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1.
Nye, Alice C.
Stages of Risk: Economies of Ambivalence in Cancer
Genetics.
Degree: PhD, Theatre Arts and Performance Studies, 2014, Brown University
URL: https://repository.library.brown.edu/studio/item/bdr:386332/
► This dissertation examines the constitutive relation of gender and performance to knowledge production in the genetic sciences in twentieth and twenty-first century US. In recent…
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▼ This dissertation examines the constitutive relation
of gender and performance to knowledge production in the genetic
sciences in twentieth and twenty-first century US. In recent
decades, a series of contradictions have emerged in the field of
breast and ovarian cancer genetics that challenge common
distinctions between biological nature and cultural artifice. From
laboratory practices of cloning and patenting genes to medical
practices of treating genetic risk as a disease by surgically
removing healthy breasts and ovaries, this project argues that
scientific understandings of genetic “natures” are drawing on
mimetic “second natures” as a privileged mode of inquiry, evidence,
and intervention. Combining archival and ethnographic research with
critical analysis of medial, textual, and visual cultures, each
chapter of this dissertation takes up a key paradox that inheres in
the new genetics. In the process, it illuminates the rise of an
alternative approach to knowledge production in which stakeholders
are highlighting the ontological ambivalence of scientific
knowledge objects, rather than treating them as natural or
unmediated matters of fact. Across diverse social, scientific,
clinical, economic, and legal domains, this project shows how
practices of staging the artifice of biological nature and
rendering mimesis apparent have come to characterize modes of
knowing and intervening in bodies. This epistemic shift toward
staging the constructedness of biological realities signals three
broader mutations in contemporary economies of gender and
technoscience. First, conventionally feminized modes of knowing
such as affect, imitation, and relation are increasingly vital, not
inimical, to scientific practice. Second, lay actors are playing a
more active and critical role in producing and contesting genetic
knowledge. And lastly, by staging, rather than effacing, the
construction of genetic natures, lay and expert stakeholders are
rendering newly apparent the uneven social, economic, and political
landscape of women’s health.
Advisors/Committee Members: Schneider, Rebecca (Director), Hamdy, Sherine (Reader), Ybarra, Patricia (Reader), Ridout, Nicholas (Reader).
Subjects/Keywords: Biomedicine
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APA ·
Chicago ·
MLA ·
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APA (6th Edition):
Nye, A. C. (2014). Stages of Risk: Economies of Ambivalence in Cancer
Genetics. (Doctoral Dissertation). Brown University. Retrieved from https://repository.library.brown.edu/studio/item/bdr:386332/
Chicago Manual of Style (16th Edition):
Nye, Alice C. “Stages of Risk: Economies of Ambivalence in Cancer
Genetics.” 2014. Doctoral Dissertation, Brown University. Accessed January 17, 2021.
https://repository.library.brown.edu/studio/item/bdr:386332/.
MLA Handbook (7th Edition):
Nye, Alice C. “Stages of Risk: Economies of Ambivalence in Cancer
Genetics.” 2014. Web. 17 Jan 2021.
Vancouver:
Nye AC. Stages of Risk: Economies of Ambivalence in Cancer
Genetics. [Internet] [Doctoral dissertation]. Brown University; 2014. [cited 2021 Jan 17].
Available from: https://repository.library.brown.edu/studio/item/bdr:386332/.
Council of Science Editors:
Nye AC. Stages of Risk: Economies of Ambivalence in Cancer
Genetics. [Doctoral Dissertation]. Brown University; 2014. Available from: https://repository.library.brown.edu/studio/item/bdr:386332/

University of Helsinki
2.
Lavilla-Alonso, Sergio.
Adenovirus vectors with modified tropism for the treatment of colorectal cancer.
Degree: Haartman Institute, Department of Virology; Molecular Cancer Biology Program, Biomedicum, 2012, University of Helsinki
URL: http://hdl.handle.net/10138/32936
► Despite the rapid advance of cancer research and improvement of conventional therapeutic regimes like chemotherapy, surgery, immunotherapy or radiotherapy, cancer remains a leading cause of…
(more)
▼ Despite the rapid advance of cancer research and improvement of conventional therapeutic regimes like chemotherapy, surgery, immunotherapy or radiotherapy, cancer remains a leading cause of death worldwide. Metastatic disease normally represents the most deadly stage and leads to the poorest prognosis. The disseminated location of metastases makes it even more difficult nowadays for existing drugs to target tumors without damaging healthy tissues. The work presented in this Doctoral Thesis is aimed at developing targeted adenoviral vectors and regimes that can be applied to the treatment of cancer, especially colorectal cancer.
Gene therapists have explored widely interactions of the viruses to cancer and normal cells and have proved that molecular modifications in the capsid can unleash striking differences in viral tropism. In this Doctoral Thesis, the utility of arginine-glycine-aspartic acid (RGD) targeting αvβ integrins substituted for the lysine-lysine-threonine-lysine (KKTK) domain of the fiber shaft or inserted in the HI-loop of adenovirus serotype 5 (Ad5) was evaluated for increased tumor targeting and antitumor efficacy. Both modifications increased gene transfer efficacy in colorectal cancer cell lines and improved the tumor to-normal ratio after systemic administration of the vector. Furthermore, antitumor potency was not compromised with RGD modified viruses suggesting that an increased safety profile did not involve any loss of therapeutic effect.
Treatments based on adenovirus vectors should not have negative effects on tumor progression or metastases. In order to evaluate this possibility, we designed a novel murine model of human colorectal cancer (CoCa) to test our treatments. To this end, we have developed a readily imageable mouse model of colorectal cancer featuring highly reproducible formation of spontaneous liver metastases derived from intrasplenic primary tumors. We optimized several experimental variables, and found that the correct choice of cell line and genetic background of the recipient mice as well as their age, were critical for the establishment of a useful animal model. A magnetic resonance imaging (MRI) protocol was optimized for use with this mouse model, and demonstrated to be a powerful method for analyzing the antitumor effects of an experimental therapy.
Poor spreading of the virus through tumor tissue is one of the major issues limiting efficacy of oncolytic adenoviruses, even after local administration by intratumoral injection. In this study, ECM-degrading proteases relaxin, hyaluronidase, elastase, and macrophage metalloelastase (MME) were used to increase oncolytic adenovirus spreading. Moreover, MME improved the overall antitumor/antitumour efficacy of oncolytic adenovirus in subcutaneous HCT116 xenografts. In a liver metastatic colorectal cancer model, intratumoral treatment of HT29 primary tumors with MME monotherapy or with oncolytic adenovirus inhibited tumor growth. Combination therapy showed no increased mortality in comparison to monotherapies. In addition,…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
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APA (6th Edition):
Lavilla-Alonso, S. (2012). Adenovirus vectors with modified tropism for the treatment of colorectal cancer. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/32936
Chicago Manual of Style (16th Edition):
Lavilla-Alonso, Sergio. “Adenovirus vectors with modified tropism for the treatment of colorectal cancer.” 2012. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/32936.
MLA Handbook (7th Edition):
Lavilla-Alonso, Sergio. “Adenovirus vectors with modified tropism for the treatment of colorectal cancer.” 2012. Web. 17 Jan 2021.
Vancouver:
Lavilla-Alonso S. Adenovirus vectors with modified tropism for the treatment of colorectal cancer. [Internet] [Doctoral dissertation]. University of Helsinki; 2012. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/32936.
Council of Science Editors:
Lavilla-Alonso S. Adenovirus vectors with modified tropism for the treatment of colorectal cancer. [Doctoral Dissertation]. University of Helsinki; 2012. Available from: http://hdl.handle.net/10138/32936

University of Helsinki
3.
Zheng, Wei.
Regulation of Angiogenesis and Lymphangiogenesis by Endothelial Cell Signaling Molecules.
Degree: Institute of Biomedicine, Research Program Unit, 2013, University of Helsinki
URL: http://hdl.handle.net/10138/42171
► Blood vessels deliver nutrients and oxygen to tissues, whereas lymphatic vessels collect interstitial fluid and absorb lipids. Both types of vessels are involved in immune…
(more)
▼ Blood vessels deliver nutrients and oxygen to tissues, whereas lymphatic vessels collect interstitial fluid and absorb lipids. Both types of vessels are involved in immune surveillance. Malformation or malfunction of either vasculature is closely associated with various diseases. Although the molecular mechanisms regulating the growth, development and function of these vessels have begun to emerge in recent decades, many questions remain. This study aimed to understand if and how the growth of new blood and lymphatic vessels (angiogenesis and lymphangiogenesis, respectively) is regulated by the endothelial signaling molecules BMX, VEGFR-3, notch 1 and angiopoietin-2.
BMX, a non-receptor tyrosine kinase, is upregulated in some types of cancer and promotes cell survival, migration and proliferation. Under physiological conditions, it is also highly expressed in blood endothelial cells (BECs). Thus, we hypothesized that BMX might contribute to tumor growth by promoting tumor angiogenesis. Using multiple tumor implantation and spontaneous tumor models in Bmx gene-deleted mice, we found that tumor angiogenesis and growth were significantly reduced in the absence of BMX. Conversely, when BMX was overexpressed in epithelial keratinocytes, chemical carcinogen led to increased tumor angiogenesis and growth.
VEGFR-3 is a growth factor receptor on the surface of endothelial cells (ECs). Here, we characterized a blocking antibody that inhibits VEGFR-3 signaling by a novel mechanism. In contrast to conventional blocking antibodies that prevent ligand-receptor binding, this new antibody inhibited dimerization of two identical VEGFR-3 molecules, thereby impairing signaling activation and sprouting of lymphatic endothelial cells (LECs). These inhibitory effects persisted even at ligand concentrations so high that conventional blocking antibodies were no longer effective. Importantly, concurrent treatment with both types of antibodies yielded combined additive benefits.
Notch signaling regulates angiogenic sprouting. We found in this study that Notch inhibitors enhance VEGF-induced lymphatic sprouting in 3-dimensional EC sprouting assays in vitro. In vivo, VEGF alone induced only lymphatic dilation but not sprouting. However, concomitant treatment with a Notch inhibitor induced both vascular events. In addition, a mosaic-sprouting assay showed that Notch signaling also determined the fates of tip/stalk cells (the cell leading a vessel sprout and the following cells, respectively) during lymphatic sprouting.
Angiopoietin-2 (Ang2) is an endothelial growth factor required for proper lymphatic remodeling during development, but the exact mechanisms of this process have previously remained unclear. In contrast to the zipper-like pattern of cell-cell junctions (zippers) in collecting lymphatic vessels, mature lymphatic capillaries have a distinct pattern of button-like junctions (buttons), which transform from zippers during development. We found in this study that Ang2 is indispensable for such transformation of the junctional…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Zheng, W. (2013). Regulation of Angiogenesis and Lymphangiogenesis by Endothelial Cell Signaling Molecules. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/42171
Chicago Manual of Style (16th Edition):
Zheng, Wei. “Regulation of Angiogenesis and Lymphangiogenesis by Endothelial Cell Signaling Molecules.” 2013. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/42171.
MLA Handbook (7th Edition):
Zheng, Wei. “Regulation of Angiogenesis and Lymphangiogenesis by Endothelial Cell Signaling Molecules.” 2013. Web. 17 Jan 2021.
Vancouver:
Zheng W. Regulation of Angiogenesis and Lymphangiogenesis by Endothelial Cell Signaling Molecules. [Internet] [Doctoral dissertation]. University of Helsinki; 2013. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/42171.
Council of Science Editors:
Zheng W. Regulation of Angiogenesis and Lymphangiogenesis by Endothelial Cell Signaling Molecules. [Doctoral Dissertation]. University of Helsinki; 2013. Available from: http://hdl.handle.net/10138/42171

