference

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APA (6th Edition):

Michaelides, M. (2019). Phenomenological modelling : statistical abstraction methods for Markov chains. (Doctoral Dissertation). University of Edinburgh. Retrieved from http://hdl.handle.net/1842/36109

Chicago Manual of Style (16th Edition):

Michaelides, Michalis. “Phenomenological modelling : statistical abstraction methods for Markov chains.” 2019. Doctoral Dissertation, University of Edinburgh. Accessed August 04, 2020. http://hdl.handle.net/1842/36109.

MLA Handbook (7th Edition):

Michaelides, Michalis. “Phenomenological modelling : statistical abstraction methods for Markov chains.” 2019. Web. 04 Aug 2020.

Vancouver:

Michaelides M. Phenomenological modelling : statistical abstraction methods for Markov chains. [Internet] [Doctoral dissertation]. University of Edinburgh; 2019. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/1842/36109.

Council of Science Editors:

Michaelides M. Phenomenological modelling : statistical abstraction methods for Markov chains. [Doctoral Dissertation]. University of Edinburgh; 2019. Available from: http://hdl.handle.net/1842/36109


Penn State University

4. Kumar, Sushant. Molecular principles of folding upon binding processes in disordered proteins: a computational case study.

Degree: PhD, Integrative Biosciences, 2013, Penn State University

 Proteins are dynamic biomolecules which undergo structural fluctuations to adopt multiple conformations while performing important biological functions, such as catalysis and cell regulation. A wide… (more)

Subjects/Keywords: IDPs; Coupled folding-binding; FCP1-Rap74; Structure-based model; Coarse-grained simulations

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APA (6th Edition):

Kumar, S. (2013). Molecular principles of folding upon binding processes in disordered proteins: a computational case study. (Doctoral Dissertation). Penn State University. Retrieved from https://etda.libraries.psu.edu/catalog/19811

Chicago Manual of Style (16th Edition):

Kumar, Sushant. “Molecular principles of folding upon binding processes in disordered proteins: a computational case study.” 2013. Doctoral Dissertation, Penn State University. Accessed August 04, 2020. https://etda.libraries.psu.edu/catalog/19811.

MLA Handbook (7th Edition):

Kumar, Sushant. “Molecular principles of folding upon binding processes in disordered proteins: a computational case study.” 2013. Web. 04 Aug 2020.

Vancouver:

Kumar S. Molecular principles of folding upon binding processes in disordered proteins: a computational case study. [Internet] [Doctoral dissertation]. Penn State University; 2013. [cited 2020 Aug 04]. Available from: https://etda.libraries.psu.edu/catalog/19811.

Council of Science Editors:

Kumar S. Molecular principles of folding upon binding processes in disordered proteins: a computational case study. [Doctoral Dissertation]. Penn State University; 2013. Available from: https://etda.libraries.psu.edu/catalog/19811


University of California – Berkeley

5. Varilly, Patrick Stephen. Fluctuations in Water and their Relation to the Hydrophobic Effect.

Degree: Physics, 2011, University of California – Berkeley

 The hydrophobic effect, or the tendency for oil and water not to mix, is a fundamental force that strongly influences the shape, behavior and assembly… (more)

Subjects/Keywords: Condensed matter physics; Physical chemistry; Biophysics; coarse-grained model; evaporation; hydrophobicity; molecular dynamics; solvation; water

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APA (6th Edition):

Varilly, P. S. (2011). Fluctuations in Water and their Relation to the Hydrophobic Effect. (Thesis). University of California – Berkeley. Retrieved from http://www.escholarship.org/uc/item/37h7b6n5

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Varilly, Patrick Stephen. “Fluctuations in Water and their Relation to the Hydrophobic Effect.” 2011. Thesis, University of California – Berkeley. Accessed August 04, 2020. http://www.escholarship.org/uc/item/37h7b6n5.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Varilly, Patrick Stephen. “Fluctuations in Water and their Relation to the Hydrophobic Effect.” 2011. Web. 04 Aug 2020.

Vancouver:

Varilly PS. Fluctuations in Water and their Relation to the Hydrophobic Effect. [Internet] [Thesis]. University of California – Berkeley; 2011. [cited 2020 Aug 04]. Available from: http://www.escholarship.org/uc/item/37h7b6n5.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Varilly PS. Fluctuations in Water and their Relation to the Hydrophobic Effect. [Thesis]. University of California – Berkeley; 2011. Available from: http://www.escholarship.org/uc/item/37h7b6n5

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Vanderbilt University

6. Mukherjee, Siladitya. Calculation of the vapor-liquid coexistence of polymer-grafted nanoparticles.

Degree: MS, Chemical Engineering, 2013, Vanderbilt University

 In this work, molecular simulations are used to calculate the vapor-liquid equilibrium (VLE) of polymer-grafted nanoparticles under a wide range of conditions, with the main… (more)

Subjects/Keywords: Coarse-Grained Model; Vapor-Liquid Coexistence; Polymer; Tethered Nanoparticle; Molecular Dynamics; Brownian Dynamics

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APA (6th Edition):

Mukherjee, S. (2013). Calculation of the vapor-liquid coexistence of polymer-grafted nanoparticles. (Masters Thesis). Vanderbilt University. Retrieved from http://etd.library.vanderbilt.edu/available/etd-03202013-135401/ ;

Chicago Manual of Style (16th Edition):

Mukherjee, Siladitya. “Calculation of the vapor-liquid coexistence of polymer-grafted nanoparticles.” 2013. Masters Thesis, Vanderbilt University. Accessed August 04, 2020. http://etd.library.vanderbilt.edu/available/etd-03202013-135401/ ;.

MLA Handbook (7th Edition):

Mukherjee, Siladitya. “Calculation of the vapor-liquid coexistence of polymer-grafted nanoparticles.” 2013. Web. 04 Aug 2020.

Vancouver:

Mukherjee S. Calculation of the vapor-liquid coexistence of polymer-grafted nanoparticles. [Internet] [Masters thesis]. Vanderbilt University; 2013. [cited 2020 Aug 04]. Available from: http://etd.library.vanderbilt.edu/available/etd-03202013-135401/ ;.

