subject:(Amino acid sequence)

University of Hong Kong

1. {273a67}亚{275c28}; An, Yatong. Protein function prediction based on pocket-specific noncontiguous amino acid subsequences.

Degree: M. Phil., 2015, University of Hong Kong

URL: An, Y. [{273a67}亚{275c28}]. (2015). Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5576786 ; http://hdl.handle.net/10722/221082

►

Building a protein functional repertoire is important for many life sciences. Unfortunately, less than 1% of protein sequences have been annotated with reliable evidence. The… (more)

Subjects/Keywords: Proteomics - Data processing; Amino acid sequence

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APA (6^th Edition):

{273a67}亚{275c28}; An, Y. (2015). Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. (Masters Thesis). University of Hong Kong. Retrieved from An, Y. [{273a67}亚{275c28}]. (2015). Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5576786 ; http://hdl.handle.net/10722/221082

Chicago Manual of Style (16^th Edition):

{273a67}亚{275c28}; An, Yatong. “Protein function prediction based on pocket-specific noncontiguous amino acid subsequences.” 2015. Masters Thesis, University of Hong Kong. Accessed December 08, 2019. An, Y. [{273a67}亚{275c28}]. (2015). Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5576786 ; http://hdl.handle.net/10722/221082.

MLA Handbook (7^th Edition):

{273a67}亚{275c28}; An, Yatong. “Protein function prediction based on pocket-specific noncontiguous amino acid subsequences.” 2015. Web. 08 Dec 2019.

Vancouver:

{273a67}亚{275c28}; An Y. Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. [Internet] [Masters thesis]. University of Hong Kong; 2015. [cited 2019 Dec 08]. Available from: An, Y. [{273a67}亚{275c28}]. (2015). Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5576786 ; http://hdl.handle.net/10722/221082.

Council of Science Editors:

{273a67}亚{275c28}; An Y. Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. [Masters Thesis]. University of Hong Kong; 2015. Available from: An, Y. [{273a67}亚{275c28}]. (2015). Protein function prediction based on pocket-specific noncontiguous amino acid subsequences. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b5576786 ; http://hdl.handle.net/10722/221082

Columbia University

2. Fleisher, Rachel Chaya. Examining the Effects of D-Amino Acids on Translation.

Degree: 2016, Columbia University

URL: https://doi.org/10.7916/D8X92BH4

► The ribosome is responsible for mRNA-templated protein translation in all living cells. The translational machinery (TM) has evolved to use 20 amino acids each esterified… (more)

▼ The ribosome is responsible for mRNA-templated protein translation in all living cells. The translational machinery (TM) has evolved to use 20 amino acids each esterified onto one of several tRNA bodies. While the active site of the ribosome, known as the peptidyl transferase center (PTC), is able to handle a remarkable amount of substrate diversity, many classes of unnatural amino acids are not compatible with the TM. For example, in the field of unnatural amino acid mutagenesis, the site-specific incorporation of biologically useful amino acids into proteins, such as fluorophores, has often proven to be unfeasible. This runs counter to the accepted notion that the ribosome is blind to the structure of the amino acid and is capable of accepting any amino acid as long as the mRNA codon: tRNA anticodon pairing is correct. Two studies by our group set out to test the hypothesis that the ribosome can indeed discriminate the structure of the amino acid. Using a fully purified E. coli translation system, the first study showed that natural amino acids misacylated onto fully modified but non-native tRNAs show small but reproducible effects on the steps of aminoacyl-tRNA (aa-tRNA) selection. The second study, in which I participated, utilized D-aa-tRNAs in the same E. coli translation system to study how amino acids of the inverted stereochemistry to those found in ribosomally-synthesized proteins affect translation elongation. We showed that these unnatural substrates serve as peptidyl acceptors but once translocated into the P-site of the ribosome, fail as peptidyl donors and stall translation elongation by inactivating the PTC. The motivation of my work has been to further characterize the effects of D-aa-tRNAs on translation elongation. To this end, I examined how the PTC is affected structurally and functionally by the presence of ribosomal substrates containing D-amino acids. Chapter one contains an introduction to this work. Chapter two describes chemical probing experiments that demonstrate that the presence of peptidyl-D-aminoacyl-tRNAs in the P-site of the ribosome allosterically modulates the secondary structure of ribosomal exit tunnel nucleotides A2058 and A2059. Chapter three describes how the reactivity of peptidyl-D-aminoacyl-tRNAs to form tripeptides is highly dependent on the identity of the amino acid it is reacting with; protein yields can be close to what is obtained with natural amino acids or almost completely abolished. Chapter four contains the methods used to do this research. From the observations presented here as well as from the work of other laboratories, a picture of the PTC emerges in which the pairing of the A- and P- site substrates is integral in either promoting or suppressing catalysis by the PTC. This work has implications for the field of unnatural amino acid mutagenesis, particularly for strategies to improve the incorporation of interesting unnatural amino acid by the ribosome. In addition, this work adds an important aspect to the growing body of knowledge of ribosome…

Subjects/Keywords: Messenger RNA; Amino acids; Amino acid sequence; Ribosomes; Biochemistry; Chemistry

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APA (6^th Edition):

Fleisher, R. C. (2016). Examining the Effects of D-Amino Acids on Translation. (Doctoral Dissertation). Columbia University. Retrieved from https://doi.org/10.7916/D8X92BH4

Chicago Manual of Style (16^th Edition):

Fleisher, Rachel Chaya. “Examining the Effects of D-Amino Acids on Translation.” 2016. Doctoral Dissertation, Columbia University. Accessed December 08, 2019. https://doi.org/10.7916/D8X92BH4.

MLA Handbook (7^th Edition):

Fleisher, Rachel Chaya. “Examining the Effects of D-Amino Acids on Translation.” 2016. Web. 08 Dec 2019.

Vancouver:

Fleisher RC. Examining the Effects of D-Amino Acids on Translation. [Internet] [Doctoral dissertation]. Columbia University; 2016. [cited 2019 Dec 08]. Available from: https://doi.org/10.7916/D8X92BH4.

Council of Science Editors:

Fleisher RC. Examining the Effects of D-Amino Acids on Translation. [Doctoral Dissertation]. Columbia University; 2016. Available from: https://doi.org/10.7916/D8X92BH4

University of KwaZulu-Natal

3. [No author]. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies.

Degree: 2014, University of KwaZulu-Natal

URL: http://dx.doi.org/10.1038/nature13036

► Antibodies capable of neutralizing HIV-1 often target variable regions 1 and 2 (V1V2) of the HIV-1 envelope, but the mechanism of their elicitation has been… (more)

Subjects/Keywords: AIDS Vaccines/chemistry.; AIDS Vaccines/immunology.; Amino Acid Sequence.

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APA (6^th Edition):

author], [. (2014). Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. (Thesis). University of KwaZulu-Natal. Retrieved from http://dx.doi.org/10.1038/nature13036

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

author], [No. “Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. ” 2014. Thesis, University of KwaZulu-Natal. Accessed December 08, 2019. http://dx.doi.org/10.1038/nature13036.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

author], [No. “Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. ” 2014. Web. 08 Dec 2019.