University of Helsinki
4.
Zarkada, Georgia.
VEGFR3 and Notch signaling in angiogenesis.
Degree: Institute of Biomedicine, Faculty of Medicine; Wihuri Research Institute; Research Programs Unit, Translational Cancer Biology, 2014, University of Helsinki
URL: http://hdl.handle.net/10138/135563
► Blood and lymphatic vessels form extensive networks throughout the body, which function in order to deliver oxygen and nutrients to the tissues, to remove extravasated…
(more)
▼ Blood and lymphatic vessels form extensive networks throughout the body, which function in order to deliver oxygen and nutrients to the tissues, to remove extravasated fluid and to absorb dietary lipids. The formation of new blood and lymphatic vessels (termed angiogenesis and lymphangiogenesis) is critical during embryonic development and in the adult, and is regulated by multiple signaling pathways. Vascular Endothelial Growth Factors (VEGFs) and their receptors (VEGFRs), as well as the Notch signaling system, are key governors of blood and lymphatic endothelial cell fate, and regulate angiogenesis and lymphangiogenesis in health and disease. Despite the numerous recent advances in the field of vascular biology, many steps in the complex processes of angiogenesis and lymphangiogenesis remain unclear. In this study we investigated the role of VEGFR3 signaling in blood endothelial cells, tip cell specification, as well as the interplay of the receptor with the VEGFR2 and the Notch signaling pathways during angiogenesis.
VEGFR3 is a tyrosine kinase receptor that is mainly expressed in lymphatic endothelial cells in the adult. We observed VEGFR3 expression in sprouts that guide the blood vascular endothelium in angiogenic conditions. VEGFR3 blockade with a monoclonal antibody displayed synergistic properties with simultaneous VEGFR2 targeting in reducing angiogenesis and inhibiting tumor growth. Furthermore we found that Notch signaling suppresses VEGFR3 expression in endothelial cells, identifying VEGFR3 as a novel tip cell marker, which is normally repressed by Notch activation.
In the next step we employed a combination of genetic and in vitro models to show that loss of VEGFR3 results in a hypervascular phenotype, accompanied by loss of Notch signaling. VEGFR3 could be stimulated by VEGFC and activate Notch in blood endothelial cells. Our results point towards a mechanism where VEGFC produced by macrophages at the vascular front acts via VEGFR3 to activate Notch and turn tip into stalk cells; thus promoting the formation of stable vascular loops. Furthermore we identified the transcription factor FOXC2 as the downstream target of the VEGFC/VEGFR3/Notch signaling cascade. These data reinforce the idea that VEGFR3 has two distinct signaling modalities, one ligand-dependent and one ligand-independent, and that different perturbations in VEGFR3 expression and function result in diverse vascular phenotypes.
Subsequently we investigated the interplay of VEGFR2 and VEGFR3 in postnatal angiogenesis and lymphangiogenesis, using a genetic approach of conditional mutagenesis. Various combinations of genetic ablation of VEGFRs and pharmacological inhibition of Notch showed that VEGFR2 is irreplaceable during sprouting angiogenesis, also in endothelial cells with low Notch signaling, and that it acts upstream of VEGFR3 expression in angiogenic settings. On the other hand VEGFR3 suppressed VEGFR2 expression in a negative feedback loop. Finally we employed for the first time lymphatic endothelial specific deletion of VEGFRs…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Zarkada, G. (2014). VEGFR3 and Notch signaling in angiogenesis. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/135563
Chicago Manual of Style (16th Edition):
Zarkada, Georgia. “VEGFR3 and Notch signaling in angiogenesis.” 2014. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/135563.
MLA Handbook (7th Edition):
Zarkada, Georgia. “VEGFR3 and Notch signaling in angiogenesis.” 2014. Web. 17 Jan 2021.
Vancouver:
Zarkada G. VEGFR3 and Notch signaling in angiogenesis. [Internet] [Doctoral dissertation]. University of Helsinki; 2014. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/135563.
Council of Science Editors:
Zarkada G. VEGFR3 and Notch signaling in angiogenesis. [Doctoral Dissertation]. University of Helsinki; 2014. Available from: http://hdl.handle.net/10138/135563

University of Helsinki
5.
Wasik, Anita Agnieszka.
Molecular mechanisms regulating glucose uptake into podocytes: Role of ezrin, septin 7 and nonmuscle myosin IIA.
Degree: Haartman Institute, 2014, University of Helsinki
URL: http://hdl.handle.net/10138/135955
► Diabetic nephropathy (DN) is a major microvascular complication of diabetes and a common cause of end-stage renal disease. Mechanisms leading to the development of DN…
(more)
▼ Diabetic nephropathy (DN) is a major microvascular complication of diabetes and a common cause of end-stage renal disease. Mechanisms leading to the development of DN are not fully understood, but podocyte injury is involved. Interestingly, in respect to glucose uptake podocytes are uniquely insulin sensitive cells. Insulin rapidly induces remodeling of the actin cytoskeleton and leads to glucose uptake via glucose transporters GLUT1 and GLUT4. Defects in the trafficking of the glucose transporters may affect the insulin sensitivity of podocytes. Thus, regulators of glucose transporter trafficking may provide suitable targets to enhance insulin sensitivity of podocytes and prevent the development and progression of DN. However, the precise mechanisms regulating glucose transporter trafficking and glucose uptake into podocytes are largely uncharacterized.
To identify changes in the expression of glomerular proteins at an early stage of DN we performed quantitative proteomic profiling of glomeruli isolated from rats with streptozotocin-induced diabetes and controls. Ezrin was found to be downregulated in diabetic glomeruli. In cultured podocytes depletion of ezrin increased glucose uptake by increasing translocation of GLUT1 to the plasma membrane. Loss of ezrin also induced actin remodelling, which involved cofilin-1. Phosphorylated cofilin-1 was upregulated in diabetic glomeruli suggesting altered actin dynamics. Furthermore, reduced expression of ezrin was found in the podocytes of human patients with diabetes.
We found that the filament-forming septin 7 forms a complex with CD2AP and nephrin, both of which are essential for glomerular ultrafiltration. We showed that septin 7 negatively regulates GLUT4 storage vesicle (GSV) trafficking by forming a physical barrier between the vesicles and the plasma membrane. The novel interaction partner of septin 7, nonmuscle myosin heavy chain IIA (NMHC-IIA), was found to positively regulate insulin-stimulated glucose uptake into podocytes. Loss of NMHC-IIA reduced formation of the SNARE complex involved in GSV exocytosis. Furthermore, we presented that insulin regulates the association of septin 7 and phosphorylated RLC (pp-RLC), a part of myosin hexameric complex, with a plasma membrane SNARE, SNAP23. pp-RLC is upregulated in diabetic glomeruli and cultured human podocytes exposed to macroalbuminuric sera from patients with Type 1 diabetes.
Our findings indicate that ezrin, septin 7 and NMHC-IIA regulate glucose uptake into podocytes and may play a role in the development of the renal complication in diabetes by regulating glucose transport and organization of the actin cytoskeleton in podocytes.
Diabeettinen munuaissairaus on diabetekseen liittyvä lisäsairaus. Diabeettisen munuaissairauden alkuvaiheen tunnusmerkki on valkuaisen vähäinen määrä virtsassa (mikroalbuminuria). Taudin edetessä valkuaisen määrä virtsassa lisääntyy ja voi johtaa varsinaiseen valkuaisvirtsaisuuteen. Diabeettisen munuaissairauden tarkkaa syntymekanismia ei tiedetä, mutta podosyyttien eli…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Wasik, A. A. (2014). Molecular mechanisms regulating glucose uptake into podocytes: Role of ezrin, septin 7 and nonmuscle myosin IIA. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/135955
Chicago Manual of Style (16th Edition):
Wasik, Anita Agnieszka. “Molecular mechanisms regulating glucose uptake into podocytes: Role of ezrin, septin 7 and nonmuscle myosin IIA.” 2014. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/135955.
MLA Handbook (7th Edition):
Wasik, Anita Agnieszka. “Molecular mechanisms regulating glucose uptake into podocytes: Role of ezrin, septin 7 and nonmuscle myosin IIA.” 2014. Web. 17 Jan 2021.
Vancouver:
Wasik AA. Molecular mechanisms regulating glucose uptake into podocytes: Role of ezrin, septin 7 and nonmuscle myosin IIA. [Internet] [Doctoral dissertation]. University of Helsinki; 2014. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/135955.
Council of Science Editors:
Wasik AA. Molecular mechanisms regulating glucose uptake into podocytes: Role of ezrin, septin 7 and nonmuscle myosin IIA. [Doctoral Dissertation]. University of Helsinki; 2014. Available from: http://hdl.handle.net/10138/135955

University of Helsinki
6.
Scifo, Enzo.
Systematic Analysis of disease pathways in Congenital, Infantile and Juvenile Neuronal Ceroid Lipofuscinoses.
Degree: Institute of Biomedicine, Meilahti Clinical Proteomics Core Facility, 2014, University of Helsinki
URL: http://hdl.handle.net/10138/136286
► Neuronal ceroid lipofuscinoses (NCL) are common inherited childhood brain disorders. Since 1995, 13 known NCL causative genes (CLN1-8, CLN10-14) have been identified. Despite progress in…
(more)
▼ Neuronal ceroid lipofuscinoses (NCL) are common inherited childhood brain disorders. Since 1995, 13 known NCL causative genes (CLN1-8, CLN10-14) have been identified. Despite progress in the NCL field, the primary function and physiological roles of most NCL proteins remain unresolved. In this thesis, we utilized various techniques, such as: functional proteomics, bioinformatics, and mouse disease models, in an effort to clarify disease pathways associated with congenital (CLN10), infantile, late-Infantile (CLN1, CLN5) and juvenile NCL (CLN3) in the human brain.
Firstly, we examined the synaptic proteome in a cathepsin D (Ctsd / Cln10) knockout mouse model of congenital NCL, where the synaptic pathology resembles that of patients. Quantitative mass spectrometry analysis of mouse brain synaptosomes, showed that 43 proteins were differentially expressed in the Ctsd knockout mice brains. We used protein-protein interaction databases to generate a network of differentially expressed proteins and checked individual proteins for involvement in processes, pathways or disease phenotypes. This work highlighted defects in migratory functions of cathepsin D deficient cells that were attributed to downregulation of cytoskeletal proteins.
We also aimed to map the CLN3-CLN5 protein interactome in the brain by identifying their associated proteins. Protein complexes from CLN3 or CLN5 expressing SH-SY5Y stable cells were analysed by mass spectrometry and processed by bioinformatics, to unravel molecular mechanisms underlying CLN3 and CLN5 diseases. Novel CLN3 and CLN5 interacting partners (42 and 31, respectively) were identified in this study. The extent of crosstalk amongst CLN3 and CLN5, suggests that the mechanisms leading to the functional deficits are shared between them. CLN3 was implicated in new roles of G-protein signalling and protein folding / sorting in the ER.
Finally, we analysed protein complexes from human PPT1 (CLN1) expressing SH-SY5Y stable cells as described above. The goal of this study was to identify in vivo PPT1 substrates that could provide insight on the onset and progression of CLN1 disease. Our findings suggest putative new roles of PPT1 in neuronal migration and dopamine receptor mediated signalling pathway.
Neuronaaliset seroidilipofuskinoosit (NCL) ovat yleisimpiä lapsuusiässä ilmeneviä periytyviä aivosairauksia. Ensimmäinen NCL:ia aiheuttava geenivirhe julkaistiin jo vuonna 1995 ja sittemmin NCL:ia aiheuttavia alttiusgeenejä on löydetty jo yhteensä 13 (CLN1-8, CLN10-14). Tästä huolimatta useimpien NCL-tauteihin liittyvien geenien ja niiden koodaamien proteiinien ensisijaiset tehtävät soluissa ovat jääneet epäselviksi. Tässä väitöskirjatyössä on tutkittu NCL-tautien kongenitaaliseen (CLN10) sekä lapsuusiän (CLN1), myöhäisen lapsuusiän (CLN5) ja nuoruusiän ilmenemismuotoon johtavia muutoksia solujen toiminnassa hyödyntämällä funktionaalisen proteomiikan ja bioinformatiikan sovelluksia sekä kyseisiin tauteihin kehitettyjä hiirimalleja.
Ensimmäisessä työssä hyödynsimme NCL:in kongenitaaliselle…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Scifo, E. (2014). Systematic Analysis of disease pathways in Congenital, Infantile and Juvenile Neuronal Ceroid Lipofuscinoses. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/136286
Chicago Manual of Style (16th Edition):
Scifo, Enzo. “Systematic Analysis of disease pathways in Congenital, Infantile and Juvenile Neuronal Ceroid Lipofuscinoses.” 2014. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/136286.
MLA Handbook (7th Edition):
Scifo, Enzo. “Systematic Analysis of disease pathways in Congenital, Infantile and Juvenile Neuronal Ceroid Lipofuscinoses.” 2014. Web. 17 Jan 2021.
Vancouver:
Scifo E. Systematic Analysis of disease pathways in Congenital, Infantile and Juvenile Neuronal Ceroid Lipofuscinoses. [Internet] [Doctoral dissertation]. University of Helsinki; 2014. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/136286.
Council of Science Editors:
Scifo E. Systematic Analysis of disease pathways in Congenital, Infantile and Juvenile Neuronal Ceroid Lipofuscinoses. [Doctoral Dissertation]. University of Helsinki; 2014. Available from: http://hdl.handle.net/10138/136286