Council of Science Editors:

Mukherjee S. Calculation of the vapor-liquid coexistence of polymer-grafted nanoparticles. [Masters Thesis]. Vanderbilt University; 2013. Available from: http://etd.library.vanderbilt.edu/available/etd-03202013-135401/ ;


University of Akron

7. Almutairi, Amani. Investigation of sexithiophene properties with Monte Carlo simulations of a coarse-grained model.

Degree: MS, Physics, 2016, University of Akron

 Thiophenes have important applications in organic electronics, energy conversion, and storage. Oligothiophenes are small, ¿-conjugated mole-cules that are used in applications and also serve as… (more)

Subjects/Keywords: Physics; sexithiophene; Gay-Berne potential; liquid crystal; structure; coarse-grained model; Monte Carlo simulations

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APA (6th Edition):

Almutairi, A. (2016). Investigation of sexithiophene properties with Monte Carlo simulations of a coarse-grained model. (Masters Thesis). University of Akron. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=akron1481301927214166

Chicago Manual of Style (16th Edition):

Almutairi, Amani. “Investigation of sexithiophene properties with Monte Carlo simulations of a coarse-grained model.” 2016. Masters Thesis, University of Akron. Accessed August 04, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=akron1481301927214166.

MLA Handbook (7th Edition):

Almutairi, Amani. “Investigation of sexithiophene properties with Monte Carlo simulations of a coarse-grained model.” 2016. Web. 04 Aug 2020.

Vancouver:

Almutairi A. Investigation of sexithiophene properties with Monte Carlo simulations of a coarse-grained model. [Internet] [Masters thesis]. University of Akron; 2016. [cited 2020 Aug 04]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron1481301927214166.

Council of Science Editors:

Almutairi A. Investigation of sexithiophene properties with Monte Carlo simulations of a coarse-grained model. [Masters Thesis]. University of Akron; 2016. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron1481301927214166


Cornell University

8. Sun, Yangyang. MOLECULAR DYNAMICS SIMULATION OF THE MESOPHASE BEHAVIOR OF THERMOTROPIC BOLAAMPHIPHILES WITH A SWALLOW-TAIL LATERAL CHAIN .

Degree: 2017, Cornell University

 Recent experimental studies have shown that T-shaped bolaamphiphiles (TBA) with a swallow-tail lateral chain display several thermotropic liquid crystalline phases depending on the size of… (more)

Subjects/Keywords: Chemical engineering; Molecular Dynamics; Bolaamphiphiles; Coarse-grained model; Mesophase behavior; Thermotropic liquid crystals

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APA (6th Edition):

Sun, Y. (2017). MOLECULAR DYNAMICS SIMULATION OF THE MESOPHASE BEHAVIOR OF THERMOTROPIC BOLAAMPHIPHILES WITH A SWALLOW-TAIL LATERAL CHAIN . (Thesis). Cornell University. Retrieved from http://hdl.handle.net/1813/56884

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Sun, Yangyang. “MOLECULAR DYNAMICS SIMULATION OF THE MESOPHASE BEHAVIOR OF THERMOTROPIC BOLAAMPHIPHILES WITH A SWALLOW-TAIL LATERAL CHAIN .” 2017. Thesis, Cornell University. Accessed August 04, 2020. http://hdl.handle.net/1813/56884.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Sun, Yangyang. “MOLECULAR DYNAMICS SIMULATION OF THE MESOPHASE BEHAVIOR OF THERMOTROPIC BOLAAMPHIPHILES WITH A SWALLOW-TAIL LATERAL CHAIN .” 2017. Web. 04 Aug 2020.

Vancouver:

Sun Y. MOLECULAR DYNAMICS SIMULATION OF THE MESOPHASE BEHAVIOR OF THERMOTROPIC BOLAAMPHIPHILES WITH A SWALLOW-TAIL LATERAL CHAIN . [Internet] [Thesis]. Cornell University; 2017. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/1813/56884.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Sun Y. MOLECULAR DYNAMICS SIMULATION OF THE MESOPHASE BEHAVIOR OF THERMOTROPIC BOLAAMPHIPHILES WITH A SWALLOW-TAIL LATERAL CHAIN . [Thesis]. Cornell University; 2017. Available from: http://hdl.handle.net/1813/56884

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Southern California

9. Rychkova, Anna. Exploring the nature of the translocon-assisted protein insertion.

Degree: PhD, Chemistry, 2013, University of Southern California

 The main subject of the current dissertation is related to the fundamental question of membrane protein folding. Membrane proteins represent an important class of proteins… (more)

Subjects/Keywords: apparent free energy; coarse grained model; membrane proteins; signal peptide; topology; translocon

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APA (6th Edition):

Rychkova, A. (2013). Exploring the nature of the translocon-assisted protein insertion. (Doctoral Dissertation). University of Southern California. Retrieved from http://digitallibrary.usc.edu/cdm/compoundobject/collection/p15799coll3/id/297485/rec/2672

Chicago Manual of Style (16th Edition):

Rychkova, Anna. “Exploring the nature of the translocon-assisted protein insertion.” 2013. Doctoral Dissertation, University of Southern California. Accessed August 04, 2020. http://digitallibrary.usc.edu/cdm/compoundobject/collection/p15799coll3/id/297485/rec/2672.

MLA Handbook (7th Edition):

Rychkova, Anna. “Exploring the nature of the translocon-assisted protein insertion.” 2013. Web. 04 Aug 2020.

Vancouver:

Rychkova A. Exploring the nature of the translocon-assisted protein insertion. [Internet] [Doctoral dissertation]. University of Southern California; 2013. [cited 2020 Aug 04]. Available from: http://digitallibrary.usc.edu/cdm/compoundobject/collection/p15799coll3/id/297485/rec/2672.

Council of Science Editors:

Rychkova A. Exploring the nature of the translocon-assisted protein insertion. [Doctoral Dissertation]. University of Southern California; 2013. Available from: http://digitallibrary.usc.edu/cdm/compoundobject/collection/p15799coll3/id/297485/rec/2672


Georgia Tech

10. Yoo, Hanjong. Multi-scale modeling of poly(3-hexylthiophene) and [6,6]-phenyl-c61-butyric acid methyl ester using coarse grained force field derived from DFT based atomistic force field.

Degree: MS, Materials Science and Engineering, 2015, Georgia Tech

 The power conversion efficiencies for the organic photovoltaic cells containing active layers of electron donors and acceptors are dependent of three morphological properties, namely the… (more)

Subjects/Keywords: Organic photovoltaics; Polymer; Organic materials; Molecular dynamics simulation; Force field; Coarse-grained model

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APA (6th Edition):

Yoo, H. (2015). Multi-scale modeling of poly(3-hexylthiophene) and [6,6]-phenyl-c61-butyric acid methyl ester using coarse grained force field derived from DFT based atomistic force field. (Masters Thesis). Georgia Tech. Retrieved from http://hdl.handle.net/1853/56226

Chicago Manual of Style (16th Edition):

Yoo, Hanjong. “Multi-scale modeling of poly(3-hexylthiophene) and [6,6]-phenyl-c61-butyric acid methyl ester using coarse grained force field derived from DFT based atomistic force field.” 2015. Masters Thesis, Georgia Tech. Accessed August 04, 2020. http://hdl.handle.net/1853/56226.