Vancouver:

author] [. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. [Internet] [Thesis]. University of KwaZulu-Natal; 2014. [cited 2019 Dec 08]. Available from: http://dx.doi.org/10.1038/nature13036.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

author] [. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. [Thesis]. University of KwaZulu-Natal; 2014. Available from: http://dx.doi.org/10.1038/nature13036

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Indian Institute of Science

4. Rakshit, Sourav. A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints.

Degree: 2011, Indian Institute of Science

URL: http://hdl.handle.net/2005/1979

► We have developed a novel computational approach to functional de novo protein design using gradient based continuous optimization techniques. Motivated by many engineering applications in… (more)

Subjects/Keywords: Protein Design; Molecular Structure; Amino Acid Sequence; Proteins; Biochemistry

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6^th Edition):

Rakshit, S. (2011). A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints. (Thesis). Indian Institute of Science. Retrieved from http://hdl.handle.net/2005/1979

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Rakshit, Sourav. “A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints.” 2011. Thesis, Indian Institute of Science. Accessed December 08, 2019. http://hdl.handle.net/2005/1979.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Rakshit, Sourav. “A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints.” 2011. Web. 08 Dec 2019.

Vancouver:

Rakshit S. A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints. [Internet] [Thesis]. Indian Institute of Science; 2011. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/2005/1979.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Rakshit S. A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints. [Thesis]. Indian Institute of Science; 2011. Available from: http://hdl.handle.net/2005/1979

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Rhodes University

5. Murray, Lindsay. Localisation of Theiler's Murine Encephalomyelitis virus non-structural proteins 2B, 2C, 2BC and 3A in BHK-21 cells, and the effect of amino acid substitutions in 2C on localisation and virus replication.

Degree: MS, Faculty of Science, Biochemistry, Microbiology and Biotechnology, 2007, Rhodes University

URL: http://hdl.handle.net/10962/d1007722

► The picornavirus family includes significant human and animal viruses such as poliovirus (PV), human rhinovirus (HRV) and foot-and-mouth-disease virus (FMDV). Current disease treatment and control… (more)

▼ The picornavirus family includes significant human and animal viruses such as poliovirus (PV), human rhinovirus (HRV) and foot-and-mouth-disease virus (FMDV). Current disease treatment and control strategies are limited by an incomplete understanding of the interactions between the non-structural, replicative picornavirus proteins and host cell components. To investigate these interactions, Theiler's murine encephalomyelitis virus (TMEV) 2B, 2C, 2BC and 3A proteins were transiently expressed in BHK-21 cells and detected by indirect immunostaining and laser-scanning or epifluorescence microscopy. The signal of the 2B protein overlapped with that of the ER marker protein, ERp60, as well as that of the peripheral Golgi marker protein, β-COP. The 2C protein overlapped with ERp60 in a faint reticular stain, and localised to large punctate structures that partially overlapped with β-COP at higher levels of expression. The 2BC protein located to large perinuclear structures that overlapped exclusively with β-COP. The TMEV 3A protein signal overlapped with both ERp60 and β-COP stains, in addition in cells expressing the 3A protein the ER appeared swollen and bulbous while the Golgi was dispersed in some cells. 2C and 2BC proteins with C-terminal deletions localised in the same manner as the wild type proteins indicating that the localisation signals that determine subcellular localisation of the proteins are within the N-terminal 60 amino acids of the 2C protein. The significance of the high degree of conservation of the N-terminal domain of the 2C protein throughout the Picornaviridae was investigated through the introduction of amino acid substitution mutations at highly conserved residues in the N-terminal domain of 2C into the viral cDNA. Upon transfection of the viral RNA into BHK-21 cells, it was observed that substitution of amino acid residues 8, 18 and 29 abolished the ability of TMEV to induce cytopathic effect (CPE), while substitution of residues 4, 14 and 23 only attenuated the ability of TMEV to induce CPE. To determine whether amino acid substitution mutations would affect the localisation of the 2C protein, 2C proteins with substitution mutations at amino acids 4, 8, 14, 18, 23 and 29 were transiently expressed in BHK-21 cells and detected by indirect imrnunostaining and examination by laser-scanning confocal and epifluorescence microscopy. The 2C mutant 4, 8 and 29 proteins showed slightly altered localisation patterns compared to the wild type protein with a significant portion of the proteins localising in a perinuclear stain suggesting possible localisation to the nuclear envelop. The 2C mutant 14 and 18 proteins localised to a diffuse pattern in BHK-21 cells while the 2C mutant 23 protein located to small punctate structures that partially overlapped with the ERp60 stain but were completely separate from the β-COP stain. Finally, a hydrophilic, antigenic region of the 2C protein was expressed in frame with an N-terminal GST tag and was successfully purified on a pilot-scale and detected by Western… Advisors/Committee Members: Knox, Caroline.

Subjects/Keywords: Encephalomyelitis – Genetic aspects; Amino acid sequence; Picornaviruses; Viruses – Reproduction

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APA (6^th Edition):

Murray, L. (2007). Localisation of Theiler's Murine Encephalomyelitis virus non-structural proteins 2B, 2C, 2BC and 3A in BHK-21 cells, and the effect of amino acid substitutions in 2C on localisation and virus replication. (Masters Thesis). Rhodes University. Retrieved from http://hdl.handle.net/10962/d1007722

Chicago Manual of Style (16^th Edition):

Murray, Lindsay. “Localisation of Theiler's Murine Encephalomyelitis virus non-structural proteins 2B, 2C, 2BC and 3A in BHK-21 cells, and the effect of amino acid substitutions in 2C on localisation and virus replication.” 2007. Masters Thesis, Rhodes University. Accessed December 08, 2019. http://hdl.handle.net/10962/d1007722.

MLA Handbook (7^th Edition):

Murray, Lindsay. “Localisation of Theiler's Murine Encephalomyelitis virus non-structural proteins 2B, 2C, 2BC and 3A in BHK-21 cells, and the effect of amino acid substitutions in 2C on localisation and virus replication.” 2007. Web. 08 Dec 2019.

Vancouver:

Murray L. Localisation of Theiler's Murine Encephalomyelitis virus non-structural proteins 2B, 2C, 2BC and 3A in BHK-21 cells, and the effect of amino acid substitutions in 2C on localisation and virus replication. [Internet] [Masters thesis]. Rhodes University; 2007. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10962/d1007722.