University of Helsinki
7.
Rantanen, Ville.
Integration Platform for Biomedical Image Analysis.
Degree: Institute of Biomedicine, Research Programs Unit, 2015, University of Helsinki
URL: http://hdl.handle.net/10138/153857
► Images provide invaluable information to Biomedicine. Especially, microscopy as an information source has been providing knowledge for research and clinical diagnostics. We have moved away…
(more)
▼ Images provide invaluable information to Biomedicine. Especially, microscopy as an information source has been providing knowledge for research and clinical diagnostics. We have moved away from simply looking at the images to quantifiable computerized image analysis. Over the last decades, image analysis developers have prepared algorithms and software to address various scientific enquiries using images. These software are often created for a single purpose. Naturally, not even the most generic software can include all the algorithms ever created. From an image analysis developer point of view, the choice of software creates limitations. It limits the developer to the algorithms included and to the language it was developed in. Even if the software is modular and extendable, a specific language is required and the earlier algorithm implementations would have to be ported.
This thesis presents an integration platform for image analysis: Anima. It is capable of using existing software and including them in analysis workflows. Since image analysis is very case specific, custom processing commands are frequently needed. Anima comes with a large number of data and image analysis components developed directly for the platform, as well as components that send custom commands to the integrated software. All of the components can be executed in a single analysis pipeline.
Anima itself is built on top of Anduril, another software, inheriting its software architecture. Anduril gives Anima the power of parallel processing and rerun prevention mechanism, speeding up the development cycle of new algorithms. The usability of Anima for method development is shown by implementing new segmentation algorithms and visualization tools. The tools and methods are all suited to large data sets. To display the modularity, the tools are published as separate programs that are then integrated in Anima.
The usefulness of the platform is shown by applying it in different biomedical research settings. The settings include different organisms: human, rat and nematode; different sample material: brain tissue, lymphatic nodes and serum; and different medical interests: cerebral ischemia, cancer and allergy.
Anima is a versatile open-source image analysis platform, that encourages the use of best practices of programming habits. It makes the development of analysis workflows and individual algorithms more efficient.
Kuvantaminen on tärkeä tiedon lähde lääketieteelle. Erityisesti mikroskopia on tärkeä kuvapohjaisen tiedon tuottaja biolääketieteellisessä tutkimuksessa. Tietokoneteknologian ansiosta emme ole enää riippuvaisia ihmissilmistä kuvien tulkitsijana. Viime vuosikymmeninä kuva-analyysien kehittäjät ovat luoneet algoritmeja ja kokonaisia ohjelmistoja kuvien hyödyntämiseksi tieteellisiin tarkoituksiin. Useimmat näistä ohjelmista tehdään yhtä tutkimuskysymystä varten. Edes yleisluontoiset ohjelmistopaketit eivät voi sisältää menetelmiä kaikkiin tarkoituksiin. Kuva-analyysikehittäjälle ohjelman valinta luo myös rajoituksia.…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Rantanen, V. (2015). Integration Platform for Biomedical Image Analysis. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/153857
Chicago Manual of Style (16th Edition):
Rantanen, Ville. “Integration Platform for Biomedical Image Analysis.” 2015. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/153857.
MLA Handbook (7th Edition):
Rantanen, Ville. “Integration Platform for Biomedical Image Analysis.” 2015. Web. 17 Jan 2021.
Vancouver:
Rantanen V. Integration Platform for Biomedical Image Analysis. [Internet] [Doctoral dissertation]. University of Helsinki; 2015. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/153857.
Council of Science Editors:
Rantanen V. Integration Platform for Biomedical Image Analysis. [Doctoral Dissertation]. University of Helsinki; 2015. Available from: http://hdl.handle.net/10138/153857

University of Helsinki
8.
Kuryk, Lukasz.
STRATEGIES TO ENHANCE EFFICACY OF ONCOLYTIC VIROTHERAPY.
Degree: Centre for Drug Research (CDR) Division of Pharmaceutical Biosciences, 2016, University of Helsinki
URL: http://hdl.handle.net/10138/167783
► Despite major advances in conventional cancer treatments by surgery, chemotherapy, radiotherapy and their combination, the outcome remains partially ineffective against numerous cancer types, for example…
(more)
▼ Despite major advances in conventional cancer treatments by surgery, chemotherapy, radiotherapy and their combination, the outcome remains partially ineffective against numerous cancer types, for example mesothelioma, lung cancer, and colon cancer. Furthermore, due to resistance factors and the subsequent loss of response, which may occur rapidly during the conventional treatments regimes, new anti-cancer agents, presenting new mechanisms of action and lacking cross-resistance to commonly used therapies, are in high demand.
Oncolytic virotherapy is a promising anti-cancer strategy, and the approval of the first oncolytic virus, Imlygic (T-Vec, talimogene laherparepvec), in Western world by US Food and Drug Administration (FDA) and European Medicines Agency (EMA) has opened up new perspectives for improved treatment of cancer. Single therapy is rarely successful in treating cancer, particularly in metastatic or advanced cancer, and survival rates with monotherapies alone are generally poor. The combination of multiple therapies to treat cancer has already shown significant results in the standard care of cancer. This strategy utilizes the combination of both conventional and novel therapies that can bring the future promise of cancer treatment.
In this thesis it has been hypothesized that by combining oncolytic adenoviruses (oAd) with chemotherapeutic drugs and a biological agent we could improve anti-cancer efficacy through synergistic effect against cancer. Therefore, we have tested various treatment regimes with the overall goal being the improvement of oncolytic virotherapy efficacy. Secondly, since safety issues concerning gene therapy and viral vectors are tremendously important, we have performed studies on safety issues of adenoviral vectors. In brief, we have evaluated the anti-cancer activity of combination treatment with standard of care (SoC) chemotherapy (Pemetrexed, Cisplatin, Carboplatin) and Ad5/3-d24-GM-CSF (ONCOS-102) in vitro and in a xenograft BALB/c model of human malignant mesothelioma (MM). We could show improved anti-tumor effects when ONCOS-102 was combined with SoC chemotherapy regimens over chemotherapy and virus alone. Combination therapy resulted in synergistic anti-cancer effect improving the therapeutic outcome. In a subsequent study we tested anti-cancer properties of the dipeptide L-Carnosine complexed with an oncolytic adenovirus (virus-L-Carnosine complex). The complex demonstrated improved anti-tumor efficacy both in vitro and in vivo in tested cancer models. In HCT116 colon and A549 lung cancer cells, the virus-L-Carnosine complex presented a higher transduction level and infectious titer over uncoated oncolytic adenovirus. The in vivo efficacy of the virus-L-Carnosine complex was tested in two cancer models: i) lung and ii) colon cancer xenograft mice models. It exhibited a significant reduction in tumor growth compared to other tested groups. Additionally, we investigated the molecular mechanism underlying the effects of the complex on tumor growth reduction.
Safety…
Subjects/Keywords: biomedicine; biomedicine
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Kuryk, L. (2016). STRATEGIES TO ENHANCE EFFICACY OF ONCOLYTIC VIROTHERAPY. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/167783
Chicago Manual of Style (16th Edition):
Kuryk, Lukasz. “STRATEGIES TO ENHANCE EFFICACY OF ONCOLYTIC VIROTHERAPY.” 2016. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/167783.
MLA Handbook (7th Edition):
Kuryk, Lukasz. “STRATEGIES TO ENHANCE EFFICACY OF ONCOLYTIC VIROTHERAPY.” 2016. Web. 17 Jan 2021.
Vancouver:
Kuryk L. STRATEGIES TO ENHANCE EFFICACY OF ONCOLYTIC VIROTHERAPY. [Internet] [Doctoral dissertation]. University of Helsinki; 2016. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/167783.
Council of Science Editors:
Kuryk L. STRATEGIES TO ENHANCE EFFICACY OF ONCOLYTIC VIROTHERAPY. [Doctoral Dissertation]. University of Helsinki; 2016. Available from: http://hdl.handle.net/10138/167783
9.
Chen, Ping.
Quantitative study of transcriptome dynamics during evolution and treatment resistance in cancer.
Degree: Institute of Biomedicine, Research Programs Unit, Genome-Scale Biology and Medicum, 2016, University of Helsinki
URL: http://hdl.handle.net/10138/159335
► Transcriptome, defined by the collection of all RNA molecules in a cell, acts as a central bridge that transfers genetic information into molecular functions. Transcriptome…
(more)
▼ Transcriptome, defined by the collection of all RNA molecules in a cell, acts as a central bridge that transfers genetic information into molecular functions. Transcriptome regulates the biological characteristics in all living organisms, thus it is one of the most important research subjects in biology. RNAs are transcribed at different levels tightly controlled by cellular conditions. This produces great diversity in cellular transcriptome dynamics, introducing a lot of complexity to the transcriptomic research. Though tremendous challenges exist, the study of transcriptome dynamics is essential to the understanding of the complex systems within the cells and cellular behavior.
The dynamics of transcriptome can be investigated by high-throughput technologies, such as microarrays and RNA-sequencing. The large amounts of data introduces challenges to data management, analysis and interpretation. To generate biologically testable and conclusive results, efficient computational methods are urgently needed.
This thesis includes theoretical and methodological research. The theoretical part of the research comprehensively studies the characteristics of gene expression, the splicing of ancient and novel exons during the evolution by comparative analysis on transcriptomic data of nine tissues from five species. The methodological research includes new methods developed to solve the research questions related to the study of transcriptomic dynamics in evolution and cancer. The main methods developed in this thesis are 1) exon age classifier, which is able to classify exons according to their evolutionary time, providing the basis for the theoretical study in this thesis; 2) MEAP, a new exon array preprocessing method for expression quantification at multi-levels; 3) PSFinder, a new approach to identify patient prognostic subgroups from treatment naive tumor samples based on their transcriptomic profiles and associated clinical survival times.
The theoretical part gives a comprehensive view on the mechanisms of dynamic changes during the evolution of the transcriptome, which provides a solid theoretical basis to the methodological part. The application of MEAP and PSFinder to high-grade serous ovarian cancer revealed a small set of isoform markers with distinct expression profiles for patient prognosis stratification. In combination with experimental validation, the results demonstrate the applicability of these methods in the quantification and stratification of tumor transcriptome dynamics, which provides new insights to the clinical diagnosis and precision medicine for human cancers.
转录组是细胞内所有RNA分子的集合,它将细胞内遗传信息编译为具体的功能性 分子。转录组调节了生物体内的各项生物学特性,是生物学中的重要研究对象之 一。在细胞各分子机制的严密调节控制下,RNA被转录为不同的水平。这产生了 细胞转录动态中的多样性,从而给转录组学的研究带来许多复杂性。因此转录组动 态的研究对了解细胞中的复杂系统及细胞行为极为重要,但也意味着转录组研究 的难度较高。
转录组的动态可以通过高通量技术,例如表达芯片及RNA测序来研究。大量的数 据给数据管理,分析及解释带来了挑战。有效的计算分析方法,是生成生物学上 可检测和确定性结果的关键。
本文包含了理论和方法的研究。该研究的理论部分对来自五种物种九种组织的转 录组数据进行比较分析,综合研究了在进化过程中基因表达及新老外显子的剪切 特性。该论文的方法学研究包括了为了解决进化及癌症中转录组动态研究的相关 问题而开发的新算法。本文中开发的主要方法有: 1) 外显子分类器,它能够根据…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Chen, P. (2016). Quantitative study of transcriptome dynamics during evolution and treatment resistance in cancer. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/159335
Chicago Manual of Style (16th Edition):
Chen, Ping. “Quantitative study of transcriptome dynamics during evolution and treatment resistance in cancer.” 2016. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/159335.
MLA Handbook (7th Edition):
Chen, Ping. “Quantitative study of transcriptome dynamics during evolution and treatment resistance in cancer.” 2016. Web. 17 Jan 2021.
Vancouver:
Chen P. Quantitative study of transcriptome dynamics during evolution and treatment resistance in cancer. [Internet] [Doctoral dissertation]. University of Helsinki; 2016. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/159335.
Council of Science Editors:
Chen P. Quantitative study of transcriptome dynamics during evolution and treatment resistance in cancer. [Doctoral Dissertation]. University of Helsinki; 2016. Available from: http://hdl.handle.net/10138/159335