MLA Handbook (7th Edition):

Yoo, Hanjong. “Multi-scale modeling of poly(3-hexylthiophene) and [6,6]-phenyl-c61-butyric acid methyl ester using coarse grained force field derived from DFT based atomistic force field.” 2015. Web. 04 Aug 2020.

Vancouver:

Yoo H. Multi-scale modeling of poly(3-hexylthiophene) and [6,6]-phenyl-c61-butyric acid methyl ester using coarse grained force field derived from DFT based atomistic force field. [Internet] [Masters thesis]. Georgia Tech; 2015. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/1853/56226.

Council of Science Editors:

Yoo H. Multi-scale modeling of poly(3-hexylthiophene) and [6,6]-phenyl-c61-butyric acid methyl ester using coarse grained force field derived from DFT based atomistic force field. [Masters Thesis]. Georgia Tech; 2015. Available from: http://hdl.handle.net/1853/56226


University of Plymouth

11. Jamal, Mohamad Hidayat. Modelling coarse-grained beach profile evolution.

Degree: PhD, 2011, University of Plymouth

Coarse-grained beaches are particularly prevalent in the UK, composed of accumulations of either gravel, or mixed sand and gravel sediments. The aim of the work… (more)

Subjects/Keywords: 627; Coarse-grained beach, gravel beach, mixed beach, sediment transport, shallow water equation, infiltration, numerical model, XBeach

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APA (6th Edition):

Jamal, M. H. (2011). Modelling coarse-grained beach profile evolution. (Doctoral Dissertation). University of Plymouth. Retrieved from http://hdl.handle.net/10026.1/545

Chicago Manual of Style (16th Edition):

Jamal, Mohamad Hidayat. “Modelling coarse-grained beach profile evolution.” 2011. Doctoral Dissertation, University of Plymouth. Accessed August 04, 2020. http://hdl.handle.net/10026.1/545.

MLA Handbook (7th Edition):

Jamal, Mohamad Hidayat. “Modelling coarse-grained beach profile evolution.” 2011. Web. 04 Aug 2020.

Vancouver:

Jamal MH. Modelling coarse-grained beach profile evolution. [Internet] [Doctoral dissertation]. University of Plymouth; 2011. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/10026.1/545.

Council of Science Editors:

Jamal MH. Modelling coarse-grained beach profile evolution. [Doctoral Dissertation]. University of Plymouth; 2011. Available from: http://hdl.handle.net/10026.1/545


University of Akron

12. Murrow, Matthew Alan. Kinesin model for Brownian dynamics simulations of stepping efficiency.

Degree: MS, Physics, 2019, University of Akron

 Motor proteins are molecular motors capable of active movement within cells. The motor protein kinesin plays an integral role in cell function, transporting, for example,… (more)

Subjects/Keywords: Biophysics; Physics; Theoretical Physics; Molecular Biology; kinesin; neck linker; molecular motor; Brownian dynamics; efficiency; coarse grained model; computer simulations

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APA (6th Edition):

Murrow, M. A. (2019). Kinesin model for Brownian dynamics simulations of stepping efficiency. (Masters Thesis). University of Akron. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=akron156441669721832

Chicago Manual of Style (16th Edition):

Murrow, Matthew Alan. “Kinesin model for Brownian dynamics simulations of stepping efficiency.” 2019. Masters Thesis, University of Akron. Accessed August 04, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=akron156441669721832.

MLA Handbook (7th Edition):

Murrow, Matthew Alan. “Kinesin model for Brownian dynamics simulations of stepping efficiency.” 2019. Web. 04 Aug 2020.

Vancouver:

Murrow MA. Kinesin model for Brownian dynamics simulations of stepping efficiency. [Internet] [Masters thesis]. University of Akron; 2019. [cited 2020 Aug 04]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron156441669721832.

Council of Science Editors:

Murrow MA. Kinesin model for Brownian dynamics simulations of stepping efficiency. [Masters Thesis]. University of Akron; 2019. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron156441669721832


University of Michigan

13. Wang, Yanming. Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions.

Degree: PhD, Chemistry, 2019, University of Michigan

 Almost all biological functions rely on the dynamics of proteins. Protein folding and protein-protein interactions are the two most fundamental problems of protein dynamics. Molecular… (more)

Subjects/Keywords: protein folding; protein-protein interactions; coarse-grained model; molecular dynamics simulation; Biological Chemistry; Chemistry; Molecular, Cellular and Developmental Biology; Science

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APA (6th Edition):

Wang, Y. (2019). Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions. (Doctoral Dissertation). University of Michigan. Retrieved from http://hdl.handle.net/2027.42/155119

Chicago Manual of Style (16th Edition):

Wang, Yanming. “Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions.” 2019. Doctoral Dissertation, University of Michigan. Accessed August 04, 2020. http://hdl.handle.net/2027.42/155119.

MLA Handbook (7th Edition):

Wang, Yanming. “Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions.” 2019. Web. 04 Aug 2020.

Vancouver:

Wang Y. Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions. [Internet] [Doctoral dissertation]. University of Michigan; 2019. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/2027.42/155119.

Council of Science Editors:

Wang Y. Advances in Coarse-grained Models for Protein Folding and Protein-protein Interactions. [Doctoral Dissertation]. University of Michigan; 2019. Available from: http://hdl.handle.net/2027.42/155119


University of Iowa

14. Li, Shuxiang. Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model.

Degree: PhD, Biochemistry, 2017, University of Iowa

  Computer simulations provide a potentially powerful complement to conventional experimental techniques in elucidating the structures, dynamics and interactions of macromolecules. In this thesis, I… (more)

Subjects/Keywords: Chromosome model; Coarse-grained models; DNA supercoiling; Intrinsic conformational preference; Molecular dynamics simulation; Neighboring residue effects; Biochemistry

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APA (6th Edition):

Li, S. (2017). Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model. (Doctoral Dissertation). University of Iowa. Retrieved from https://ir.uiowa.edu/etd/5960

Chicago Manual of Style (16th Edition):

Li, Shuxiang. “Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model.” 2017. Doctoral Dissertation, University of Iowa. Accessed August 04, 2020. https://ir.uiowa.edu/etd/5960.