Council of Science Editors:

Murray L. Localisation of Theiler's Murine Encephalomyelitis virus non-structural proteins 2B, 2C, 2BC and 3A in BHK-21 cells, and the effect of amino acid substitutions in 2C on localisation and virus replication. [Masters Thesis]. Rhodes University; 2007. Available from: http://hdl.handle.net/10962/d1007722

Indian Institute of Science

6. Rakshit, Sourav. A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints.

Degree: 2011, Indian Institute of Science

URL: http://etd.iisc.ernet.in/handle/2005/1979 ; http://etd.ncsi.iisc.ernet.in/abstracts/2564/G24980-Abs.pdf

► We have developed a novel computational approach to functional de novo protein design using gradient based continuous optimization techniques. Motivated by many engineering applications in… (more)

Subjects/Keywords: Protein Design; Molecular Structure; Amino Acid Sequence; Proteins; Biochemistry

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6^th Edition):

Rakshit, S. (2011). A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints. (Thesis). Indian Institute of Science. Retrieved from http://etd.iisc.ernet.in/handle/2005/1979 ; http://etd.ncsi.iisc.ernet.in/abstracts/2564/G24980-Abs.pdf

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Rakshit, Sourav. “A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints.” 2011. Thesis, Indian Institute of Science. Accessed December 08, 2019. http://etd.iisc.ernet.in/handle/2005/1979 ; http://etd.ncsi.iisc.ernet.in/abstracts/2564/G24980-Abs.pdf.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Rakshit, Sourav. “A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints.” 2011. Web. 08 Dec 2019.

Vancouver:

Rakshit S. A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints. [Internet] [Thesis]. Indian Institute of Science; 2011. [cited 2019 Dec 08]. Available from: http://etd.iisc.ernet.in/handle/2005/1979 ; http://etd.ncsi.iisc.ernet.in/abstracts/2564/G24980-Abs.pdf.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Rakshit S. A Continuous Optimization Approach To Protein Design With Structural And Functional Constraints. [Thesis]. Indian Institute of Science; 2011. Available from: http://etd.iisc.ernet.in/handle/2005/1979 ; http://etd.ncsi.iisc.ernet.in/abstracts/2564/G24980-Abs.pdf

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Hong Kong University of Science and Technology

7. Kong, Lingming. Designing peptide inhibitors for the guanylate kinase domain of the MAGUK family scaffold proteins using computational approaches.

Degree: 2016, Hong Kong University of Science and Technology

URL: https://doi.org/10.14711/thesis-b1626019 ; http://repository.ust.hk/ir/bitstream/1783.1-87140/1/th_redirect.html

► MAGUKs (membrane-associated guanylate kinases) are a family of scaffold proteins. They are distributed in both pre- and post-synaptic sides of excitatory synapses and function in… (more)

Subjects/Keywords: Scaffold proteins; Amino acid sequence; Molecular dynamics; Guanylate cyclase

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6^th Edition):

Kong, L. (2016). Designing peptide inhibitors for the guanylate kinase domain of the MAGUK family scaffold proteins using computational approaches. (Thesis). Hong Kong University of Science and Technology. Retrieved from https://doi.org/10.14711/thesis-b1626019 ; http://repository.ust.hk/ir/bitstream/1783.1-87140/1/th_redirect.html

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Kong, Lingming. “Designing peptide inhibitors for the guanylate kinase domain of the MAGUK family scaffold proteins using computational approaches.” 2016. Thesis, Hong Kong University of Science and Technology. Accessed December 08, 2019. https://doi.org/10.14711/thesis-b1626019 ; http://repository.ust.hk/ir/bitstream/1783.1-87140/1/th_redirect.html.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Kong, Lingming. “Designing peptide inhibitors for the guanylate kinase domain of the MAGUK family scaffold proteins using computational approaches.” 2016. Web. 08 Dec 2019.

Vancouver:

Kong L. Designing peptide inhibitors for the guanylate kinase domain of the MAGUK family scaffold proteins using computational approaches. [Internet] [Thesis]. Hong Kong University of Science and Technology; 2016. [cited 2019 Dec 08]. Available from: https://doi.org/10.14711/thesis-b1626019 ; http://repository.ust.hk/ir/bitstream/1783.1-87140/1/th_redirect.html.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Kong L. Designing peptide inhibitors for the guanylate kinase domain of the MAGUK family scaffold proteins using computational approaches. [Thesis]. Hong Kong University of Science and Technology; 2016. Available from: https://doi.org/10.14711/thesis-b1626019 ; http://repository.ust.hk/ir/bitstream/1783.1-87140/1/th_redirect.html

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Montana State University

8. Qingge, Letu. Computational investigation on protein sequencing and genome rearrangement problems.

Degree: College of Engineering, 2018, Montana State University

URL: https://scholarworks.montana.edu/xmlui/handle/1/14693

► De novo protein sequencing and genome rearrangement problems are the classical problems in bioinformatics. De novo protein sequencing problem try to determine the whole sequence… (more)

▼ De novo protein sequencing and genome rearrangement problems are the classical problems in bioinformatics. De novo protein sequencing problem try to determine the whole sequence of amino acids based on the mass spectrometry data without using the database search. Genome rearrangement problems try to recognize the evolutionary process between two species. In this dissertation, first, we describe the process of constructing target protein sequences by utilizing mass spectrometry based data from both top-down and bottom-up tandem mass spectra. In addition to using data from mass spectrometry analysis, we also utilize techniques for de novo protein sequencing using a homologous protein sequence as a reference to attempt to fill in any remaining gaps in the constructed protein scaffold. Initial results for analysis on real datasets yield over 96-100% coverage and 73-91% accuracy with the target protein sequence. Second, we use different genome rearrangement operations to transform one genome to another such that the similarity between two genomes is maximized. We explore these problems in terms of theoretical and experimental analysis. For sorting unsigned genome problem by double cut and join (DCJ) operation, we design a randomized fixed parameter tractable (FPT) approximation algorithm for computing the DCJ distance with an approximation factor 4/3 + Epsilon, and the running time O*(2 d*), where d* represents the optimal DCJ distance. For one-sided exemplar adjacency number problem, we reformulate the problem as maximum independent set in a colored interval graph and hence reduce the appearance of each gene at most twice. Moreover, we design a factor-2 approximation and also show that the approximation factor can not be improved less than 2 by some local search technique. At last, we apply integer linear programming to solve the reduced instance exactly. For the minimum copy number generation problem, we analyze the complexity of different variations of this problem and show a practical algorithm for the general case based on greedy method. Advisors/Committee Members: Chairperson, Graduate Committee: Binhai Zhu (advisor).

Subjects/Keywords: Amino acid sequence.; Genomics.; Bioinformatics.; Mass spectrometry.; Algorithms.; Linear programming.

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APA (6^th Edition):

Qingge, L. (2018). Computational investigation on protein sequencing and genome rearrangement problems. (Thesis). Montana State University. Retrieved from https://scholarworks.montana.edu/xmlui/handle/1/14693

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Qingge, Letu. “Computational investigation on protein sequencing and genome rearrangement problems.” 2018. Thesis, Montana State University. Accessed December 08, 2019. https://scholarworks.montana.edu/xmlui/handle/1/14693.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Qingge, Letu. “Computational investigation on protein sequencing and genome rearrangement problems.” 2018. Web. 08 Dec 2019.