University of Helsinki
10.
Jokinen, Riikka.
Genetic Studies of Tissue-Specific Mitochondrial DNA Segregation in Mammals.
Degree: Institute of Biomedicine, Research Programs Unit, Molecular Neurology, 2016, University of Helsinki
URL: http://hdl.handle.net/10138/160103
► Mitochondrial DNA (mtDNA) is a small extra-nuclear genome present in all nucleated cells of the body and important for mitochondrial function. The mtDNA is a…
(more)
▼ Mitochondrial DNA (mtDNA) is a small extra-nuclear genome present in all nucleated cells of the body and important for mitochondrial function. The mtDNA is a present in hundreds to thousands of copies per cell and therefore arising mutations cause heteroplasmy: the co-existence of two or more distinct mtDNA variants in the same cell. Because of these features mtDNA variants segregate mitotically in the tissues of an individual, which can lead to time-dependent changes in the relative proportions of the mtDNA variants.
Mutations in the mtDNA cause diseases and most pathogenic mtDNA mutations are heteroplasmic. In heteroplasmic situations a certain threshold proportion of the mutant mtDNA must be exceeded prior to onset of symptoms. Somatic mtDNA segregation of mtDNA mutations affect whether the threshold is exceeded, and can thus be a factor in determining disease onset and severity. Some pathogenic mtDNA mutations exhibit tissue-specific mtDNA segregation patterns, but the genes and mechanisms involved in this process are unknown. The aim of this thesis was to uncover genetic regulators of tissue-specific mtDNA segregation and study their properties to gain insight into the mechanisms involved in this process.
We investigated tissue-specific mtDNA segregation in a mouse model that segregates two neutral mtDNA variants. These mtDNA variants display tissue-specific mtDNA segregation in three tissue types: the liver, kidney and hematopoietic tissues. In these tissues there is selection for one mtDNA variant over the other. Using this mouse model we identified and verified Gimap3 as a modifying gene for mtDNA segregation in the hematopoietic tissues.
In a follow-up study we further studied Gimap3 and a functionally related gene Gimap5. We uncovered a novel subcellular localization to the endoplasmic reticulum for the Gimap3 protein. Moreover we established Gimap5, which encodes a lysosomal protein, as another genetic modifier of mtDNA segregation in hematopoietic tissues. Taken together these results demonstrated the involvement of other organelles in the segregation of mtDNA.
To study tissue-specific mtDNA segregation from another aspect we investigated the role of mitochondrial fission in this process. Mitochondrial fission has been implicated to play a role in mtDNA segregation in yeast. We utilized a dominant-negative mouse model for Dnm1l, a master regulator of mitochondrial fission. We demonstrated that expression of the dominant-negative Dnm1l modulated the mtDNA segregation specifically in the hematopoietic tissues.
In conclusion, we were able discover the first genetic modifiers for tissue-specific mtDNA segregation in mammals. These findings can be utilized to guide future research aiming to uncover the molecular mechanisms of this process, which can ultimately elucidate the genetics of pathogenic human mtDNA mutations.
Mitokondriot ovat tärkeitä soluelimiä, joita on kaikissa ihmisen soluissa lukuun ottamatta veren punasoluja. Yksi tärkeimmistä mitokondrion monista tehtävistä on aerobinen…
Subjects/Keywords: biomedicine; biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Jokinen, R. (2016). Genetic Studies of Tissue-Specific Mitochondrial DNA Segregation in Mammals. (Doctoral Dissertation). University of Helsinki. Retrieved from http://hdl.handle.net/10138/160103
Chicago Manual of Style (16th Edition):
Jokinen, Riikka. “Genetic Studies of Tissue-Specific Mitochondrial DNA Segregation in Mammals.” 2016. Doctoral Dissertation, University of Helsinki. Accessed January 17, 2021.
http://hdl.handle.net/10138/160103.
MLA Handbook (7th Edition):
Jokinen, Riikka. “Genetic Studies of Tissue-Specific Mitochondrial DNA Segregation in Mammals.” 2016. Web. 17 Jan 2021.
Vancouver:
Jokinen R. Genetic Studies of Tissue-Specific Mitochondrial DNA Segregation in Mammals. [Internet] [Doctoral dissertation]. University of Helsinki; 2016. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10138/160103.
Council of Science Editors:
Jokinen R. Genetic Studies of Tissue-Specific Mitochondrial DNA Segregation in Mammals. [Doctoral Dissertation]. University of Helsinki; 2016. Available from: http://hdl.handle.net/10138/160103

Rutgers University
11.
Zhou, Anbo, 1991-.
Understanding the functional impact of genomic variants.
Degree: PhD, Pipeline, 2020, Rutgers University
URL: https://rucore.libraries.rutgers.edu/rutgers-lib/64813/
► Structural variations (SV) can lead to DNA rearrangements and frequently cause diseases such as neurological disorders. SVs account for more total nucleotide changes and occur…
(more)
▼ Structural variations (SV) can lead to DNA rearrangements and frequently cause diseases such as neurological disorders. SVs account for more total nucleotide changes and occur more frequently than single nucleotide polymorphisms (SNPs) (Stankiewicz and Lupski, 2010). As we continue to gain knowledge, SV has surpassed SNPs in its effects on human evolution, population diversity, and genetic diseases (Stankiewicz and Lupski, 2010). Compared to SNP, SV is more challenging to study due to its complex configuration, large size, and repetitive arrangement. Meanwhile, sequencing technologies including Illumina and Oxford Nanopore sequencing platform are being actively developed to generate sequencing data of human whole genomes, which can then be analyzed to study genetic variations. This series of studies aims to employ contemporary sequencing technologies and computational workflows to unravel the functional impact of SVs.
Good tools are prerequisite to the successful execution of a job. My study starts from developing a pipeline construction tool called PipelineDog that can be used throughout the work. PipelineDog is a web-based integrated development environment (IDE) that represents a novel way to arrange and define workflows while promoting code scalability and reusability. I then apply established tools and workflows to analyze a 192-invidual cohort, surveying the large structural genetic etiology of autism spectrum disorder (ASD) and attention-deficit/hyperactivity disorder (ADHD) co-occurrence. Lastly, the newly commercialized Nanopore sequencing technique was tested and evaluated on both existing and simulated data. The Nanopore sequencing is anticipated to improve the SV identification, as it generates longer reads and will enrich the SV determining evidence. I improved the overall SV identification accuracy by employing a random forest machine learning model to classify the combined dataset from different workflows. This analysis shed light on how to determine which SV identification workflow to use based on specific use cases for future projects.
Advisors/Committee Members: Veerzi, Mikeal (chair), Xing, Jinchuan (co-chair), Brzustowicz, Linda (internal member), Kwan, Kelvin (outside member), School of Graduate Studies.
Subjects/Keywords: Quantitative Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Zhou, Anbo, 1. (2020). Understanding the functional impact of genomic variants. (Doctoral Dissertation). Rutgers University. Retrieved from https://rucore.libraries.rutgers.edu/rutgers-lib/64813/
Chicago Manual of Style (16th Edition):
Zhou, Anbo, 1991-. “Understanding the functional impact of genomic variants.” 2020. Doctoral Dissertation, Rutgers University. Accessed January 17, 2021.
https://rucore.libraries.rutgers.edu/rutgers-lib/64813/.
MLA Handbook (7th Edition):
Zhou, Anbo, 1991-. “Understanding the functional impact of genomic variants.” 2020. Web. 17 Jan 2021.
Vancouver:
Zhou, Anbo 1. Understanding the functional impact of genomic variants. [Internet] [Doctoral dissertation]. Rutgers University; 2020. [cited 2021 Jan 17].
Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/64813/.
Council of Science Editors:
Zhou, Anbo 1. Understanding the functional impact of genomic variants. [Doctoral Dissertation]. Rutgers University; 2020. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/64813/

University of Hawaii – Manoa
12.
Hemrajani, Aashish.
The Dharma of Bums: Identity, Neoliberalism, and Biomedicine in the Practice of Treating Homelessness in Honolulu.
Degree: 2017, University of Hawaii – Manoa
URL: http://hdl.handle.net/10125/51533
► M.A. University of Hawaii at Manoa 2016.
Focusing on Honolulu, the city with the highest rate of homelessness in the United States, this thesis demonstrates…
(more)
▼ M.A. University of Hawaii at Manoa 2016.
Focusing on Honolulu, the city with the highest rate of homelessness in the United States, this thesis demonstrates that the existence of a visibly immiserated population functions materially to create the need for an industry of care and ideologically to serve as an embodied site of difference. Based on long-term ethnographic fieldwork at a transitional shelter and with a student-run free clinic, I examine the process of identity production as it occurs between homeless people and service providers. The public visibility of homelessness leads to the denigration of this population, resulting in a lack of personhood. The process of entering a shelter is viewed as a neoliberal ritual of social reintegration. A free clinic for the homeless demonstrates the on-the-ground process of developing co-relational identities. Finally, a Halloween carnival allows actors to perform the identities and meanings constructed around homelessness in a way that incorporates elements of costume and fantasy.
Subjects/Keywords: Homelessness; Biomedicine; Identity
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
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APA (6th Edition):
Hemrajani, A. (2017). The Dharma of Bums: Identity, Neoliberalism, and Biomedicine in the Practice of Treating Homelessness in Honolulu. (Thesis). University of Hawaii – Manoa. Retrieved from http://hdl.handle.net/10125/51533
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Hemrajani, Aashish. “The Dharma of Bums: Identity, Neoliberalism, and Biomedicine in the Practice of Treating Homelessness in Honolulu.” 2017. Thesis, University of Hawaii – Manoa. Accessed January 17, 2021.
http://hdl.handle.net/10125/51533.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Hemrajani, Aashish. “The Dharma of Bums: Identity, Neoliberalism, and Biomedicine in the Practice of Treating Homelessness in Honolulu.” 2017. Web. 17 Jan 2021.
Vancouver:
Hemrajani A. The Dharma of Bums: Identity, Neoliberalism, and Biomedicine in the Practice of Treating Homelessness in Honolulu. [Internet] [Thesis]. University of Hawaii – Manoa; 2017. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10125/51533.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Hemrajani A. The Dharma of Bums: Identity, Neoliberalism, and Biomedicine in the Practice of Treating Homelessness in Honolulu. [Thesis]. University of Hawaii – Manoa; 2017. Available from: http://hdl.handle.net/10125/51533
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
13.
Stoltsz, Werner Heinrich.
Comparison of resting state functional networks in HIV infected and uninfected children at age 9 years.
Degree: Med, Division of Biomedical Engineering, 2018, University of Cape Town
URL: http://hdl.handle.net/11427/29582
► Over 2.5 million children are infected with HIV, the majority of whom reside in Sub-Saharan Africa. Treatment coverage is steadily gaining momentum, reducing mortality and…
(more)
▼ Over 2.5 million children are infected with HIV, the majority of whom reside in Sub-Saharan Africa. Treatment coverage is steadily gaining momentum, reducing mortality and morbidity. Yet little is known about brain development in HIV-infected (HIV+) children who are on highly-active antiretroviral therapy (ART), with viral load suppression from a young age. Here, we use resting state fMRI (rs-fMRI) to examine the impact of HIV and ART on the development of functional networks in 9-year-old vertically HIV-infected children compared to age-matched controls of similar socioeconomic status. We present analyses for a sample of 40 HIV+ (9.2 ± 0.20 years; 16 males) children from the Children with HIV Early Antiretroviral (CHER) clinical trial (Cotton et al. 2013; Violari et al. 2008) and 24 uninfected (12 exposed; 12 males; 9.6 ± 0.52 years) controls from an interlinking vaccine trial (Madhi et al. 2010). Scans were performed at the Cape Universities Body Imaging Centre (CUBIC) in Cape Town, South Africa. We investigated HIV-related differences in within- and between-network functional connectivity (FC) using independent component analysis(ICA) and seed-based correlation analysis (SCA). For SCA, seeds were placed in the structural core, in regions implicated in HIV-related between-group differences at age 7 years, and in regions associated with neuropsychological domains impaired in our cohort. In addition, we evaluated associations of past and present immune health measures with within-network connectivity using ICA. We found no HIV-related intra-network FC differences within any ICA-generated RSNs at age 9 years, perhaps as a result of within-network connectivity not being sufficiently robust at this age. We found a positive association of CD4%, both current and in infancy, with functional integration of left lobule 7 into the cerebellum network at age 9 years. Long-term impact of early immune health supports recently-revised policies of commencing ART immediately in HIV+ neonates. ii Compared to uninfected children, HIV+ children had increased FC to several seeds. Firstly, to seeds associated with the planning and visual perception neuropsychological domains. Secondly, to structural core seeds in the extrastriate visual cortex (of the medial visual network) and the right angular gyrus (of the temporoparietal network). Finally, to left paracentral (somatosensory network) and right precuneus (posterior DMN) seeds previously revealing between-group differences at age 7 years. The connections with greater FC in HIV+ children may variously indicate functional recruitment of additional brain capacity, immature excess of short-range connections, and/or immature excess of between-network connections. In conclusion, despite early ART and early virologic suppression, HIV+ children demonstrate instances of abnormal FC at age 9 years. Disruption to visual cortex is marked, consistent with indications from neuropsychological testing that visual perception is disrupted. The profile of HIV- and/or ART-related effects on FC differs…
Advisors/Committee Members: Meintjes, Ernesta M (advisor), du Plessis, Lindie (advisor).
Subjects/Keywords: Biomedicine; Biomedical Engineering
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Stoltsz, W. H. (2018). Comparison of resting state functional networks in HIV infected and uninfected children at age 9 years. (Thesis). University of Cape Town. Retrieved from http://hdl.handle.net/11427/29582
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Stoltsz, Werner Heinrich. “Comparison of resting state functional networks in HIV infected and uninfected children at age 9 years.” 2018. Thesis, University of Cape Town. Accessed January 17, 2021.
http://hdl.handle.net/11427/29582.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Stoltsz, Werner Heinrich. “Comparison of resting state functional networks in HIV infected and uninfected children at age 9 years.” 2018. Web. 17 Jan 2021.
Vancouver:
Stoltsz WH. Comparison of resting state functional networks in HIV infected and uninfected children at age 9 years. [Internet] [Thesis]. University of Cape Town; 2018. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/11427/29582.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Stoltsz WH. Comparison of resting state functional networks in HIV infected and uninfected children at age 9 years. [Thesis]. University of Cape Town; 2018. Available from: http://hdl.handle.net/11427/29582
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Texas A&M University
14.
Moore, Cody.
Beyond Biomedicine: Developing New Models of Medical Practice from the Pragmatist and Existentialist Traditions.
Degree: MA, Philosophy, 2012, Texas A&M University
URL: http://hdl.handle.net/1969.1/ETD-TAMU-2012-05-11099
► This thesis seeks to address two distinct sets of criticisms that have been offered at medical practice. The first criticism suggests that medicine today is…
(more)
▼ This thesis seeks to address two distinct sets of criticisms that have been offered at medical practice. The first criticism suggests that medicine today is too exclusive in its application of the term 'disease.' As a consequence, important biological phenomena are marginalized by physicians and scientists. The second criticism suggests that medicine has been too inclusive in its understanding of disease. As a result, many biological phenomena that were once considered 'natural' or 'normal' aspects of human life are now given a medical dimension that they previously did not have.
The goal of this thesis is to understand why two seemingly contradictory criticisms have been applied to the same practice. To answer this question, I invoke Edmund Husserl's important analysis of modern science to argue that medicine suffers from a problem of 'naive objectivism.' This problem is present under the dominant paradigm of medical diagnosis, the biomedical model.
Having identified the source of these two criticisms, my goal is to then develop new models of medical practice that can address these criticisms. First, I turn to John Dewey's philosophical naturalism to develop a medical model that can address the problem of exclusion in
biomedicine. Then, I turn to Martin Heidegger?s existential analytic to develop a medical model that can address the problem of inclusion in
biomedicine. I supplement both of these analyses with research generated in the medical humanities fields, attempting to show how the biomedical model of medicine fails to meet the goals of medical care.
The end result of such analysis is the development of two new medical models that can serve to replace the biomedical model. I offer no attempt to adjudicate between these two models, instead leaving such issues to be handled by the patient and the physician throughout the course of his or her treatment.
Advisors/Committee Members: McDermott, John J. (advisor), George, Theodore D. (committee member), Sanders, Charles W. (committee member).
Subjects/Keywords: Medical Humanities; Existentialism; Pragmatism; Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Moore, C. (2012). Beyond Biomedicine: Developing New Models of Medical Practice from the Pragmatist and Existentialist Traditions. (Masters Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/ETD-TAMU-2012-05-11099
Chicago Manual of Style (16th Edition):
Moore, Cody. “Beyond Biomedicine: Developing New Models of Medical Practice from the Pragmatist and Existentialist Traditions.” 2012. Masters Thesis, Texas A&M University. Accessed January 17, 2021.
http://hdl.handle.net/1969.1/ETD-TAMU-2012-05-11099.
MLA Handbook (7th Edition):
Moore, Cody. “Beyond Biomedicine: Developing New Models of Medical Practice from the Pragmatist and Existentialist Traditions.” 2012. Web. 17 Jan 2021.
Vancouver:
Moore C. Beyond Biomedicine: Developing New Models of Medical Practice from the Pragmatist and Existentialist Traditions. [Internet] [Masters thesis]. Texas A&M University; 2012. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/1969.1/ETD-TAMU-2012-05-11099.
Council of Science Editors:
Moore C. Beyond Biomedicine: Developing New Models of Medical Practice from the Pragmatist and Existentialist Traditions. [Masters Thesis]. Texas A&M University; 2012. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-2012-05-11099