MLA Handbook (7th Edition):

Li, Shuxiang. “Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model.” 2017. Web. 04 Aug 2020.

Vancouver:

Li S. Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model. [Internet] [Doctoral dissertation]. University of Iowa; 2017. [cited 2020 Aug 04]. Available from: https://ir.uiowa.edu/etd/5960.

Council of Science Editors:

Li S. Computer simulations exploring conformational preferences of short peptides and developing a bacterial chromosome model. [Doctoral Dissertation]. University of Iowa; 2017. Available from: https://ir.uiowa.edu/etd/5960


Brno University of Technology

15. Tuleja, Martin. Genetické algoritmy – implementace paralelního zpracování: Genetic Algorithms - Implementation of Multiprocessing.

Degree: 2019, Brno University of Technology

 Genetic algorithms are modern algorithms intended to solve optimization problems. Inspiration originates in evolutionary principles in nature. Parallelization of genetic algorithms provides not only faster… (more)

Subjects/Keywords: AMQP; Celery; genetický algoritmus; hierarchický model; hrubozrnný model; jemnozrnný model; master-slave model; paralelizácia; Python; RabbitMQ; SCOOP; AMQP; Celery; coarse-grained model; fine-grained model; genetic algorithm; hierarchical model; master-slave model; parallelization; Python; RabbitMQ; SCOOP

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Tuleja, M. (2019). Genetické algoritmy – implementace paralelního zpracování: Genetic Algorithms - Implementation of Multiprocessing. (Thesis). Brno University of Technology. Retrieved from http://hdl.handle.net/11012/80932

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Tuleja, Martin. “Genetické algoritmy – implementace paralelního zpracování: Genetic Algorithms - Implementation of Multiprocessing.” 2019. Thesis, Brno University of Technology. Accessed August 04, 2020. http://hdl.handle.net/11012/80932.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Tuleja, Martin. “Genetické algoritmy – implementace paralelního zpracování: Genetic Algorithms - Implementation of Multiprocessing.” 2019. Web. 04 Aug 2020.

Vancouver:

Tuleja M. Genetické algoritmy – implementace paralelního zpracování: Genetic Algorithms - Implementation of Multiprocessing. [Internet] [Thesis]. Brno University of Technology; 2019. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/11012/80932.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Tuleja M. Genetické algoritmy – implementace paralelního zpracování: Genetic Algorithms - Implementation of Multiprocessing. [Thesis]. Brno University of Technology; 2019. Available from: http://hdl.handle.net/11012/80932

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

16. Marmaduke, Andrew Robert. A Simple Coarse-Grained Model of a Carbon Nanotube Forest Interacting with a Rigid Substrate.

Degree: MS, Applied Mathematics, 2015, University of Akron

 Carbon nanotubes (CNTs) exhibit exceptional thermal, mechanical, and electronic properties and hence are of interest for potential applications in novel materials and devices. To develop… (more)

Subjects/Keywords: Applied Mathematics; coarse-grained; model; coarse-grained model; adhesion; cnt; carbon; nanotube; carbon nanotube

model a CNT with a coarse-grained approach. (a) A CNT under torsional strain can be… …There are several ways to model a CNT with a coarse-grained approach. (a) A CNT… …coarse-grained model with an axial, bending, and short-range weak interaction energies. We also… …fibers and both substrates. In Chapter 2, we formulate a coarse-grained model of the fibers… …scales coarse-grained approaches are used. The exact time and length scales that are… 

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Marmaduke, A. R. (2015). A Simple Coarse-Grained Model of a Carbon Nanotube Forest Interacting with a Rigid Substrate. (Masters Thesis). University of Akron. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=akron1430418484

Chicago Manual of Style (16th Edition):

Marmaduke, Andrew Robert. “A Simple Coarse-Grained Model of a Carbon Nanotube Forest Interacting with a Rigid Substrate.” 2015. Masters Thesis, University of Akron. Accessed August 04, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=akron1430418484.

MLA Handbook (7th Edition):

Marmaduke, Andrew Robert. “A Simple Coarse-Grained Model of a Carbon Nanotube Forest Interacting with a Rigid Substrate.” 2015. Web. 04 Aug 2020.

Vancouver:

Marmaduke AR. A Simple Coarse-Grained Model of a Carbon Nanotube Forest Interacting with a Rigid Substrate. [Internet] [Masters thesis]. University of Akron; 2015. [cited 2020 Aug 04]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron1430418484.

Council of Science Editors:

Marmaduke AR. A Simple Coarse-Grained Model of a Carbon Nanotube Forest Interacting with a Rigid Substrate. [Masters Thesis]. University of Akron; 2015. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron1430418484


University of Texas – Austin

17. -7115-3061. Modeling RNA, protein, and synthetic molecules using coarse-grained and all-atom representations.

Degree: PhD, Biomedical Engineering, 2016, University of Texas – Austin

 The aim of computational chemistry is to depict and understand the dynamics and interactions of molecular systems. In addition to increased comprehension in the physical… (more)

Subjects/Keywords: RNA structure; Coarse-grained model; RNA 3-D structure; RACER RNA model; Cucurbituril modeling; CdSe quantum dots; RNA free energy modeling; RNA physics based model

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APA (6th Edition):

-7115-3061. (2016). Modeling RNA, protein, and synthetic molecules using coarse-grained and all-atom representations. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/72699

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Chicago Manual of Style (16th Edition):

-7115-3061. “Modeling RNA, protein, and synthetic molecules using coarse-grained and all-atom representations.” 2016. Doctoral Dissertation, University of Texas – Austin. Accessed August 04, 2020. http://hdl.handle.net/2152/72699.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

MLA Handbook (7th Edition):

-7115-3061. “Modeling RNA, protein, and synthetic molecules using coarse-grained and all-atom representations.” 2016. Web. 04 Aug 2020.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Vancouver:

-7115-3061. Modeling RNA, protein, and synthetic molecules using coarse-grained and all-atom representations. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2016. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/2152/72699.