Vancouver:

Qingge L. Computational investigation on protein sequencing and genome rearrangement problems. [Internet] [Thesis]. Montana State University; 2018. [cited 2019 Dec 08]. Available from: https://scholarworks.montana.edu/xmlui/handle/1/14693.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Qingge L. Computational investigation on protein sequencing and genome rearrangement problems. [Thesis]. Montana State University; 2018. Available from: https://scholarworks.montana.edu/xmlui/handle/1/14693

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

East Carolina University

9. Garapati, Sri Ramya. Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity.

Degree: 2010, East Carolina University

URL: http://libres.uncg.edu/ir/listing.aspx?styp=ti&id=14467

► Prothymosin-alpha (ProT[alpha]) is a protein mainly located in the nucleus of the cells. Though its exact function is not known it is believed to be… (more)

▼ Prothymosin-alpha (ProT[alpha]) is a protein mainly located in the nucleus of the cells. Though its exact function is not known it is believed to be involved in cell proliferation. The ability of this protein to inhibit HIV replication in macrophages cells was discovered recently. Apart from the full length protein a peptide derived from central region of it (from residues 50-89) is shown to inhibit HIV in a dose dependent manner. The central region of the protein (residues 50-89) has a combined total of 26 glutamic acid (Glu) and aspartic acid (Asp) residues which imparts high negative charge and acidity to the peptide. ProT[alpha] 50-89 peptide was synthesized to reconfirm its anti-HIV activity. Along with it three other peptide sequences (Polyglutamic acid ProT[alpha](50-105) and AlexFluor488-ProT[alpha](51-89)) were synthesized in order to understand the features that give the protein its anti-HIV activity. They were synthesized to understand if high negative charge and entry of the peptide into the nucleus are required for protein's anti-HIV activity. All the sequences were synthesized using Solid Phase Peptide Synthesis coupled with a 9-Fluorenylmethoxycarbonyl (Fmoc) protecting strategy. Synthesis of ProT[alpha](50-89) was carried out on Microwave synthesizer whereas ProT[alpha](50-105) and the Polyglutamic acid sequence were synthesized using an automated synthesizer. During the synthesis of ProT[alpha](50-105) with a new protecting group strategy we encountered unexpected formation of a glutarimide between residues 68 and 69 which was further resolved. Purification of these sequences was performed using Reverse-Phase High Performance Liquid Chromatography (RP-HPLC) or Strong Anion Exchange Chromatography (SAX) and characterized with Electrospray Ionization-Mass Spectrometry (ESI-MS). Samples obtained from SAX contained salt and were desalted by dialysis for 6 hours. Activity testing was done on two of the sequences. Results from these experiments reconfirmed the anti-HIV activity of ProT[alpha](50-89)N50W and also suggest that there is some sequence specificity to the peptide's ability to inhibit HIV replication in the post-integration step. Results demonstrating the importance of the NLS will also be discussed.; Chemistry, Biochemistry Advisors/Committee Members: Colin S. Burns (advisor).

Subjects/Keywords: Growth factors; Peptides; Amino acid sequence; Proteins; HIV (Viruses)

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APA (6^th Edition):

Garapati, S. R. (2010). Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity. (Masters Thesis). East Carolina University. Retrieved from http://libres.uncg.edu/ir/listing.aspx?styp=ti&id=14467

Chicago Manual of Style (16^th Edition):

Garapati, Sri Ramya. “Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity.” 2010. Masters Thesis, East Carolina University. Accessed December 08, 2019. http://libres.uncg.edu/ir/listing.aspx?styp=ti&id=14467.

MLA Handbook (7^th Edition):

Garapati, Sri Ramya. “Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity.” 2010. Web. 08 Dec 2019.

Vancouver:

Garapati SR. Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity. [Internet] [Masters thesis]. East Carolina University; 2010. [cited 2019 Dec 08]. Available from: http://libres.uncg.edu/ir/listing.aspx?styp=ti&id=14467.

Council of Science Editors:

Garapati SR. Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity. [Masters Thesis]. East Carolina University; 2010. Available from: http://libres.uncg.edu/ir/listing.aspx?styp=ti&id=14467

Rutgers University

10. Fadel, Addi R., 1965-. Protein matching using secondary structure similarities.

Degree: Biochemistry, 2013, Rutgers University

URL: https://rucore.libraries.rutgers.edu/rutgers-lib/41766/

Subjects/Keywords: Amino acid sequence; Proteins – Analysis

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APA (6^th Edition):

Fadel, Addi R., 1. (2013). Protein matching using secondary structure similarities. (Thesis). Rutgers University. Retrieved from https://rucore.libraries.rutgers.edu/rutgers-lib/41766/

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Fadel, Addi R., 1965-. “Protein matching using secondary structure similarities.” 2013. Thesis, Rutgers University. Accessed December 08, 2019. https://rucore.libraries.rutgers.edu/rutgers-lib/41766/.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Fadel, Addi R., 1965-. “Protein matching using secondary structure similarities.” 2013. Web. 08 Dec 2019.

Vancouver:

Fadel, Addi R. 1. Protein matching using secondary structure similarities. [Internet] [Thesis]. Rutgers University; 2013. [cited 2019 Dec 08]. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/41766/.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Fadel, Addi R. 1. Protein matching using secondary structure similarities. [Thesis]. Rutgers University; 2013. Available from: https://rucore.libraries.rutgers.edu/rutgers-lib/41766/

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Arizona

11. Chu, Yi-wen, 1962-. Amino acid sequence requirements for ornithine decarboxylase activity .

Degree: 1988, University of Arizona

URL: http://hdl.handle.net/10150/276838

► ODC activity of the altered proteins was measured and compared to that of the full length 461 amino acid containing ODC. Mouse ODC cDNA sequences… (more)

Subjects/Keywords: Ornithine decarboxylase.; Amino acid sequence.

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APA (6^th Edition):

Chu, Yi-wen, 1. (1988). Amino acid sequence requirements for ornithine decarboxylase activity . (Masters Thesis). University of Arizona. Retrieved from http://hdl.handle.net/10150/276838

Chicago Manual of Style (16^th Edition):

Chu, Yi-wen, 1962-. “Amino acid sequence requirements for ornithine decarboxylase activity .” 1988. Masters Thesis, University of Arizona. Accessed December 08, 2019. http://hdl.handle.net/10150/276838.

MLA Handbook (7^th Edition):

Chu, Yi-wen, 1962-. “Amino acid sequence requirements for ornithine decarboxylase activity .” 1988. Web. 08 Dec 2019.

Vancouver:

Chu, Yi-wen 1. Amino acid sequence requirements for ornithine decarboxylase activity . [Internet] [Masters thesis]. University of Arizona; 1988. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10150/276838.

Council of Science Editors:

Chu, Yi-wen 1. Amino acid sequence requirements for ornithine decarboxylase activity . [Masters Thesis]. University of Arizona; 1988. Available from: http://hdl.handle.net/10150/276838

University of Missouri – Columbia

12. Deng, Xin. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.

Degree: 2013, University of Missouri – Columbia

URL: http://hdl.handle.net/10355/46126

► Protein sequence and profile alignment has been used essentially in most bioinformatics tasks such as protein structure modeling, function prediction, and phylogenetic analysis. We designed… (more)

Subjects/Keywords: protein sequence alignment; solvent accessibility; protein structure prediction; protein model selection; Amino acid sequence; Solvents – Analysis; Sequence alignment (Bioinformatics)

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APA (6^th Edition):

Deng, X. (2013). Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. (Thesis). University of Missouri – Columbia. Retrieved from http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Thesis, University of Missouri – Columbia. Accessed December 08, 2019. http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Deng, Xin. “Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction.” 2013. Web. 08 Dec 2019.