University of Cape Town
15.
Ambler, Jon Mitchell.
Transcription analysis of virulent strains of Mycobacterium tuberculosis.
Degree: Image, Integrative Biomedical Sciences, 2018, University of Cape Town
URL: http://hdl.handle.net/11427/28434
► Background: Despite the development of new drugs and success of social programs, tuberculosis remains a leading cause of mortality. This burden falls disproportionately on developing…
(more)
▼ Background: Despite the development of new drugs and success of social programs, tuberculosis remains a leading cause of mortality. This burden falls disproportionately on developing countries where the high burden of HIV has a potentiating e↵ect, but may soon return to areas where it was previously brought under control as resistant strains continue to emerge. In the Western Cape, two closely related strains of the Beijing family have been isolated that provide an opportunity to study virulence in a system with relatively little noise. The aim of this project was to identify the cause of the altered virulence displayed between the two strains, and describe how the di↵erences between the two genomes contributed to the phenotypic di↵erences. Results: GenGraph allows for the creation of graph genomes, and facilitated the creation of a pan-transcriptome that allowed for the mapping of gene annotations between isolates. This allowed for the mapping of reads to a more suitable Beijing family reference while interpreting the results with annotations from the H37Rv reference. We generated expression and target profiles for the known sRNA, and identified a large number of novel sRNA. Transcriptomic data from 4 di↵erent growth conditions was integrated with this sRNA data as well as variant data using the Cell pipeline. From this data we identified multiple sets of genes linked to copper sensing in MTB, including the di↵erentially expressed MoCo operon. Increasing evidence that macrophages use copper to poison bacteria trapped in their phagosomes provides the link to virulence and pathogenicity. Conclusions: Through the integration of data from multiple data types we were able to elucidate the most probable cause of the altered virulence found between the two isolates in this study. We developed reusable tools and pipelines, and noted a large number of undescribed sRNA expressed in these isolates. The identification of the copper response as a chief contributor to the phenotype increases both our understanding of the isolates, and the role of the element in infection. These results will be key in guiding further investigation of the variant linked genes to identify those linked to copper homeostasis or response.
Advisors/Committee Members: Mulder, Nicola (advisor).
Subjects/Keywords: integrative biomedicine; mycobacterium tuberculosis
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
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APA (6th Edition):
Ambler, J. M. (2018). Transcription analysis of virulent strains of Mycobacterium tuberculosis. (Thesis). University of Cape Town. Retrieved from http://hdl.handle.net/11427/28434
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Ambler, Jon Mitchell. “Transcription analysis of virulent strains of Mycobacterium tuberculosis.” 2018. Thesis, University of Cape Town. Accessed January 17, 2021.
http://hdl.handle.net/11427/28434.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Ambler, Jon Mitchell. “Transcription analysis of virulent strains of Mycobacterium tuberculosis.” 2018. Web. 17 Jan 2021.
Vancouver:
Ambler JM. Transcription analysis of virulent strains of Mycobacterium tuberculosis. [Internet] [Thesis]. University of Cape Town; 2018. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/11427/28434.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Ambler JM. Transcription analysis of virulent strains of Mycobacterium tuberculosis. [Thesis]. University of Cape Town; 2018. Available from: http://hdl.handle.net/11427/28434
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Manchester
16.
Florez Vargas, Oscar Roberto.
DEVELOPMENT OF STRATEGIES FOR ASSESSING REPORTING IN
BIOMEDICAL RESEARCH: MOVING TOWARD ENHANCING
REPRODUCIBILITY.
Degree: 2016, University of Manchester
URL: http://www.manchester.ac.uk/escholar/uk-ac-man-scw:302324
► The idea that the same experimental findings can be reproduced by a variety of independent approaches is one of the cornerstones of science’s claim to…
(more)
▼ The idea that the same experimental findings can be
reproduced by a variety of independent approaches is one of the
cornerstones of science’s claim to objective truth. However, in
recent years, it has become clear that science is plagued by
findings that cannot be reproduced and, consequently, invalidating
research studies and undermining public trust in the research
enterprise. The observed lack of reproducibility may be a result,
among other things, of the lack of transparency or completeness in
reporting. In particular, omissions in reporting the technical
nature of the experimental method make it difficult to verify the
findings of experimental research in
biomedicine. In this context,
the assessment of scientific reports could help to overcome – at
least in part – the ongoing reproducibility crisis.In addressing
this issue, this Thesis undertakes the challenge of developing
strategies for the evaluation of reporting biomedical experimental
methods in scientific manuscripts. Considering the complexity of
experimental design – often involving different technologies and
models, we characterise the problem in methods reporting through
domain-specific checklists. Then, by using checklists as a decision
making tool, supported by miniRECH – a spreadsheet-based approach
that can be used by authors, editors and peer-reviewers – a
reasonable level of consensus on reporting assessments was achieved
regardless of the domain-specific expertise of referees. In
addition, by using a text-mining system as a screening tool, a
framework to guide an automated assessment of the reporting of
bio-experiments was created. The usefulness of these strategies was
demonstrated in some domain-specific scientific areas as well as in
mouse models across biomedical research.In conclusion, we suggested
that the strategies developed in this work could be implemented
through the publication process as barriers to prevent incomplete
reporting from entering the scientific literature, as well as
promoters of completeness in reporting to improve the general value
of the scientific evidence.
Advisors/Committee Members: STEVENS, ROBERT RD, Brass, Andrew, Stevens, Robert.
Subjects/Keywords: Reproducibility; Checklists; Text Mining; Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Florez Vargas, O. R. (2016). DEVELOPMENT OF STRATEGIES FOR ASSESSING REPORTING IN
BIOMEDICAL RESEARCH: MOVING TOWARD ENHANCING
REPRODUCIBILITY. (Doctoral Dissertation). University of Manchester. Retrieved from http://www.manchester.ac.uk/escholar/uk-ac-man-scw:302324
Chicago Manual of Style (16th Edition):
Florez Vargas, Oscar Roberto. “DEVELOPMENT OF STRATEGIES FOR ASSESSING REPORTING IN
BIOMEDICAL RESEARCH: MOVING TOWARD ENHANCING
REPRODUCIBILITY.” 2016. Doctoral Dissertation, University of Manchester. Accessed January 17, 2021.
http://www.manchester.ac.uk/escholar/uk-ac-man-scw:302324.
MLA Handbook (7th Edition):
Florez Vargas, Oscar Roberto. “DEVELOPMENT OF STRATEGIES FOR ASSESSING REPORTING IN
BIOMEDICAL RESEARCH: MOVING TOWARD ENHANCING
REPRODUCIBILITY.” 2016. Web. 17 Jan 2021.
Vancouver:
Florez Vargas OR. DEVELOPMENT OF STRATEGIES FOR ASSESSING REPORTING IN
BIOMEDICAL RESEARCH: MOVING TOWARD ENHANCING
REPRODUCIBILITY. [Internet] [Doctoral dissertation]. University of Manchester; 2016. [cited 2021 Jan 17].
Available from: http://www.manchester.ac.uk/escholar/uk-ac-man-scw:302324.
Council of Science Editors:
Florez Vargas OR. DEVELOPMENT OF STRATEGIES FOR ASSESSING REPORTING IN
BIOMEDICAL RESEARCH: MOVING TOWARD ENHANCING
REPRODUCIBILITY. [Doctoral Dissertation]. University of Manchester; 2016. Available from: http://www.manchester.ac.uk/escholar/uk-ac-man-scw:302324