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete

Council of Science Editors:

-7115-3061. Modeling RNA, protein, and synthetic molecules using coarse-grained and all-atom representations. [Doctoral Dissertation]. University of Texas – Austin; 2016. Available from: http://hdl.handle.net/2152/72699

Note: this citation may be lacking information needed for this citation format:
Author name may be incomplete


Pontifical Catholic University of Rio de Janeiro

18. EVELINA DUNESKA ESTRADA LOPEZ. [en] MOLECULAR DYNAMICS OF PREDNISOLONE ADSORPTION ON A LUNG SURFACTANT MODEL.

Degree: 2018, Pontifical Catholic University of Rio de Janeiro

[pt] A simulação da adsorção da prednisolona em um modelo de surfactante pulmonar foi realizada com sucesso usando dinâmica molecular coarse grained a uma temperatura… (more)

Subjects/Keywords: [pt] ESPALHAMENTO; [en] SCATTERING; [pt] COLAPSO; [en] COLLAPSE; [pt] PREDNISOLONA; [en] PREDNISOLONE; [pt] DINAMICA MOLECULAR; [en] MOLECULAR DYNAMICS; [pt] SURFACTANTE PULMONAR; [en] LUNG SURFACTANT; [pt] MONOCAMADA FOSFOLIPIDICA; [en] PHOSPHOLIPID MONOLAYER; [pt] MODELO COARSE GRAINED; [en] COARSE GRAINED MODEL

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APA (6th Edition):

LOPEZ, E. D. E. (2018). [en] MOLECULAR DYNAMICS OF PREDNISOLONE ADSORPTION ON A LUNG SURFACTANT MODEL. (Thesis). Pontifical Catholic University of Rio de Janeiro. Retrieved from http://www.maxwell.vrac.puc-rio.br/Busca_etds.php?strSecao=resultado&nrSeq=34024

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

LOPEZ, EVELINA DUNESKA ESTRADA. “[en] MOLECULAR DYNAMICS OF PREDNISOLONE ADSORPTION ON A LUNG SURFACTANT MODEL.” 2018. Thesis, Pontifical Catholic University of Rio de Janeiro. Accessed August 04, 2020. http://www.maxwell.vrac.puc-rio.br/Busca_etds.php?strSecao=resultado&nrSeq=34024.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

LOPEZ, EVELINA DUNESKA ESTRADA. “[en] MOLECULAR DYNAMICS OF PREDNISOLONE ADSORPTION ON A LUNG SURFACTANT MODEL.” 2018. Web. 04 Aug 2020.

Vancouver:

LOPEZ EDE. [en] MOLECULAR DYNAMICS OF PREDNISOLONE ADSORPTION ON A LUNG SURFACTANT MODEL. [Internet] [Thesis]. Pontifical Catholic University of Rio de Janeiro; 2018. [cited 2020 Aug 04]. Available from: http://www.maxwell.vrac.puc-rio.br/Busca_etds.php?strSecao=resultado&nrSeq=34024.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

LOPEZ EDE. [en] MOLECULAR DYNAMICS OF PREDNISOLONE ADSORPTION ON A LUNG SURFACTANT MODEL. [Thesis]. Pontifical Catholic University of Rio de Janeiro; 2018. Available from: http://www.maxwell.vrac.puc-rio.br/Busca_etds.php?strSecao=resultado&nrSeq=34024

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Virginia Tech

19. Santacruz Reyes, Karla. Geosynthetic Reinforced Soil: Numerical and Mathematical Analysis of Laboratory Triaxial  Compression Tests.

Degree: PhD, Civil and Environmental Engineering, 2017, Virginia Tech

 Geosynthetic reinforced soil (GRS) is a soil improvement technology in which closely spaced horizontal layers of geosynthetic are embedded in a soil mass to provide… (more)

Subjects/Keywords: geosynthetic reinforced soil; three-dimensional numerical analyses; constitutive model for dense coarse-grained soil; constitutive model for geosynthetic and interfaces with soil; numerical and mathematical analyses of GRS triaxial tests

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APA (6th Edition):

Santacruz Reyes, K. (2017). Geosynthetic Reinforced Soil: Numerical and Mathematical Analysis of Laboratory Triaxial  Compression Tests. (Doctoral Dissertation). Virginia Tech. Retrieved from http://hdl.handle.net/10919/84428

Chicago Manual of Style (16th Edition):

Santacruz Reyes, Karla. “Geosynthetic Reinforced Soil: Numerical and Mathematical Analysis of Laboratory Triaxial  Compression Tests.” 2017. Doctoral Dissertation, Virginia Tech. Accessed August 04, 2020. http://hdl.handle.net/10919/84428.

MLA Handbook (7th Edition):

Santacruz Reyes, Karla. “Geosynthetic Reinforced Soil: Numerical and Mathematical Analysis of Laboratory Triaxial  Compression Tests.” 2017. Web. 04 Aug 2020.

Vancouver:

Santacruz Reyes K. Geosynthetic Reinforced Soil: Numerical and Mathematical Analysis of Laboratory Triaxial  Compression Tests. [Internet] [Doctoral dissertation]. Virginia Tech; 2017. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/10919/84428.

Council of Science Editors:

Santacruz Reyes K. Geosynthetic Reinforced Soil: Numerical and Mathematical Analysis of Laboratory Triaxial  Compression Tests. [Doctoral Dissertation]. Virginia Tech; 2017. Available from: http://hdl.handle.net/10919/84428

20. CHENG YUAN. Computational Techniques for Simulating the Interactions between Peptides and Carbon Nanotubes.

Degree: 2008, National University of Singapore

Subjects/Keywords: peptides; carbon nanotubes (CNTs); atomic model; coarse-grained model; thermodynamics

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APA (6th Edition):

YUAN, C. (2008). Computational Techniques for Simulating the Interactions between Peptides and Carbon Nanotubes. (Thesis). National University of Singapore. Retrieved from http://scholarbank.nus.edu.sg/handle/10635/13052

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

YUAN, CHENG. “Computational Techniques for Simulating the Interactions between Peptides and Carbon Nanotubes.” 2008. Thesis, National University of Singapore. Accessed August 04, 2020. http://scholarbank.nus.edu.sg/handle/10635/13052.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

YUAN, CHENG. “Computational Techniques for Simulating the Interactions between Peptides and Carbon Nanotubes.” 2008. Web. 04 Aug 2020.

Vancouver:

YUAN C. Computational Techniques for Simulating the Interactions between Peptides and Carbon Nanotubes. [Internet] [Thesis]. National University of Singapore; 2008. [cited 2020 Aug 04]. Available from: http://scholarbank.nus.edu.sg/handle/10635/13052.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

YUAN C. Computational Techniques for Simulating the Interactions between Peptides and Carbon Nanotubes. [Thesis]. National University of Singapore; 2008. Available from: http://scholarbank.nus.edu.sg/handle/10635/13052

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

21. Cipcigan, Flaviu Serban. Electronically coarse grained molecular model of water.

Degree: PhD, 2017, University of Edinburgh

 Electronic coarse graining is a technique improving the predictive power of molecular dynamics simulations by representing electrons via a quantum harmonic oscillator. This construction, known… (more)

Subjects/Keywords: transferable water model; coarse grained model; supercooled water; supercritical water; ice II; hydrogen bonding; liquid-vapour interface; molecular dynamics; water; path integral

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APA (6th Edition):

Cipcigan, F. S. (2017). Electronically coarse grained molecular model of water. (Doctoral Dissertation). University of Edinburgh. Retrieved from http://hdl.handle.net/1842/28814

Chicago Manual of Style (16th Edition):

Cipcigan, Flaviu Serban. “Electronically coarse grained molecular model of water.” 2017. Doctoral Dissertation, University of Edinburgh. Accessed August 04, 2020. http://hdl.handle.net/1842/28814.