Vancouver:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Internet] [Thesis]. University of Missouri – Columbia; 2013. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10355/46126.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Deng X. Improved computational methods of protein sequence alignment, model selection and tertiary structure prediction. [Thesis]. University of Missouri – Columbia; 2013. Available from: http://hdl.handle.net/10355/46126

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

De Montfort University

13. Nanuwa, Sundeep. Investigation into the role of sequence-driven-features and amino acid indices for the prediction of structural classes of proteins.

Degree: PhD, 2013, De Montfort University

URL: http://hdl.handle.net/2086/9033

► The work undertaken within this thesis is towards the development of a representative set of sequence driven features for the prediction of structural classes of… (more)

▼ The work undertaken within this thesis is towards the development of a representative set of sequence driven features for the prediction of structural classes of proteins. Proteins are biological molecules that make living things function, to determine the function of a protein the structure must be known because the structure dictates its physical capabilities. A protein is generally classified into one of the four main structural classes, namely all-α, all-β, α + β or α / β, which are based on the arrangements and gross content of the secondary structure elements. Current methods manually assign the structural classes to the protein by manual inspection, which is a slow process. In order to address the problem, this thesis is concerned with the development of automated prediction of structural classes of proteins and extraction of a small but robust set of sequence driven features by using the amino acid indices. The first main study undertook a comprehensive analysis of the largest collection of sequence driven features, which includes an existing set of 1479 descriptor values grouped by ten different feature groups. The results show that composition based feature groups are the most representative towards the four main structural classes, achieving a predictive accuracy of 63.87%. This finding led to the second main study, development of the generalised amino acid composition method (GAAC), where amino acid index values are used to weigh corresponding amino acids. GAAC method results in a higher accuracy of 68.02%. The third study was to refine the amino acid indices database, which resulted in the highest accuracy of 75.52%. The main contributions from this thesis are the development of four computationally extracted sequence driven feature-sets based on the underused amino acid indices. Two of these methods, GAAC and the hybrid method have shown improvement over the usage of traditional sequence driven features in the context of smaller and refined feature sizes and classification accuracy. The development of six non-redundant novel sets of the amino acid indices dataset, of which each are more representative than the original database. Finally, the construction of two large 25% and 40% homology datasets consisting over 5000 and 7000 protein samples, respectively. A public webserver has been developed located at http://www.generalised-protein-sequence-features.com, which allows biologists and bioinformaticians to extract GAAC sequence driven features from any inputted protein sequence.

Subjects/Keywords: 572.8; protein structural classes; sequence driven features; amino acid indices; test procedures; generalised amino acid composition

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APA (6^th Edition):

Nanuwa, S. (2013). Investigation into the role of sequence-driven-features and amino acid indices for the prediction of structural classes of proteins. (Doctoral Dissertation). De Montfort University. Retrieved from http://hdl.handle.net/2086/9033

Chicago Manual of Style (16^th Edition):

Nanuwa, Sundeep. “Investigation into the role of sequence-driven-features and amino acid indices for the prediction of structural classes of proteins.” 2013. Doctoral Dissertation, De Montfort University. Accessed December 08, 2019. http://hdl.handle.net/2086/9033.

MLA Handbook (7^th Edition):

Nanuwa, Sundeep. “Investigation into the role of sequence-driven-features and amino acid indices for the prediction of structural classes of proteins.” 2013. Web. 08 Dec 2019.

Vancouver:

Nanuwa S. Investigation into the role of sequence-driven-features and amino acid indices for the prediction of structural classes of proteins. [Internet] [Doctoral dissertation]. De Montfort University; 2013. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/2086/9033.

Council of Science Editors:

Nanuwa S. Investigation into the role of sequence-driven-features and amino acid indices for the prediction of structural classes of proteins. [Doctoral Dissertation]. De Montfort University; 2013. Available from: http://hdl.handle.net/2086/9033

University of Alberta

14. Hawse, Alexisann. Unidirectional conversion in N̲e̲u̲r̲o̲s̲p̲o̲r̲a̲ mitochondrial DNA.

Degree: MS, Department of Genetics, 1988, University of Alberta

URL: https://era.library.ualberta.ca/files/v979v562s

Subjects/Keywords: Extrachromosomal DNA.; Amino acid sequence.; Neurospora.

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APA (6^th Edition):

Hawse, A. (1988). Unidirectional conversion in N̲e̲u̲r̲o̲s̲p̲o̲r̲a̲ mitochondrial DNA. (Masters Thesis). University of Alberta. Retrieved from https://era.library.ualberta.ca/files/v979v562s

Chicago Manual of Style (16^th Edition):

Hawse, Alexisann. “Unidirectional conversion in N̲e̲u̲r̲o̲s̲p̲o̲r̲a̲ mitochondrial DNA.” 1988. Masters Thesis, University of Alberta. Accessed December 08, 2019. https://era.library.ualberta.ca/files/v979v562s.

MLA Handbook (7^th Edition):

Hawse, Alexisann. “Unidirectional conversion in N̲e̲u̲r̲o̲s̲p̲o̲r̲a̲ mitochondrial DNA.” 1988. Web. 08 Dec 2019.

Vancouver:

Hawse A. Unidirectional conversion in N̲e̲u̲r̲o̲s̲p̲o̲r̲a̲ mitochondrial DNA. [Internet] [Masters thesis]. University of Alberta; 1988. [cited 2019 Dec 08]. Available from: https://era.library.ualberta.ca/files/v979v562s.

Council of Science Editors:

Hawse A. Unidirectional conversion in N̲e̲u̲r̲o̲s̲p̲o̲r̲a̲ mitochondrial DNA. [Masters Thesis]. University of Alberta; 1988. Available from: https://era.library.ualberta.ca/files/v979v562s

University of KwaZulu-Natal

15. [No author]. A synthetic and computational investigation of pentacycloundecane amino acid derivatives.

Degree: Chemistry, 2005, University of KwaZulu-Natal

URL: http://hdl.handle.net/10413/1682

► Computational studies have shown that cage skeletons (7) have the tendency to impose a 310-helix as well as an áL-helix on the polypepeptide chain. Residues… (more)

Subjects/Keywords: Polycyclic compounds.; Amino acid sequence.; Chemistry.

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APA (6^th Edition):

author], [. (2005). A synthetic and computational investigation of pentacycloundecane amino acid derivatives. (Thesis). University of KwaZulu-Natal. Retrieved from http://hdl.handle.net/10413/1682

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

author], [No. “A synthetic and computational investigation of pentacycloundecane amino acid derivatives. ” 2005. Thesis, University of KwaZulu-Natal. Accessed December 08, 2019. http://hdl.handle.net/10413/1682.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

author], [No. “A synthetic and computational investigation of pentacycloundecane amino acid derivatives. ” 2005. Web. 08 Dec 2019.