Rutgers University
17.
Hansen, William Alexander.
Multi-scale protein design utilzing symmetry.
Degree: PhD, Protein design, 2020, Rutgers University
URL: https://rucore.libraries.rutgers.edu/rutgers-lib/64372/
► Despite significant advances in the field of computational protein modeling and design, the prediction of de novo metal-coordination and supramolecular assembly remains a largely unexplored…
(more)
▼ Despite significant advances in the field of computational protein modeling and design, the prediction of de novo metal-coordination and supramolecular assembly remains a largely unexplored area of bottom-up design. The computational tools and methods outlined in this dissertation are intended to reduce design complexity, promote a generalizable design framework, and lay the groundwork for the development of de novo metal-coordination and supramolecular assembly.
Thirty percent of proteins in Nature, by estimation, contain metal binding sites and these exhibit a diverse array of structural and functional utility. Among them, multi-nuclear metal clusters perform the most exquisite chemistry such as water oxidation, hydrogenation, and nitrogen fixation. In order to harness the catalytic potential of multi-nuclear metal clusters, we propose a general method for the design of multi-nuclear metalloprotein protein precursors, one that exploits the benefits of symmetric coordination and polydentate non-canonical amino acid derivatives. We have developed a computational searching algorithm (SyPRIS) to locate within a library of structurally determined symmetric protein oligomers a constellation of backbone atoms with a geometry compatible with a desired metal cluster. SyPRIS is shown to have 100% accuracy in the prediction of the native metal-binding sites of known symmetrically coordinated metal ions at the interface of oligomeric proteins (C2 and C3). Furthermore, in a crossmatch study of the benchmark structures, more than 1000 novel metal binding sites with native-like scores are predicted, suggesting the utility of SyPRIS for the incorporation of non-native amino acid coordination of a desired complex.
In order to complement the benefits that symmetry offers for reducing design complexity, we sought to expand the palette of available biocompatible non-native amino acid derivatives. A two-step synthesis provides a high-metal affinity bioconjugatable unit, 2,2’-(ethene-1,1-diyl)bis(1-methyl-1H-imidazole) or BMIE. Direct attachement of BMIE occurs by thiol-selective conjugate addition on the surface of a carboxypeptidase G2 variant (S203C). Additionally, we find that BMIE adducts can bind an assortment of divalent metal ions (Co, Ni, Cu, and Zn) in various bi- and tri-dentate tetragonal coordination geometries. Non-BMIE coordinated positions of the copper-bound modified protein display lability in the presence of several counter ligands (H2O/OH, tris, and phenanthroline), which highlights the potential for future catalytic applications. The site-selective modification of proteins for high-affinity metal-binding, combined with the ease of adduct formation and metalation make BMIE an attractive tool to augment multi-nuclear metalloprotein design.
The design of protein-based assembly is a burgeoning field with applications in
biomedicine and bioremediation. However, topologies have been limited to integer-dimensions. Additionally, many questions remain with respect to the impact of protein anisotropy, colocalization on…
Advisors/Committee Members: Khare, Sagar D (chair), Izgu, Enver C (internal member), Nanda, Vikas (internal member), Knapp, Spencer (outside member), School of Graduate Studies.
Subjects/Keywords: Protein engineering; Quantitative Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Hansen, W. A. (2020). Multi-scale protein design utilzing symmetry. (Doctoral Dissertation). Rutgers University. Retrieved from https://rucore.libraries.rutgers.edu/rutgers-lib/64372/
Chicago Manual of Style (16th Edition):
Hansen, William Alexander. “Multi-scale protein design utilzing symmetry.” 2020. Doctoral Dissertation, Rutgers University. Accessed January 17, 2021.
https://rucore.libraries.rutgers.edu/rutgers-lib/64372/.
MLA Handbook (7th Edition):
Hansen, William Alexander. “Multi-scale protein design utilzing symmetry.” 2020. Web. 17 Jan 2021.
Vancouver:
Hansen WA. Multi-scale protein design utilzing symmetry. [Internet] [Doctoral dissertation]. Rutgers University; 2020. [cited 2021 Jan 17].
Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/64372/.
Council of Science Editors:
Hansen WA. Multi-scale protein design utilzing symmetry. [Doctoral Dissertation]. Rutgers University; 2020. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/64372/
18.
Silva, Mônica Freitas da.
Engenharia de superfície de nanopartículas magnéticas para biomedicina: recobrimentos com macromoléculas visando estabilização e compatibilidade em meio fisiológico.
Degree: Mestrado, Físico-Química, 2013, University of São Paulo
URL: http://www.teses.usp.br/teses/disponiveis/75/75134/tde-23042013-105323/
;
► Nanoparticulas magnéticas de óxido de ferro tem sido amplamente utilizadas em diversas áreas da biotecnologia e biomedicina, tais como no tratamento de câncer, marcação de…
(more)
▼ Nanoparticulas magnéticas de óxido de ferro tem sido amplamente utilizadas em diversas áreas da biotecnologia e biomedicina, tais como no tratamento de câncer, marcação de célula e como agentes de contraste em imagem por ressonância magnética. O intuito deste trabalho foi sintetizar as nanopartículas magnéticas com magnetização de saturação intensificadas via processo do poliol modificado, e usando agentes de superfície para melhorar as propriedades de superfície. Carboximetildextrana, metilpolietilenoglicol (MPEG), quitosana, sílica e 3-aminopropiltrimetoxisilano (APTMS) foram utilizados para a modificação da superfície. Através da microscopia eletrônica de transmissão (TEM), foi obtido que as nanopartículas magnéticas de magnetita obtiveram um diâmetro médio de 5nm, em uma estreita distribuição de tamanho. A difração de raios-X (DRX) indicou a formação de magnetita em todos os sistemas em que o método do poliol modificado foi utilizado. As medidas de espectroscopia no infravermelho (FTIR) evidenciaram a presença de modos de vibração relacionados às macromoléculas e compostos inorgânicos utilizados na modificação de superfície das nanopartículas magnéticas. A TEM das diferentes modificações de superfície mostram a formação de aglomerados dependendo do modificador utilizado. As nanopartículas recobertas com APTMS foram funcionalizadas com ácido fólico, mostrando resultados satisfatórios, porém serão necessárias outras técnicas de caracterização. Para a funcionalização foi determinada a quantidade de amina livre na superfície da nanopartícula recoberta com APTMS e a técnica de UV-Vis determinou um bom resultado. A magnetometria de amostra vibrante (VSM) mostrou comportamentos semelhantes para todas as amostras recobertas em comparação a amostra sem recobrimento. Estes resultados evidenciam que a modificação de superfície foi realizada satisfatoriamente. Os métodos utilizados para realizar a mudança para hidrofóbica a superfície inicialmente hidrofílica se mostraram efetivos, porém a quantidade de agentes modificadores deve ser melhor estudada. Portanto, as nanopartículas magnéticas funcionalizadas com diferentes superfícies foram obtidas e possuem um alto potencial para serem utilizadas em aplicações em biomedicina.
Superparamagnetic iron oxides nanoparticles (SPION) have been highlighted in several areas of biotechnology and biomedicine, for example in cancer treatment, in labeling of cells and as contrast agent in magnetic resonance imaging (MRI). The purpose of this study was synthesizing SPION with intensified saturation magnetization by modified polyol process, and using surface agents to enhance the surface properties. Carboxymethildextran, metylpolietileneglycol, chitosan, silica and 3-aminopropyltrimethoxysilane (APTMS) were utilized as surface modifiers. By transmission electron microscopy (TEM), SPION showed narrow particle size distribution, with an average diameter around 5 nm. The X-ray diffraction studies indicated the formation of magnetite in all synthesized systems in which the modified polyol…
Advisors/Committee Members: Varanda, Laudemir Carlos.
Subjects/Keywords: biomedicina; biomedicine; macromoléculas; macromolecules; nanoparticles; nanopartículas
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Silva, M. F. d. (2013). Engenharia de superfície de nanopartículas magnéticas para biomedicina: recobrimentos com macromoléculas visando estabilização e compatibilidade em meio fisiológico. (Masters Thesis). University of São Paulo. Retrieved from http://www.teses.usp.br/teses/disponiveis/75/75134/tde-23042013-105323/ ;
Chicago Manual of Style (16th Edition):
Silva, Mônica Freitas da. “Engenharia de superfície de nanopartículas magnéticas para biomedicina: recobrimentos com macromoléculas visando estabilização e compatibilidade em meio fisiológico.” 2013. Masters Thesis, University of São Paulo. Accessed January 17, 2021.
http://www.teses.usp.br/teses/disponiveis/75/75134/tde-23042013-105323/ ;.
MLA Handbook (7th Edition):
Silva, Mônica Freitas da. “Engenharia de superfície de nanopartículas magnéticas para biomedicina: recobrimentos com macromoléculas visando estabilização e compatibilidade em meio fisiológico.” 2013. Web. 17 Jan 2021.
Vancouver:
Silva MFd. Engenharia de superfície de nanopartículas magnéticas para biomedicina: recobrimentos com macromoléculas visando estabilização e compatibilidade em meio fisiológico. [Internet] [Masters thesis]. University of São Paulo; 2013. [cited 2021 Jan 17].
Available from: http://www.teses.usp.br/teses/disponiveis/75/75134/tde-23042013-105323/ ;.
Council of Science Editors:
Silva MFd. Engenharia de superfície de nanopartículas magnéticas para biomedicina: recobrimentos com macromoléculas visando estabilização e compatibilidade em meio fisiológico. [Masters Thesis]. University of São Paulo; 2013. Available from: http://www.teses.usp.br/teses/disponiveis/75/75134/tde-23042013-105323/ ;

Penn State University
19.
Tabakovic, Amra.
Investigation of Laundering and Dispersion Approaches for Silica and Calcium Phosphosilicate Nanoparticles Synthesized in Reverse Micelles.
Degree: 2015, Penn State University
URL: https://submit-etda.libraries.psu.edu/catalog/26559
► Nanotechnology, the science and engineering of materials at the nanoscale, is a booming research area with numerous applications in electronic, cosmetic, automotive and sporting goods…
(more)
▼ Nanotechnology, the science and engineering of materials at the nanoscale, is a booming research area with numerous applications in electronic, cosmetic, automotive and sporting goods industries, as well as in
biomedicine. Composite nanoparticles (NPs) are of special interest since the use of two or more materials in NP design imparts multifunctionality on the final NP constructs. This is especially relevant for applications in areas of human healthcare, where the use of dye or drug doped composite NPs is expected to improve the diagnosis and treatment of cancer and other serious illnesses. Since the physicochemical properties of NP suspensions dictate the success of these systems in biomedical applications, especially drug delivery of chemotherapeutics, synthetic routes which offer precise control of NP properties, especially particle diameter and colloidal stability, are utilized to form a variety of composite NPs. Formation of NPs in reverse, or water-in-oil, micelles is one such synthetic approach. However, while the use of reverse micelles to form composite NPs offers precise control over NP size and shape, the post-synthesis laundering and dispersion of synthesized NP suspensions can still be a challenge. Reverse micelle synthetic approaches require the use of surfactants and low dielectric constant solvents, like hexane and cyclohexane, as the oil phase, which can compromise the biocompatibility and colloidal stability of the final composite NP suspensions. Therefore, appropriate dispersants and solvents must be used during laundering and dispersion to remove surfactant and ensure stability of synthesized NPs. In the work presented in this dissertation, two laundering and dispersion approaches, including packed column high performance liquid chromatography (HPLC) and centrifugation (sedimentation and redispersion), are investigated for silver core silica (Ag-SiO2) and calcium phosphosilicate (Caw(HxPO4)y(Si(OH)zOa)b.cH2O, CPS) composite NP suspensions synthesized in a cyclohexane/ polyoxyethylene (5) nonylphenylether (Igepal® CO-520) /water reverse micelle system.
In Chapter 3, an HPLC laundering and dispersion approach for Ag-SiO2 composite NPs is studied. The deposition and detachment behavior of 5 w/w 3- aminopropyltriethoxy silane (APTES) dispersed Ag-SiO2 suspensions on 1 w/o, 5 w/o and 15 w/o APTES treated SiO2 column stationary phase microspheres is investigated with respect to final % mass yields for collected NP suspensions. Field emission scanning electron microscopy (FESEM) studies confirm multilayer deposition of Ag-SiO2 NPs during loading and retention on the column during laundering stages of the process independent of w/o APTES treatment on stationary phase microspheres, with individual deposited Ag-SiO2 NPs observed to be in the 20-30 nm diameter range. Patchy deposition patterns and irreversible agglomeration are also confirmed via FESEM, as fractions of loaded Ag-SiO2 NPs remain attached on the 1 w/o, 5 w/o and 15 w/o APTES stationary phases after completion of the collecting…
Advisors/Committee Members: James Hansell Adair, Dissertation Advisor/Co-Advisor, Gary Lynn Messing, Committee Member, Gail Lynn Matters, Committee Member, Christine Dolan Keating, Committee Member.
Subjects/Keywords: Nanoparticles; nanoparticle laundering; nanotechnology; biomedicine; drug delivery
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Tabakovic, A. (2015). Investigation of Laundering and Dispersion Approaches for Silica and Calcium Phosphosilicate Nanoparticles Synthesized in Reverse Micelles. (Thesis). Penn State University. Retrieved from https://submit-etda.libraries.psu.edu/catalog/26559
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Tabakovic, Amra. “Investigation of Laundering and Dispersion Approaches for Silica and Calcium Phosphosilicate Nanoparticles Synthesized in Reverse Micelles.” 2015. Thesis, Penn State University. Accessed January 17, 2021.
https://submit-etda.libraries.psu.edu/catalog/26559.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Tabakovic, Amra. “Investigation of Laundering and Dispersion Approaches for Silica and Calcium Phosphosilicate Nanoparticles Synthesized in Reverse Micelles.” 2015. Web. 17 Jan 2021.
Vancouver:
Tabakovic A. Investigation of Laundering and Dispersion Approaches for Silica and Calcium Phosphosilicate Nanoparticles Synthesized in Reverse Micelles. [Internet] [Thesis]. Penn State University; 2015. [cited 2021 Jan 17].
Available from: https://submit-etda.libraries.psu.edu/catalog/26559.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Tabakovic A. Investigation of Laundering and Dispersion Approaches for Silica and Calcium Phosphosilicate Nanoparticles Synthesized in Reverse Micelles. [Thesis]. Penn State University; 2015. Available from: https://submit-etda.libraries.psu.edu/catalog/26559
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Victoria University
20.
Porter, Sandra.
An exploration of the support needs of ambulance paramedics.
Degree: phd, College of Health and Biomedicine, 2013, Victoria University
URL: http://vuir.vu.edu.au/22296/
► The work of ambulance paramedics is usually physically and emotionally draining and can place significant amounts of pressure on the emergency service worker. The work…
(more)
▼ The work of ambulance paramedics is usually physically and emotionally draining and can place significant amounts of pressure on the emergency service worker. The work they do can impact their social life, their family and ultimately, their health. The primary aim of this research was to explore the psychological and social coping strategies of ambulance paramedics, in dealing with the day to day aspects of their work in the context of their long term health and well-being. A secondary aim was to examine the use of current peer support programs and other referral services used by paramedics. This study was a qualitative exploration of the experiences of ambulance paramedics through interviewing. Qualitative research has allowed the researcher to capture the stories of individuals, in their own words. This study included nine novice paramedics (first year) and 12 longer term employed (five plus years) paramedics within Rural Ambulance Victoria. Participants were also recruited to reflect the gender ratio in the paramedic workforce.
Subjects/Keywords: 1701 Psychology; College of Health and Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Porter, S. (2013). An exploration of the support needs of ambulance paramedics. (Doctoral Dissertation). Victoria University. Retrieved from http://vuir.vu.edu.au/22296/
Chicago Manual of Style (16th Edition):
Porter, Sandra. “An exploration of the support needs of ambulance paramedics.” 2013. Doctoral Dissertation, Victoria University. Accessed January 17, 2021.
http://vuir.vu.edu.au/22296/.
MLA Handbook (7th Edition):
Porter, Sandra. “An exploration of the support needs of ambulance paramedics.” 2013. Web. 17 Jan 2021.
Vancouver:
Porter S. An exploration of the support needs of ambulance paramedics. [Internet] [Doctoral dissertation]. Victoria University; 2013. [cited 2021 Jan 17].
Available from: http://vuir.vu.edu.au/22296/.
Council of Science Editors:
Porter S. An exploration of the support needs of ambulance paramedics. [Doctoral Dissertation]. Victoria University; 2013. Available from: http://vuir.vu.edu.au/22296/