MLA Handbook (7th Edition):

Cipcigan, Flaviu Serban. “Electronically coarse grained molecular model of water.” 2017. Web. 04 Aug 2020.

Vancouver:

Cipcigan FS. Electronically coarse grained molecular model of water. [Internet] [Doctoral dissertation]. University of Edinburgh; 2017. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/1842/28814.

Council of Science Editors:

Cipcigan FS. Electronically coarse grained molecular model of water. [Doctoral Dissertation]. University of Edinburgh; 2017. Available from: http://hdl.handle.net/1842/28814


University of Oulu

22. Xin, W. (Weidong). Continuum electrostatics of biomolecular systems.

Degree: 2008, University of Oulu

 Abstract Electrostatic interactions are very important in biomolecular systems. Electrostatic forces have received a great deal of attention due to their long-range nature and the… (more)

Subjects/Keywords: boundary element method; coarse-grained model; computer simulation; electrostatics; explicit ions; ionic strength; long-range interaction; potential of mean force; protein; solvation free energy

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6th Edition):

Xin, W. (. (2008). Continuum electrostatics of biomolecular systems. (Doctoral Dissertation). University of Oulu. Retrieved from http://urn.fi/urn:isbn:9789514287602

Chicago Manual of Style (16th Edition):

Xin, W (Weidong). “Continuum electrostatics of biomolecular systems.” 2008. Doctoral Dissertation, University of Oulu. Accessed August 04, 2020. http://urn.fi/urn:isbn:9789514287602.

MLA Handbook (7th Edition):

Xin, W (Weidong). “Continuum electrostatics of biomolecular systems.” 2008. Web. 04 Aug 2020.

Vancouver:

Xin W(. Continuum electrostatics of biomolecular systems. [Internet] [Doctoral dissertation]. University of Oulu; 2008. [cited 2020 Aug 04]. Available from: http://urn.fi/urn:isbn:9789514287602.

Council of Science Editors:

Xin W(. Continuum electrostatics of biomolecular systems. [Doctoral Dissertation]. University of Oulu; 2008. Available from: http://urn.fi/urn:isbn:9789514287602

23. Hadriche, Abir. Caractérisation du répertoire dynamique macroscopique de l'activité électrique cérébrale humaine au repos : Analyse of the potential of MafB/c-Maf double deficient macrophages as cellular therapeutic agent.

Degree: Docteur es, Neurosciences, 2013, Aix-Marseille; École nationale d'Ingénieurs de Sfax (Tunisie)

Nous proposons un algorithme basé sur une approche orientée d'ensemble de système dynamique pour extraire une organisation grossière de l'espace d'état de cerveau sur la… (more)

Subjects/Keywords: EEG; État de repos; Processus de Markov; Partition; Modèle neuronal; Automate binaire discret; EEG; Resting state; Markov process; Partition; Coarse grained; Neuronal model; Discret automata; 616.8

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APA (6th Edition):

Hadriche, A. (2013). Caractérisation du répertoire dynamique macroscopique de l'activité électrique cérébrale humaine au repos : Analyse of the potential of MafB/c-Maf double deficient macrophages as cellular therapeutic agent. (Doctoral Dissertation). Aix-Marseille; École nationale d'Ingénieurs de Sfax (Tunisie). Retrieved from http://www.theses.fr/2013AIXM4724

Chicago Manual of Style (16th Edition):

Hadriche, Abir. “Caractérisation du répertoire dynamique macroscopique de l'activité électrique cérébrale humaine au repos : Analyse of the potential of MafB/c-Maf double deficient macrophages as cellular therapeutic agent.” 2013. Doctoral Dissertation, Aix-Marseille; École nationale d'Ingénieurs de Sfax (Tunisie). Accessed August 04, 2020. http://www.theses.fr/2013AIXM4724.

MLA Handbook (7th Edition):

Hadriche, Abir. “Caractérisation du répertoire dynamique macroscopique de l'activité électrique cérébrale humaine au repos : Analyse of the potential of MafB/c-Maf double deficient macrophages as cellular therapeutic agent.” 2013. Web. 04 Aug 2020.

Vancouver:

Hadriche A. Caractérisation du répertoire dynamique macroscopique de l'activité électrique cérébrale humaine au repos : Analyse of the potential of MafB/c-Maf double deficient macrophages as cellular therapeutic agent. [Internet] [Doctoral dissertation]. Aix-Marseille; École nationale d'Ingénieurs de Sfax (Tunisie); 2013. [cited 2020 Aug 04]. Available from: http://www.theses.fr/2013AIXM4724.

Council of Science Editors:

Hadriche A. Caractérisation du répertoire dynamique macroscopique de l'activité électrique cérébrale humaine au repos : Analyse of the potential of MafB/c-Maf double deficient macrophages as cellular therapeutic agent. [Doctoral Dissertation]. Aix-Marseille; École nationale d'Ingénieurs de Sfax (Tunisie); 2013. Available from: http://www.theses.fr/2013AIXM4724

24. Nourbakhsh, Shokoofeh. Biophysical Modelling of Antimicrobial Peptide’s Interactions with Phospholipid and Lipopolysaccharide Membranes.

Degree: 2019, University of Waterloo

 Antimicrobial peptides (AMPs) are naturally-occurring peptide antibiotics. The way they work has inspired a vigorous search for optimized peptide antibiotics for fighting resistant bacteria. Cationic… (more)

Subjects/Keywords: cationic antimicrobial peptides; cell selectivity; electrostatic binding energy; cell density; wild-type lipopolysaccharide; LPS brush; gram-negative outer membrane; physical coarse-grained model

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APA (6th Edition):

Nourbakhsh, S. (2019). Biophysical Modelling of Antimicrobial Peptide’s Interactions with Phospholipid and Lipopolysaccharide Membranes. (Thesis). University of Waterloo. Retrieved from http://hdl.handle.net/10012/14694

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Nourbakhsh, Shokoofeh. “Biophysical Modelling of Antimicrobial Peptide’s Interactions with Phospholipid and Lipopolysaccharide Membranes.” 2019. Thesis, University of Waterloo. Accessed August 04, 2020. http://hdl.handle.net/10012/14694.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Nourbakhsh, Shokoofeh. “Biophysical Modelling of Antimicrobial Peptide’s Interactions with Phospholipid and Lipopolysaccharide Membranes.” 2019. Web. 04 Aug 2020.