Vancouver:

author] [. A synthetic and computational investigation of pentacycloundecane amino acid derivatives. [Internet] [Thesis]. University of KwaZulu-Natal; 2005. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10413/1682.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

author] [. A synthetic and computational investigation of pentacycloundecane amino acid derivatives. [Thesis]. University of KwaZulu-Natal; 2005. Available from: http://hdl.handle.net/10413/1682

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

16. Stenzel, Peter. The amino acid sequence of the alpha chain of opossum hemoglobin.

Degree: PhD, 1974, Oregon Health Sciences University

URL: doi:10.6083/M4ZC8133 ; http://digitalcommons.ohsu.edu/etd/2508

Subjects/Keywords: Hemoglobins – chemistry; Amino Acid Sequence; Opossums

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APA (6^th Edition):

Stenzel, P. (1974). The amino acid sequence of the alpha chain of opossum hemoglobin. (Doctoral Dissertation). Oregon Health Sciences University. Retrieved from doi:10.6083/M4ZC8133 ; http://digitalcommons.ohsu.edu/etd/2508

Chicago Manual of Style (16^th Edition):

Stenzel, Peter. “The amino acid sequence of the alpha chain of opossum hemoglobin.” 1974. Doctoral Dissertation, Oregon Health Sciences University. Accessed December 08, 2019. doi:10.6083/M4ZC8133 ; http://digitalcommons.ohsu.edu/etd/2508.

MLA Handbook (7^th Edition):

Stenzel, Peter. “The amino acid sequence of the alpha chain of opossum hemoglobin.” 1974. Web. 08 Dec 2019.

Vancouver:

Stenzel P. The amino acid sequence of the alpha chain of opossum hemoglobin. [Internet] [Doctoral dissertation]. Oregon Health Sciences University; 1974. [cited 2019 Dec 08]. Available from: doi:10.6083/M4ZC8133 ; http://digitalcommons.ohsu.edu/etd/2508.

Council of Science Editors:

Stenzel P. The amino acid sequence of the alpha chain of opossum hemoglobin. [Doctoral Dissertation]. Oregon Health Sciences University; 1974. Available from: doi:10.6083/M4ZC8133 ; http://digitalcommons.ohsu.edu/etd/2508

East Carolina University

17. Garapati, Sri Ramya. Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity.

Degree: 2010, East Carolina University

URL: http://hdl.handle.net/10342/2916

► Prothymosin-alpha (ProT[alpha]) is a protein mainly located in the nucleus of the cells. Though its exact function is not known, it is believed to be… (more)

▼ Prothymosin-alpha (ProT[alpha]) is a protein mainly located in the nucleus of the cells. Though its exact function is not known, it is believed to be involved in cell proliferation. The ability of this protein to inhibit HIV replication in macrophages cells was discovered recently. Apart from the full length protein, a peptide derived from central region of it (from residues 50-89) is shown to inhibit HIV in a dose dependent manner. The central region of the protein (residues 50-89) has a combined total of 26 glutamic acid (Glu) and aspartic acid (Asp) residues which imparts high negative charge and acidity to the peptide. ProT[alpha] 50-89 peptide was synthesized to reconfirm its anti-HIV activity. Along with it three other peptide sequences (Polyglutamic acid, ProT[alpha](50-105) and AlexFluor488-ProT[alpha](51-89)) were synthesized in order to understand the features that give the protein its anti-HIV activity. They were synthesized to understand if high negative charge and entry of the peptide into the nucleus are required for protein's anti-HIV activity. All the sequences were synthesized using Solid Phase Peptide Synthesis coupled with a 9-Fluorenylmethoxycarbonyl (Fmoc) protecting strategy. Synthesis of ProT[alpha](50-89) was carried out on Microwave synthesizer whereas ProT[alpha](50-105) and the Polyglutamic acid sequence were synthesized using an automated synthesizer. During the synthesis of ProT[alpha](50-105) with a new protecting group strategy, we encountered unexpected formation of a glutarimide between residues 68 and 69 which was further resolved. Purification of these sequences was performed using Reverse-Phase High Performance Liquid Chromatography (RP-HPLC) or Strong Anion Exchange Chromatography (SAX) and characterized with Electrospray Ionization-Mass Spectrometry (ESI-MS). Samples obtained from SAX contained salt and were desalted by dialysis for 6 hours. Activity testing was done on two of the sequences. Results from these experiments reconfirmed the anti-HIV activity of ProT[alpha](50-89)N50W and also suggest that there is some sequence specificity to the peptide's ability to inhibit HIV replication in the post-integration step. Results demonstrating the importance of the NLS will also be discussed.

Subjects/Keywords: Chemistry, Biochemistry; Biochemistry; Growth factors; Peptides; Amino acid sequence; Proteins; HIV (Viruses)

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APA (6^th Edition):

Garapati, S. R. (2010). Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity. (Thesis). East Carolina University. Retrieved from http://hdl.handle.net/10342/2916

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Garapati, Sri Ramya. “Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity.” 2010. Thesis, East Carolina University. Accessed December 08, 2019. http://hdl.handle.net/10342/2916.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Garapati, Sri Ramya. “Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity.” 2010. Web. 08 Dec 2019.

Vancouver:

Garapati SR. Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity. [Internet] [Thesis]. East Carolina University; 2010. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10342/2916.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Garapati SR. Prothymosin-Alpha : Features of the protein sequence that contribute to the anti-HIV Activity. [Thesis]. East Carolina University; 2010. Available from: http://hdl.handle.net/10342/2916

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Hawaii – Manoa

18. Dharmasiri, Sunethra. Molecular cloning and characterization of nucleoside diphosphate kinase in cultured sugarcane cells.

Degree: PhD, 2009, University of Hawaii – Manoa

URL: http://hdl.handle.net/10125/9478

►

Microfiche.

xii, 124 leaves, bound photos. 29 cm

A low molecular weight autophosphorylating protein (pp18) in cultured sugarcane cells was identified and characterized as nucleoside… (more)

Subjects/Keywords: Sugarcane – Physiology; Heat shock proteins; Phosphorylation; Amino acid sequence; Plant genetic engineering

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APA (6^th Edition):

Dharmasiri, S. (2009). Molecular cloning and characterization of nucleoside diphosphate kinase in cultured sugarcane cells. (Doctoral Dissertation). University of Hawaii – Manoa. Retrieved from http://hdl.handle.net/10125/9478

Chicago Manual of Style (16^th Edition):

Dharmasiri, Sunethra. “Molecular cloning and characterization of nucleoside diphosphate kinase in cultured sugarcane cells.” 2009. Doctoral Dissertation, University of Hawaii – Manoa. Accessed December 08, 2019. http://hdl.handle.net/10125/9478.

MLA Handbook (7^th Edition):

Dharmasiri, Sunethra. “Molecular cloning and characterization of nucleoside diphosphate kinase in cultured sugarcane cells.” 2009. Web. 08 Dec 2019.

Vancouver:

Dharmasiri S. Molecular cloning and characterization of nucleoside diphosphate kinase in cultured sugarcane cells. [Internet] [Doctoral dissertation]. University of Hawaii – Manoa; 2009. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10125/9478.