Victoria University
21.
Trpcevska, Lidija.
Predictors of psychological well-being, academic self-efficacy and resilience in university students, and their impact on academic motivation.
Degree: other, College of Health and Biomedicine, 2017, Victoria University
URL: http://vuir.vu.edu.au/34676/
► Compared to the general population, higher education students report elevated levels of psychological distress, with symptoms of and criteria for serious mental illness also being…
(more)
▼ Compared to the general population, higher education students report elevated levels of psychological distress, with symptoms of and criteria for serious mental illness also being higher. Tertiary education marks a time in life of high levels of change and stress. Despite these difficulties, many students continue to succeed in their studies. One factor that has been shown to contribute to, and predict academic success is motivation. The current study aims to explore factors which contribute to psychological well-being, academic self-efficacy and resilience in students and their impact on motivation. Victoria University students (N=163) completed a survey of demographic questions and a variety of measures including locus of control, spirituality, perceived stress, academic self-efficacy, psychological well-being, resilience and motivation. Regression analyses using the bootstrapped method were conducted to explore relationships. Psychological well-being, academic self-efficacy and resilience jointly predicted motivation. Individually, however, academic self-efficacy, depression and resilience each contributed to extrinsic motivation; depression, academic self-efficacy, resilience and stress each predicted amotivation; while only academic self-efficacy was a significant predictor of intrinsic motivation. Lower scores on perception of stress were predicted by an internal locus of control and higher levels of spirituality, while higher levels of perceived stress were predictive of lower levels of psychological well-being. Perception of stress was a significant mediator between locus of control and psychological well-being, as well as spirituality and psychological well-being. Depression also mediated the relationship between perception of stress and amotivation. Measurement issues and implications of the findings are discussed.
Subjects/Keywords: 1701 Psychology; College of Health and Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Trpcevska, L. (2017). Predictors of psychological well-being, academic self-efficacy and resilience in university students, and their impact on academic motivation. (Thesis). Victoria University. Retrieved from http://vuir.vu.edu.au/34676/
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Trpcevska, Lidija. “Predictors of psychological well-being, academic self-efficacy and resilience in university students, and their impact on academic motivation.” 2017. Thesis, Victoria University. Accessed January 17, 2021.
http://vuir.vu.edu.au/34676/.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Trpcevska, Lidija. “Predictors of psychological well-being, academic self-efficacy and resilience in university students, and their impact on academic motivation.” 2017. Web. 17 Jan 2021.
Vancouver:
Trpcevska L. Predictors of psychological well-being, academic self-efficacy and resilience in university students, and their impact on academic motivation. [Internet] [Thesis]. Victoria University; 2017. [cited 2021 Jan 17].
Available from: http://vuir.vu.edu.au/34676/.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Trpcevska L. Predictors of psychological well-being, academic self-efficacy and resilience in university students, and their impact on academic motivation. [Thesis]. Victoria University; 2017. Available from: http://vuir.vu.edu.au/34676/
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Victoria University
22.
Quinn, Melanie.
Psychosocial Outcomes and Predictors of Distress Among Military Spouses.
Degree: other, College of Health and Biomedicine, 2017, Victoria University
URL: http://vuir.vu.edu.au/35043/
► The current research aimed to further investigate the nature and extent of psychological distress among Australian Defence Force spouses, predictors of such distress, and the…
(more)
▼ The current research aimed to further investigate the nature and extent of psychological distress among Australian Defence Force spouses, predictors of such distress, and the protective factors that moderate these negative effects, using internationally validated methods. This study used Lazarus and Folkman’s (1984) theory of stress and coping as an overarching theoretical framework. A sample of spouses (n = 184) completed an online self-report instrument that assessed psychological distress, depression, anxiety and stress, quality of sleep, barriers to care, and levels of perceived social support. Consistent with hypotheses, multiple regression analyses showed that military spouses reported significantly higher rates of distress and significantly poorer sleep quality than rates reported in the general Australian population. Higher rates of depression were predicted by greater discrepancy between emotional support received than was desired, greater discrepancy between practical support received than was desired, and current deployment status of the service partner. High rates of anxiety were predicted by the total number of barriers to care endorsed by spouses. Poorer sleep quality was predicted by more discrepancy between practical support received than was desired. Contrary to hypotheses, military risk factors of the duration of service for the ADF partner and amount of times deployed did not predict psychological distress. Similarly, barriers to care and self-stigma of help-seeking did not moderate the association between the discrepancy between emotional support received than was desired and psychological distress outcomes. Findings indicated that military spouses are a vulnerable population group with high rates of distress and sleep difficulties. Spouses are impacted by stressors such as the current deployment of the service partner and help-seeking efforts are impeded by deficient access to supports, and barriers to care. Clinical implications are discussed, including the need to design appropriate interventions to specifically address the psychological implications of the demands placed on military spouses. – – - Running title: Psychosocial outcomes of miltary spouses
Subjects/Keywords: 1701 Psychology; College of Health and Biomedicine
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Quinn, M. (2017). Psychosocial Outcomes and Predictors of Distress Among Military Spouses. (Thesis). Victoria University. Retrieved from http://vuir.vu.edu.au/35043/
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Quinn, Melanie. “Psychosocial Outcomes and Predictors of Distress Among Military Spouses.” 2017. Thesis, Victoria University. Accessed January 17, 2021.
http://vuir.vu.edu.au/35043/.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Quinn, Melanie. “Psychosocial Outcomes and Predictors of Distress Among Military Spouses.” 2017. Web. 17 Jan 2021.
Vancouver:
Quinn M. Psychosocial Outcomes and Predictors of Distress Among Military Spouses. [Internet] [Thesis]. Victoria University; 2017. [cited 2021 Jan 17].
Available from: http://vuir.vu.edu.au/35043/.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Quinn M. Psychosocial Outcomes and Predictors of Distress Among Military Spouses. [Thesis]. Victoria University; 2017. Available from: http://vuir.vu.edu.au/35043/
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Deakin University
23.
Li, Rui.
Designing self-assembled multicomponent scaffolds for regenerative medicine.
Degree: School of Life and Environmental Sciences, 2016, Deakin University
URL: http://hdl.handle.net/10536/DRO/DU:30089380
► This project demonstrated novel approaches to incorporate multiple bioactive peptide sequences polysaccharides and proteoglycans. Demonstrated applications for both in vitro 3D cell culture and in…
(more)
▼ This project demonstrated novel approaches to incorporate multiple bioactive peptide sequences polysaccharides and proteoglycans. Demonstrated applications for both in vitro 3D cell culture and in vivo applications; highlighting the significance of this class of biomaterial for a range of therapeutic applications and use as a new generation of regenerative materials.
Advisors/Committee Members: Barrow, Colin, Williams, Richard J., Stupka Nicole.
Subjects/Keywords: Biomedicine; Biomaterials; Tissue engineering; Therapeutic medicine; Peptides
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Li, R. (2016). Designing self-assembled multicomponent scaffolds for regenerative medicine. (Thesis). Deakin University. Retrieved from http://hdl.handle.net/10536/DRO/DU:30089380
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Li, Rui. “Designing self-assembled multicomponent scaffolds for regenerative medicine.” 2016. Thesis, Deakin University. Accessed January 17, 2021.
http://hdl.handle.net/10536/DRO/DU:30089380.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Li, Rui. “Designing self-assembled multicomponent scaffolds for regenerative medicine.” 2016. Web. 17 Jan 2021.
Vancouver:
Li R. Designing self-assembled multicomponent scaffolds for regenerative medicine. [Internet] [Thesis]. Deakin University; 2016. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10536/DRO/DU:30089380.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Li R. Designing self-assembled multicomponent scaffolds for regenerative medicine. [Thesis]. Deakin University; 2016. Available from: http://hdl.handle.net/10536/DRO/DU:30089380
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Illinois – Chicago
24.
Habans, Robert A.
The Urban Biomedical District: Health Care and Economic Development in American Cities.
Degree: 2017, University of Illinois – Chicago
URL: http://hdl.handle.net/10027/21783
► To date, little scholarship has directly examined health care as both a distinctive, complex institution and a motive force in the economies of cities. This…
(more)
▼ To date, little scholarship has directly examined health care as both a distinctive, complex institution and a motive force in the economies of cities. This dissertation focuses on a phenomenon at the intersection between urban development and the transformation of the health care system: concentrations of hospitals, academic medical centers, and other related land uses in close proximity. Variations of this phenomenon – which I define as the "urban biomedical district" – have become increasingly prominent features of the urban landscape, focal points for organizational adaptations to a changing regulatory environment, and strategic targets of planning and economic development policy.
Empirically, the research begins with the first formal establishment of development districts that combined multiple health care institutions in Chicago and Houston in the 1940s. The comparison then extends toward the contemporary transformation of the biomedical district into a multi-faceted urban economic engine, and ecosystem for innovation, and a model that has been replicated to varying extends across a range of different urban contexts. This process is examined primarily through a third case study of New Orleans, where long-standing aspirations to create a thriving biomedical corridor on the edge of downtown shaped a sequence of landmark decisions over the future of the city's economy and safety-net health care system after Hurricane Katrina.
Advisors/Committee Members: Weber, Rachel (advisor), Drucker, Joshua (committee member), McInerney, Paul-Brian (committee member), Winkle, Curtis (committee member), Theodore, Nik (committee member), Weber, Rachel (chair).
Subjects/Keywords: urban planning; biomedicine; economic development; health care
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Habans, R. A. (2017). The Urban Biomedical District: Health Care and Economic Development in American Cities. (Thesis). University of Illinois – Chicago. Retrieved from http://hdl.handle.net/10027/21783
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Habans, Robert A. “The Urban Biomedical District: Health Care and Economic Development in American Cities.” 2017. Thesis, University of Illinois – Chicago. Accessed January 17, 2021.
http://hdl.handle.net/10027/21783.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Habans, Robert A. “The Urban Biomedical District: Health Care and Economic Development in American Cities.” 2017. Web. 17 Jan 2021.
Vancouver:
Habans RA. The Urban Biomedical District: Health Care and Economic Development in American Cities. [Internet] [Thesis]. University of Illinois – Chicago; 2017. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10027/21783.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Habans RA. The Urban Biomedical District: Health Care and Economic Development in American Cities. [Thesis]. University of Illinois – Chicago; 2017. Available from: http://hdl.handle.net/10027/21783
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
25.
Florez Vargas, Oscar.
Development of strategies for assessing reporting in biomedical research : moving toward enhancing reproducibility.
Degree: PhD, 2016, University of Manchester
URL: https://www.research.manchester.ac.uk/portal/en/theses/development-of-strategies-for-assessing-reporting-in-biomedical-research-moving-toward-enhancing-reproducibility(f51f1623-61f7-4aa8-8e56-868db8d60e7a).html
;
https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.727921
► The idea that the same experimental findings can be reproduced by a variety of independent approaches is one of the cornerstones of science's claim to…
(more)
▼ The idea that the same experimental findings can be reproduced by a variety of independent approaches is one of the cornerstones of science's claim to objective truth. However, in recent years, it has become clear that science is plagued by findings that cannot be reproduced and, consequently, invalidating research studies and undermining public trust in the research enterprise. The observed lack of reproducibility may be a result, among other things, of the lack of transparency or completeness in reporting. In particular, omissions in reporting the technical nature of the experimental method make it difficult to verify the findings of experimental research in biomedicine. In this context, the assessment of scientific reports could help to overcome - at least in part - the ongoing reproducibility crisis. In addressing this issue, this Thesis undertakes the challenge of developing strategies for the evaluation of reporting biomedical experimental methods in scientific manuscripts. Considering the complexity of experimental design - often involving different technologies and models, we characterise the problem in methods reporting through domain-specific checklists. Then, by using checklists as a decision making tool, supported by miniRECH - a spreadsheet-based approach that can be used by authors, editors and peer-reviewers - a reasonable level of consensus on reporting assessments was achieved regardless of the domain-specific expertise of referees. In addition, by using a text-mining system as a screening tool, a framework to guide an automated assessment of the reporting of bio-experiments was created. The usefulness of these strategies was demonstrated in some domain-specific scientific areas as well as in mouse models across biomedical research. In conclusion, we suggested that the strategies developed in this work could be implemented through the publication process as barriers to prevent incomplete reporting from entering the scientific literature, as well as promoters of completeness in reporting to improve the general value of the scientific evidence.
Subjects/Keywords: 610.72; Biomedicine; Checklists; Reproducibility; Text Mining
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Florez Vargas, O. (2016). Development of strategies for assessing reporting in biomedical research : moving toward enhancing reproducibility. (Doctoral Dissertation). University of Manchester. Retrieved from https://www.research.manchester.ac.uk/portal/en/theses/development-of-strategies-for-assessing-reporting-in-biomedical-research-moving-toward-enhancing-reproducibility(f51f1623-61f7-4aa8-8e56-868db8d60e7a).html ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.727921
Chicago Manual of Style (16th Edition):
Florez Vargas, Oscar. “Development of strategies for assessing reporting in biomedical research : moving toward enhancing reproducibility.” 2016. Doctoral Dissertation, University of Manchester. Accessed January 17, 2021.
https://www.research.manchester.ac.uk/portal/en/theses/development-of-strategies-for-assessing-reporting-in-biomedical-research-moving-toward-enhancing-reproducibility(f51f1623-61f7-4aa8-8e56-868db8d60e7a).html ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.727921.
MLA Handbook (7th Edition):
Florez Vargas, Oscar. “Development of strategies for assessing reporting in biomedical research : moving toward enhancing reproducibility.” 2016. Web. 17 Jan 2021.
Vancouver:
Florez Vargas O. Development of strategies for assessing reporting in biomedical research : moving toward enhancing reproducibility. [Internet] [Doctoral dissertation]. University of Manchester; 2016. [cited 2021 Jan 17].
Available from: https://www.research.manchester.ac.uk/portal/en/theses/development-of-strategies-for-assessing-reporting-in-biomedical-research-moving-toward-enhancing-reproducibility(f51f1623-61f7-4aa8-8e56-868db8d60e7a).html ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.727921.
Council of Science Editors:
Florez Vargas O. Development of strategies for assessing reporting in biomedical research : moving toward enhancing reproducibility. [Doctoral Dissertation]. University of Manchester; 2016. Available from: https://www.research.manchester.ac.uk/portal/en/theses/development-of-strategies-for-assessing-reporting-in-biomedical-research-moving-toward-enhancing-reproducibility(f51f1623-61f7-4aa8-8e56-868db8d60e7a).html ; https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.727921