Vancouver:

Nourbakhsh S. Biophysical Modelling of Antimicrobial Peptide’s Interactions with Phospholipid and Lipopolysaccharide Membranes. [Internet] [Thesis]. University of Waterloo; 2019. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/10012/14694.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Nourbakhsh S. Biophysical Modelling of Antimicrobial Peptide’s Interactions with Phospholipid and Lipopolysaccharide Membranes. [Thesis]. University of Waterloo; 2019. Available from: http://hdl.handle.net/10012/14694

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of Lund

25. Thuresson, Axel. Swelling and Microstructure of Nanoplatelet Systems.

Degree: 2017, University of Lund

 Many clay minerals consist of charged nanoplatelets that swell in an aqueous solution. The swelling and the microstructure depend on the type of clay mineral… (more)

Subjects/Keywords: Theoretical Chemistry; Nanoplatelets; Model clay system; Coarse grained models; Statistical mechanics; MC simulations; MD simulations; SAXS; Cryo-TEM; Laponite; Montmorillonite; Swelling; Tactoid

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APA (6th Edition):

Thuresson, A. (2017). Swelling and Microstructure of Nanoplatelet Systems. (Doctoral Dissertation). University of Lund. Retrieved from https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf

Chicago Manual of Style (16th Edition):

Thuresson, Axel. “Swelling and Microstructure of Nanoplatelet Systems.” 2017. Doctoral Dissertation, University of Lund. Accessed August 04, 2020. https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf.

MLA Handbook (7th Edition):

Thuresson, Axel. “Swelling and Microstructure of Nanoplatelet Systems.” 2017. Web. 04 Aug 2020.

Vancouver:

Thuresson A. Swelling and Microstructure of Nanoplatelet Systems. [Internet] [Doctoral dissertation]. University of Lund; 2017. [cited 2020 Aug 04]. Available from: https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf.

Council of Science Editors:

Thuresson A. Swelling and Microstructure of Nanoplatelet Systems. [Doctoral Dissertation]. University of Lund; 2017. Available from: https://lup.lub.lu.se/record/ba0361c9-7492-41cc-9287-5d8534490f5d ; https://portal.research.lu.se/ws/files/25069090/Axel_Thuresson_spikfil.pdf


Queens University

26. Pecheanu, Rodica. Molecular Dynamics Simulations of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine and 5-(4-butyloxyphenyl)-2-octyloxypyrimidine Liquid Crystal Phases .

Degree: Chemistry, 2009, Queens University

 Molecular dynamics simulations of the liquid crystal phases of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine (2PhP) and 5-(4-butyloxyphenyl)-2-octyloxy-pyrimidine (5PhP) are the focus of this thesis. The 2PhP and 5PhP mesogens… (more)

Subjects/Keywords: Molecular Dynamics Simulations; Liquid Crystals; Smectogens; Force Field Design; Coarse-grained Model

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APA (6th Edition):

Pecheanu, R. (2009). Molecular Dynamics Simulations of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine and 5-(4-butyloxyphenyl)-2-octyloxypyrimidine Liquid Crystal Phases . (Thesis). Queens University. Retrieved from http://hdl.handle.net/1974/5295

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Pecheanu, Rodica. “Molecular Dynamics Simulations of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine and 5-(4-butyloxyphenyl)-2-octyloxypyrimidine Liquid Crystal Phases .” 2009. Thesis, Queens University. Accessed August 04, 2020. http://hdl.handle.net/1974/5295.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Pecheanu, Rodica. “Molecular Dynamics Simulations of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine and 5-(4-butyloxyphenyl)-2-octyloxypyrimidine Liquid Crystal Phases .” 2009. Web. 04 Aug 2020.

Vancouver:

Pecheanu R. Molecular Dynamics Simulations of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine and 5-(4-butyloxyphenyl)-2-octyloxypyrimidine Liquid Crystal Phases . [Internet] [Thesis]. Queens University; 2009. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/1974/5295.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Pecheanu R. Molecular Dynamics Simulations of 2-(4-butyloxyphenyl)-5-octyloxypyrimidine and 5-(4-butyloxyphenyl)-2-octyloxypyrimidine Liquid Crystal Phases . [Thesis]. Queens University; 2009. Available from: http://hdl.handle.net/1974/5295

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


University of New Mexico

27. Edens, Lance Edward. Theory, Multiscale Simulations, and Experiments on Mesoscale Multifunctional Systems.

Degree: Department of Chemistry and Chemical Biology, 2015, University of New Mexico

 Computational simulations use theoretical models to reproduce, as accurately as possible, the observed real-world behavior of complex structures. Guided by experimental observations, many multiscale/coarse-grained simulations… (more)

Subjects/Keywords: Biocidal surface; AFM; Atomic Force Microscopy; bacterial adhesion; Biocidal surface; Brownian dynamics; coarse-grained simulations; DNA; DNA model; DNA polymerases; Effective Energy Function; Escherichia coli; computational simulations; multifunctional surface; multiscale simulations; medial axis transform; phenylene ethynylene; poly(N-isopropylacrylamide); PNIPAAm; porin; theoretical model

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APA (6th Edition):

Edens, L. E. (2015). Theory, Multiscale Simulations, and Experiments on Mesoscale Multifunctional Systems. (Doctoral Dissertation). University of New Mexico. Retrieved from https://digitalrepository.unm.edu/chem_etds/42

Chicago Manual of Style (16th Edition):

Edens, Lance Edward. “Theory, Multiscale Simulations, and Experiments on Mesoscale Multifunctional Systems.” 2015. Doctoral Dissertation, University of New Mexico. Accessed August 04, 2020. https://digitalrepository.unm.edu/chem_etds/42.

MLA Handbook (7th Edition):

Edens, Lance Edward. “Theory, Multiscale Simulations, and Experiments on Mesoscale Multifunctional Systems.” 2015. Web. 04 Aug 2020.

Vancouver:

Edens LE. Theory, Multiscale Simulations, and Experiments on Mesoscale Multifunctional Systems. [Internet] [Doctoral dissertation]. University of New Mexico; 2015. [cited 2020 Aug 04]. Available from: https://digitalrepository.unm.edu/chem_etds/42.