Council of Science Editors:

Dharmasiri S. Molecular cloning and characterization of nucleoside diphosphate kinase in cultured sugarcane cells. [Doctoral Dissertation]. University of Hawaii – Manoa; 2009. Available from: http://hdl.handle.net/10125/9478

University of Hong Kong

19. Tung, Wai Na, Viola. Sequence analysis and modelling of the gp130 cytokines and receptors.

Degree: Master of Medical Sciences, 2004, University of Hong Kong

URL: Tung, W. N. V. [董維娜]. (2004). Sequence analysis and modelling of the gp130 cytokines and receptors. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b3197225 ; http://dx.doi.org/10.5353/th_b3197225 ; http://hdl.handle.net/10722/27592

published_or_final_version

Medical Sciences

Master

Master of Medical Sciences

Subjects/Keywords: Cytokines - Receptors.; Amino acid sequence.; Cytokines

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APA (6^th Edition):

Tung, Wai Na, V. (2004). Sequence analysis and modelling of the gp130 cytokines and receptors. (Masters Thesis). University of Hong Kong. Retrieved from Tung, W. N. V. [董維娜]. (2004). Sequence analysis and modelling of the gp130 cytokines and receptors. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b3197225 ; http://dx.doi.org/10.5353/th_b3197225 ; http://hdl.handle.net/10722/27592

Chicago Manual of Style (16^th Edition):

Tung, Wai Na, Viola. “Sequence analysis and modelling of the gp130 cytokines and receptors.” 2004. Masters Thesis, University of Hong Kong. Accessed December 08, 2019. Tung, W. N. V. [董維娜]. (2004). Sequence analysis and modelling of the gp130 cytokines and receptors. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b3197225 ; http://dx.doi.org/10.5353/th_b3197225 ; http://hdl.handle.net/10722/27592.

MLA Handbook (7^th Edition):

Tung, Wai Na, Viola. “Sequence analysis and modelling of the gp130 cytokines and receptors.” 2004. Web. 08 Dec 2019.

Vancouver:

Tung, Wai Na V. Sequence analysis and modelling of the gp130 cytokines and receptors. [Internet] [Masters thesis]. University of Hong Kong; 2004. [cited 2019 Dec 08]. Available from: Tung, W. N. V. [董維娜]. (2004). Sequence analysis and modelling of the gp130 cytokines and receptors. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b3197225 ; http://dx.doi.org/10.5353/th_b3197225 ; http://hdl.handle.net/10722/27592.

Council of Science Editors:

Tung, Wai Na V. Sequence analysis and modelling of the gp130 cytokines and receptors. [Masters Thesis]. University of Hong Kong; 2004. Available from: Tung, W. N. V. [董維娜]. (2004). Sequence analysis and modelling of the gp130 cytokines and receptors. (Thesis). University of Hong Kong, Pokfulam, Hong Kong SAR. Retrieved from http://dx.doi.org/10.5353/th_b3197225 ; http://dx.doi.org/10.5353/th_b3197225 ; http://hdl.handle.net/10722/27592

Massey University

20. Richardson, Barry Charles. The amino acid sequence of the tryptic peptides of the f1 bacteriophage coat protein : a thesis submitted to Massey University of the Manawatu in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry .

Degree: 1970, Massey University

URL: http://hdl.handle.net/10179/11663

► Five major peptides were isolated by paper electrophoresis from a tryptic digestion of purified fl bacteriophage coat protein. The amino acid composition of the peptides… (more)

Subjects/Keywords: Amino acid sequence; Bacteriophage f1 – Genetics

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APA (6^th Edition):

Richardson, B. C. (1970). The amino acid sequence of the tryptic peptides of the f1 bacteriophage coat protein : a thesis submitted to Massey University of the Manawatu in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry . (Thesis). Massey University. Retrieved from http://hdl.handle.net/10179/11663

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Richardson, Barry Charles. “The amino acid sequence of the tryptic peptides of the f1 bacteriophage coat protein : a thesis submitted to Massey University of the Manawatu in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry .” 1970. Thesis, Massey University. Accessed December 08, 2019. http://hdl.handle.net/10179/11663.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Richardson, Barry Charles. “The amino acid sequence of the tryptic peptides of the f1 bacteriophage coat protein : a thesis submitted to Massey University of the Manawatu in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry .” 1970. Web. 08 Dec 2019.

Vancouver:

Richardson BC. The amino acid sequence of the tryptic peptides of the f1 bacteriophage coat protein : a thesis submitted to Massey University of the Manawatu in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry . [Internet] [Thesis]. Massey University; 1970. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/10179/11663.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Richardson BC. The amino acid sequence of the tryptic peptides of the f1 bacteriophage coat protein : a thesis submitted to Massey University of the Manawatu in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry . [Thesis]. Massey University; 1970. Available from: http://hdl.handle.net/10179/11663

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Michigan State University

21. Guo, Jiarong. Twilight zone : protein sequence search and classification.

Degree: MS, Fisheries and Wildlife, 2010, Michigan State University

URL: http://etd.lib.msu.edu/islandora/object/etd:10294

Subjects/Keywords: Homology (Biology); Amino acid sequence; Proteins

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APA (6^th Edition):

Guo, J. (2010). Twilight zone : protein sequence search and classification. (Masters Thesis). Michigan State University. Retrieved from http://etd.lib.msu.edu/islandora/object/etd:10294

Chicago Manual of Style (16^th Edition):

Guo, Jiarong. “Twilight zone : protein sequence search and classification.” 2010. Masters Thesis, Michigan State University. Accessed December 08, 2019. http://etd.lib.msu.edu/islandora/object/etd:10294.

MLA Handbook (7^th Edition):

Guo, Jiarong. “Twilight zone : protein sequence search and classification.” 2010. Web. 08 Dec 2019.

Vancouver:

Guo J. Twilight zone : protein sequence search and classification. [Internet] [Masters thesis]. Michigan State University; 2010. [cited 2019 Dec 08]. Available from: http://etd.lib.msu.edu/islandora/object/etd:10294.

Council of Science Editors:

Guo J. Twilight zone : protein sequence search and classification. [Masters Thesis]. Michigan State University; 2010. Available from: http://etd.lib.msu.edu/islandora/object/etd:10294

22. Roscoe, Benjamin P. Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation.

Degree: Biochemistry and Molecular Pharmacology, Biochemistry and Molecular Pharmacology, 2014, U of Massachusetts : Med

URL: http://escholarship.umassmed.edu/gsbs_diss/716

► The primary amino acid sequence of a protein governs its specific cellular functions. Since the cracking of the genetic code in the late 1950’s,… (more)

Subjects/Keywords: Amino Acid Sequence; Mutagenesis; Point Mutation; Protein Sequence Analysis; Ubiquitin; Biochemistry; Cellular and Molecular Physiology; Molecular Biology; Molecular Genetics

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6^th Edition):

Roscoe, B. P. (2014). Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation. (Doctoral Dissertation). U of Massachusetts : Med. Retrieved from http://escholarship.umassmed.edu/gsbs_diss/716

Chicago Manual of Style (16^th Edition):

Roscoe, Benjamin P. “Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation.” 2014. Doctoral Dissertation, U of Massachusetts : Med. Accessed December 08, 2019. http://escholarship.umassmed.edu/gsbs_diss/716.