Victoria University
26.
Kruger, Gina.
Promoting normal birthing : aspiring to develop a midwife-led scope of practice.
Degree: phd, College of Health and Biomedicine, 2014, Victoria University
URL: http://vuir.vu.edu.au/24842/
► The purpose of this study was to develop a substantive theory of the processes used by midwives in exercising their scope of practice when caring…
(more)
▼ The purpose of this study was to develop a substantive theory of the processes used by midwives in exercising their scope of practice when caring for women and babies during normal birthing. The grounded theory approach of Strauss and Corbin (Corbin & Strauss, 2008; Strauss & Corbin, 1998, 1990) was employed to inform data collection and analysis, including the use of participant observation and in-depth interviews with seventeen midwives practising in a hospital maternity unit. From this approach, the core category of Promoting normal birthing: Aspiring to develop a midwife-led scope of practice emerged, illustrating the processes utilised by midwives in practice to support normal birth.
Subjects/Keywords: 1110 Nursing; College of Health and Biomedicine
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Kruger, G. (2014). Promoting normal birthing : aspiring to develop a midwife-led scope of practice. (Doctoral Dissertation). Victoria University. Retrieved from http://vuir.vu.edu.au/24842/
Chicago Manual of Style (16th Edition):
Kruger, Gina. “Promoting normal birthing : aspiring to develop a midwife-led scope of practice.” 2014. Doctoral Dissertation, Victoria University. Accessed January 17, 2021.
http://vuir.vu.edu.au/24842/.
MLA Handbook (7th Edition):
Kruger, Gina. “Promoting normal birthing : aspiring to develop a midwife-led scope of practice.” 2014. Web. 17 Jan 2021.
Vancouver:
Kruger G. Promoting normal birthing : aspiring to develop a midwife-led scope of practice. [Internet] [Doctoral dissertation]. Victoria University; 2014. [cited 2021 Jan 17].
Available from: http://vuir.vu.edu.au/24842/.
Council of Science Editors:
Kruger G. Promoting normal birthing : aspiring to develop a midwife-led scope of practice. [Doctoral Dissertation]. Victoria University; 2014. Available from: http://vuir.vu.edu.au/24842/

Victoria University
27.
Liu, Sarah.
The impact of borderline personality traits on commitment in romantic relationships: An application of the investment model.
Degree: other, College of Health and Biomedicine, 2017, Victoria University
URL: http://vuir.vu.edu.au/34438/
► Borderline personality disorder is characterised by marked impairment in affective, cognitive, behavioural and interpersonal functioning. Recognising the growing need to understand personality pathology on a…
(more)
▼ Borderline personality disorder is characterised by marked impairment in affective, cognitive, behavioural and interpersonal functioning. Recognising the growing need to understand personality pathology on a continuum, the present dissertation sought to examine the impact of borderline personality traits on romantic relationship commitment in a general population, with consideration of attachment styles. In particular, the study utilised the well-established investment model framework to achieve this aim.
Subjects/Keywords: 1701 Psychology; College of Health and Biomedicine
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Liu, S. (2017). The impact of borderline personality traits on commitment in romantic relationships: An application of the investment model. (Thesis). Victoria University. Retrieved from http://vuir.vu.edu.au/34438/
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Liu, Sarah. “The impact of borderline personality traits on commitment in romantic relationships: An application of the investment model.” 2017. Thesis, Victoria University. Accessed January 17, 2021.
http://vuir.vu.edu.au/34438/.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Liu, Sarah. “The impact of borderline personality traits on commitment in romantic relationships: An application of the investment model.” 2017. Web. 17 Jan 2021.
Vancouver:
Liu S. The impact of borderline personality traits on commitment in romantic relationships: An application of the investment model. [Internet] [Thesis]. Victoria University; 2017. [cited 2021 Jan 17].
Available from: http://vuir.vu.edu.au/34438/.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Liu S. The impact of borderline personality traits on commitment in romantic relationships: An application of the investment model. [Thesis]. Victoria University; 2017. Available from: http://vuir.vu.edu.au/34438/
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Melbourne
28.
Björnmalm, Axel Mattias Håkansson.
Particles under flow: engineering and evaluating nanostructured particles in fluidic devices.
Degree: 2016, University of Melbourne
URL: http://hdl.handle.net/11343/114596
► Nanoengineered particles can be used to improve human health, in areas ranging from diagnostics and imaging to therapeutics and regenerative medicine, but only a few…
(more)
▼ Nanoengineered particles can be used to improve human health, in areas ranging from diagnostics and imaging to therapeutics and regenerative medicine, but only a few examples have made it from the lab to the clinic. The aim of this thesis is to show how flow-based devices can be used to help address some of the key challenges in the field—both in making particles and in understanding how they work—to help accelerate the development of nanostructured polymer particles.
Subjects/Keywords: materials science; microfluidics; nanomaterials; engineering; biomedicine
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Björnmalm, A. M. H. (2016). Particles under flow: engineering and evaluating nanostructured particles in fluidic devices. (Doctoral Dissertation). University of Melbourne. Retrieved from http://hdl.handle.net/11343/114596
Chicago Manual of Style (16th Edition):
Björnmalm, Axel Mattias Håkansson. “Particles under flow: engineering and evaluating nanostructured particles in fluidic devices.” 2016. Doctoral Dissertation, University of Melbourne. Accessed January 17, 2021.
http://hdl.handle.net/11343/114596.
MLA Handbook (7th Edition):
Björnmalm, Axel Mattias Håkansson. “Particles under flow: engineering and evaluating nanostructured particles in fluidic devices.” 2016. Web. 17 Jan 2021.
Vancouver:
Björnmalm AMH. Particles under flow: engineering and evaluating nanostructured particles in fluidic devices. [Internet] [Doctoral dissertation]. University of Melbourne; 2016. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/11343/114596.
Council of Science Editors:
Björnmalm AMH. Particles under flow: engineering and evaluating nanostructured particles in fluidic devices. [Doctoral Dissertation]. University of Melbourne; 2016. Available from: http://hdl.handle.net/11343/114596

Texas Tech University
29.
Burnett, Lyndsey.
Cultural differences in medical practices, American and Chinese style: An exploratory study.
Degree: 2011, Texas Tech University
URL: http://hdl.handle.net/2346/ETD-TTU-2011-08-1728
► Every person experiences sickness differently. Culture influences how we see the world and particularly sickness and medicine. Medicinal knowledge differs from culture to culture because…
(more)
▼ Every person experiences sickness differently. Culture influences how we see the world and particularly sickness and medicine. Medicinal knowledge differs from culture to culture because of the varying concepts and ideologies set forth by each particular society. The purpose of this thesis is to compare and contrast the Western and Chinese viewpoints of
biomedicine and traditional medicine and how their respective cultural philosophies influence medicine and the treatment of patients. This will be accomplished by examining how each culture influences views of medicine, sickness, and the body as a whole. This topic is significant because both forms of medicine are diffusing to other areas of the world. Medicinal practices are a reflection of culture and as different countries accumulate varying forms of medicine, they bring with it aspects of their cultures of origin.
Advisors/Committee Members: Koch, Jerome R. (Committee Chair), Tsai, Yung-Mei (committee member).
Subjects/Keywords: Chinese medicine; Western medicine; Biomedicine; Culture
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APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Burnett, L. (2011). Cultural differences in medical practices, American and Chinese style: An exploratory study. (Thesis). Texas Tech University. Retrieved from http://hdl.handle.net/2346/ETD-TTU-2011-08-1728
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Burnett, Lyndsey. “Cultural differences in medical practices, American and Chinese style: An exploratory study.” 2011. Thesis, Texas Tech University. Accessed January 17, 2021.
http://hdl.handle.net/2346/ETD-TTU-2011-08-1728.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Burnett, Lyndsey. “Cultural differences in medical practices, American and Chinese style: An exploratory study.” 2011. Web. 17 Jan 2021.
Vancouver:
Burnett L. Cultural differences in medical practices, American and Chinese style: An exploratory study. [Internet] [Thesis]. Texas Tech University; 2011. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/2346/ETD-TTU-2011-08-1728.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Burnett L. Cultural differences in medical practices, American and Chinese style: An exploratory study. [Thesis]. Texas Tech University; 2011. Available from: http://hdl.handle.net/2346/ETD-TTU-2011-08-1728
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Hawaii – Manoa
30.
Vaughan, Ashley Marie.
The gift and the road : exploring the meanings of health and illness in Tautu, Vanuatu.
Degree: 2016, University of Hawaii – Manoa
URL: http://hdl.handle.net/10125/100762
► Ph.D. University of Hawaii at Manoa 2013.
Based on 13 months of ethnographic research, this dissertation documents how the people of Tautu, Vanuatu incorporate the…
(more)
▼ Ph.D. University of Hawaii at Manoa 2013.
Based on 13 months of ethnographic research, this dissertation documents how the people of Tautu, Vanuatu incorporate the global flows of biomedicine and Christianity into their local knowledge structures and social practices and the resulting integration of biomedical, Christian, and traditional medical ideologies and practices. This integration is articulated in Tautuans' theories of illness causation and categories of care; knowledge practice; diagnosis and treatment processes; definitions of health and illness; and healing narratives. At the center of this creative, integrative process are traditional social relations based on kinship and exchange and the related principles of pragmatism, "dividuality," and reciprocity. However, Christianity – specifically "gift" narratives in which Tautuans explain that their healing knowledge and powers come from God – is the main discursive frame through which Tautuans create a middle ground between "traditional" and "modern/Western." These gift narratives serve multiple purposes. First, they allow patients and practitioners to organize their past experiences and to make sense of suffering. Second, in these "gift" narratives Tautuans authorize certain aspects of traditional medicine by reconstructing them as Christian knowledge. Third, through these narratives Tautuans are carving out a space where biomedical, traditional, Christian forms of healing are complimentary practices, as the idea that all types of medicine are "gifts from God" causes the categories of biomedical, traditional, and Christian to fall away and to be subsumed by the larger heading of "spiritual healing." Fourth, these gift narratives are also religious narratives about salvation intended to convert people not only to kastom medicine but also to the Christian faith. Finally, these narratives are an attempt to appropriate and indigenize biomedical ideologies and forms of knowledge production and to gain international recognition of the efficacy of traditional medicinal plants; these narratives, then, illustrate Tautuans' desires to globalize their local practices and to engage with the modern world on their own terms.
Subjects/Keywords: ethnographic research; Tautu; Vanuatu; biomedicine; Christianity
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❌
APA ·
Chicago ·
MLA ·
Vancouver ·
CSE |
Export
to Zotero / EndNote / Reference
Manager
APA (6th Edition):
Vaughan, A. M. (2016). The gift and the road : exploring the meanings of health and illness in Tautu, Vanuatu. (Thesis). University of Hawaii – Manoa. Retrieved from http://hdl.handle.net/10125/100762
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Chicago Manual of Style (16th Edition):
Vaughan, Ashley Marie. “The gift and the road : exploring the meanings of health and illness in Tautu, Vanuatu.” 2016. Thesis, University of Hawaii – Manoa. Accessed January 17, 2021.
http://hdl.handle.net/10125/100762.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
MLA Handbook (7th Edition):
Vaughan, Ashley Marie. “The gift and the road : exploring the meanings of health and illness in Tautu, Vanuatu.” 2016. Web. 17 Jan 2021.
Vancouver:
Vaughan AM. The gift and the road : exploring the meanings of health and illness in Tautu, Vanuatu. [Internet] [Thesis]. University of Hawaii – Manoa; 2016. [cited 2021 Jan 17].
Available from: http://hdl.handle.net/10125/100762.
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
Council of Science Editors:
Vaughan AM. The gift and the road : exploring the meanings of health and illness in Tautu, Vanuatu. [Thesis]. University of Hawaii – Manoa; 2016. Available from: http://hdl.handle.net/10125/100762
Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation
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