Council of Science Editors:

Edens LE. Theory, Multiscale Simulations, and Experiments on Mesoscale Multifunctional Systems. [Doctoral Dissertation]. University of New Mexico; 2015. Available from: https://digitalrepository.unm.edu/chem_etds/42

28. Alanazi, Mansour Awadh, Alanazi. Coarse-grained model for a motor protein on a microtubule.

Degree: MS, Physics, 2017, University of Akron

 The function of cells relies on the transport of substances within the cell. In eukaryotic cells, active transport by motor proteins moving on a substrate… (more)

Subjects/Keywords: Biophysics; Physics; microtubule, motor protein, coarse-grained model, Brownian dynamics, simulations

…protofilament with α and β tubulin units (top) and of the coarse-grained microtubule model… …x5D; used experimental data to develop a coarse-grained model for molecular dynamics… …simulations of microtubules. In a coarse-grained model, each site represents a large number of atoms… …developed a molecular structural mechanics model for microtubules using the coarse-grained site… …tubulin units (top) and of the coarse-grained microtubule model with longitudinal and… 

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APA (6th Edition):

Alanazi, Mansour Awadh, A. (2017). Coarse-grained model for a motor protein on a microtubule. (Masters Thesis). University of Akron. Retrieved from http://rave.ohiolink.edu/etdc/view?acc_num=akron1515161903658569

Chicago Manual of Style (16th Edition):

Alanazi, Mansour Awadh, Alanazi. “Coarse-grained model for a motor protein on a microtubule.” 2017. Masters Thesis, University of Akron. Accessed August 04, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=akron1515161903658569.

MLA Handbook (7th Edition):

Alanazi, Mansour Awadh, Alanazi. “Coarse-grained model for a motor protein on a microtubule.” 2017. Web. 04 Aug 2020.

Vancouver:

Alanazi, Mansour Awadh A. Coarse-grained model for a motor protein on a microtubule. [Internet] [Masters thesis]. University of Akron; 2017. [cited 2020 Aug 04]. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron1515161903658569.

Council of Science Editors:

Alanazi, Mansour Awadh A. Coarse-grained model for a motor protein on a microtubule. [Masters Thesis]. University of Akron; 2017. Available from: http://rave.ohiolink.edu/etdc/view?acc_num=akron1515161903658569

29. Jung, Narina. Instability patterns of evaporative dendrimer deposits.

Degree: PhD, Aerospace Engineering and Mechanics, 2012, University of Minnesota

 The purpose of this project is to understand the instability mechanism behind dendrimer pattern formation in evaporating micro-meter size droplets. Evaporation of droplets of alcohol-dendrimer… (more)

Subjects/Keywords: Coarse grained lattice model; Coffee rings; Dendrimers; Evaporative deposit patterns; Monte Carlo method; Nanopartice self-assembly

…interaction. A simple coarse grained lattice is considered to model both a convective flow and an… …coarse grained Ising-type model, of the type used to describe the order-disorder transition in… …mesoscopic coarse grained lattice model is used for the self-assembly 2.2. Evaporative Deposit… …grained lattice model was proposed by Rabani et al. and is 1.3. Outline 3 suitable to study… …These experiments motivated the presesnt study. We build a coarse 1.3. Outline 4 grained… 

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APA (6th Edition):

Jung, N. (2012). Instability patterns of evaporative dendrimer deposits. (Doctoral Dissertation). University of Minnesota. Retrieved from http://purl.umn.edu/137580

Chicago Manual of Style (16th Edition):

Jung, Narina. “Instability patterns of evaporative dendrimer deposits.” 2012. Doctoral Dissertation, University of Minnesota. Accessed August 04, 2020. http://purl.umn.edu/137580.

MLA Handbook (7th Edition):

Jung, Narina. “Instability patterns of evaporative dendrimer deposits.” 2012. Web. 04 Aug 2020.

Vancouver:

Jung N. Instability patterns of evaporative dendrimer deposits. [Internet] [Doctoral dissertation]. University of Minnesota; 2012. [cited 2020 Aug 04]. Available from: http://purl.umn.edu/137580.

Council of Science Editors:

Jung N. Instability patterns of evaporative dendrimer deposits. [Doctoral Dissertation]. University of Minnesota; 2012. Available from: http://purl.umn.edu/137580

30. Xia, Zhen, active 2013. Modeling the structure, dynamics, and interactions of biological molecules.

Degree: PhD, Biomedical Engineering, 2013, University of Texas – Austin

 Biological molecules are essential parts of organisms and participate in a variety of biological processes within cells. Understanding the relationship between sequence, structure, and function… (more)

Subjects/Keywords: Structural modeling; Molecular dynamics; Protein; RNA; Coarse-grained model; Atomistic model; RNA silencing; Influenza; Polarizable force field

Coarse-Grained Model for Simulation of RNA Three-Dimensional Structures 11 2.1 Introduction… …Determination of the RNA coarse-grained model parameters ....19 2.2.4 Optimization of the non-bonded… …60 Figure 3.2: Representation of dialanine coarse-grained GBEMP model. Ellipsoids encompass… …Later in 2004, McCammon and coworkers combined a similar one-bead RNA coarse-grained model… …the coarse-grained model is described by simple electrostatic potentials of each RNA… 

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APA (6th Edition):

Xia, Zhen, a. 2. (2013). Modeling the structure, dynamics, and interactions of biological molecules. (Doctoral Dissertation). University of Texas – Austin. Retrieved from http://hdl.handle.net/2152/21875

Chicago Manual of Style (16th Edition):

Xia, Zhen, active 2013. “Modeling the structure, dynamics, and interactions of biological molecules.” 2013. Doctoral Dissertation, University of Texas – Austin. Accessed August 04, 2020. http://hdl.handle.net/2152/21875.

MLA Handbook (7th Edition):

Xia, Zhen, active 2013. “Modeling the structure, dynamics, and interactions of biological molecules.” 2013. Web. 04 Aug 2020.

Vancouver:

Xia, Zhen a2. Modeling the structure, dynamics, and interactions of biological molecules. [Internet] [Doctoral dissertation]. University of Texas – Austin; 2013. [cited 2020 Aug 04]. Available from: http://hdl.handle.net/2152/21875.

Council of Science Editors:

Xia, Zhen a2. Modeling the structure, dynamics, and interactions of biological molecules. [Doctoral Dissertation]. University of Texas – Austin; 2013. Available from: http://hdl.handle.net/2152/21875

[1] [2]

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