MLA Handbook (7^th Edition):

Roscoe, Benjamin P. “Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation.” 2014. Web. 08 Dec 2019.

Vancouver:

Roscoe BP. Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation. [Internet] [Doctoral dissertation]. U of Massachusetts : Med; 2014. [cited 2019 Dec 08]. Available from: http://escholarship.umassmed.edu/gsbs_diss/716.

Council of Science Editors:

Roscoe BP. Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation. [Doctoral Dissertation]. U of Massachusetts : Med; 2014. Available from: http://escholarship.umassmed.edu/gsbs_diss/716

University of Texas Southwestern Medical Center

23. Wang, Yong. PROCAIN: Protein Profile Comparison with Assisting Information.

Degree: 2009, University of Texas Southwestern Medical Center

URL: http://hdl.handle.net/2152.5/588

► Detection of remote sequence homology is essential for the accurate inference of protein structure, function, and evolution. The most sensitive detection methods involve the comparison… (more)

Subjects/Keywords: Software; Sequence Homology, Amino Acid; Sequence Alignment

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APA (6^th Edition):

Wang, Y. (2009). PROCAIN: Protein Profile Comparison with Assisting Information. (Thesis). University of Texas Southwestern Medical Center. Retrieved from http://hdl.handle.net/2152.5/588

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Wang, Yong. “PROCAIN: Protein Profile Comparison with Assisting Information.” 2009. Thesis, University of Texas Southwestern Medical Center. Accessed December 08, 2019. http://hdl.handle.net/2152.5/588.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Wang, Yong. “PROCAIN: Protein Profile Comparison with Assisting Information.” 2009. Web. 08 Dec 2019.

Vancouver:

Wang Y. PROCAIN: Protein Profile Comparison with Assisting Information. [Internet] [Thesis]. University of Texas Southwestern Medical Center; 2009. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/2152.5/588.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Wang Y. PROCAIN: Protein Profile Comparison with Assisting Information. [Thesis]. University of Texas Southwestern Medical Center; 2009. Available from: http://hdl.handle.net/2152.5/588

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of New South Wales

24. Naznin, Farhana. Evolutionary Algorithms for Multiple Sequence Alignments.

Degree: Engineering & Information Technology, 2011, University of New South Wales

URL: http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true

► Multiple sequence alignment (MSA) is a valuable technique for studying molecular evolution, analysing sequence structure, and drug design. To date, in the literature, many algorithms… (more)

▼ Multiple sequence alignment (MSA) is a valuable technique for studying molecular evolution, analysing sequence structure, and drug design. To date, in the literature, many algorithms for solving the MSA problems, based on progressive, iterative and stochastic approaches, have been proposed. As their performances vary depending on the characteristics of the test problems, there is a need for an effective algorithm that consistently performs better over a range of problems. Therefore, the objective of this thesis was to develop a new algorithm for solving MSA problems more effectively. However, our systematic analyses of the existing approaches encouraged us to propose not only a new algorithm but also the sequential development of increasingly effective algorithms. Firstly, this thesis presents a new iterative method, namely MSA-IT, which has two new mechanisms: the first generates guide trees with randomly selected sequences; and the second shuffles the sequences inside these trees, within an iterative process, to generate new and better guide trees. This method is simple and fast. Its performance was tested on standard benchmark problems and, compared with well-known algorithms, was convincing. However, as its solutions made clear that there was room for further improvement, we developed another algorithm based on a genetic algorithm with a progressive alignment approach, namely GAPAM. In GAPAM, the initial population is generated using the two mechanisms used in MSA-IT, and two new genetic search operators are implemented. To test its performance on benchmark datasets, the results from GAPAM were compared withthose from MSA-IT as well as the well-known algorithms. The comparisons showed that GAPAM not only provides better solutions than MSA-IT and the other algorithms for most of the test problems, but also achieves an overall better performance. However, analyses of the results uncovered the fact that, for sequences of longer length, GAPAM was trapped in local optima. To overcome this local optima problem, the vertical decomposition technique was used with GAPAM. In vertical decomposition, sequences are vertically divided into a number of shorter length MSA problems which are solved individually using a guide tree approach and then joined them together to form a complete MSA. This technique was applied to the solutions of both initial and child generations inside a GA and its algorithm called the Vertical Decomposition with Genetic Algorithm (VDGA). The performance of this method was compared with those of GAPAM, MSA-IT and the well-known algorithms which confirmed that VDGA outperformed all of them. The results also showed that, for shorter sequences, GAPAM and VDGA were not significantly different, and it was established that VDGA with three vertical divisions was the most successful variant compared with the other divisions considered. In this thesis, the Weigthed Sum of Pairs method is taken as the fitness measure and the benchmark datasets from the BAliBase 2.0 database are used for experimentation. For… Advisors/Committee Members: Sarker, Ruhul, Engineering & Information Technology, Australian Defence Force Academy, UNSW, Essam, Daryl, Engineering & Information Technology, Australian Defence Force Academy, UNSW.

Subjects/Keywords: Amino Acid Sequences; Deoxyribonucleic Acid; Ribonucleic Acid; Dynamic Algorithm / Programming; Pairwise Sequence Alignment; Guide Tree / Progressive Alignment Approach; Multiple Sequence Alignment; Iterative Approach; Genetic Algorithm

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APA (6^th Edition):

Naznin, F. (2011). Evolutionary Algorithms for Multiple Sequence Alignments. (Doctoral Dissertation). University of New South Wales. Retrieved from http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true

Chicago Manual of Style (16^th Edition):

Naznin, Farhana. “Evolutionary Algorithms for Multiple Sequence Alignments.” 2011. Doctoral Dissertation, University of New South Wales. Accessed December 08, 2019. http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true.

MLA Handbook (7^th Edition):

Naznin, Farhana. “Evolutionary Algorithms for Multiple Sequence Alignments.” 2011. Web. 08 Dec 2019.

Vancouver:

Naznin F. Evolutionary Algorithms for Multiple Sequence Alignments. [Internet] [Doctoral dissertation]. University of New South Wales; 2011. [cited 2019 Dec 08]. Available from: http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true.

Council of Science Editors:

Naznin F. Evolutionary Algorithms for Multiple Sequence Alignments. [Doctoral Dissertation]. University of New South Wales; 2011. Available from: http://handle.unsw.edu.au/1959.4/51535 ; https://unsworks.unsw.edu.au/fapi/datastream/unsworks:10222/SOURCE01?view=true

Indian Institute of Science

25. Rajagopal, A. Designed Synthetic Peptides : Models For Studies Of Conformational Transitions And Aromatic Interactions.

Degree: 2012, Indian Institute of Science

URL: http://hdl.handle.net/2005/2449

► This thesis set out to explore the conformational properties of short designed peptide sequences, in which transitions between structural states may be anticipated. The use… (more)

▼ This thesis set out to explore the conformational properties of short designed peptide sequences, in which transitions between structural states may be anticipated. The use of conformationally constrained residues like α-aminoisobutyric acid (Aib) and D-proline (DPro) permits the design of model sequences for structural studies. The principle of imposing conformational constraints by multiple substitutions at backbone atoms in aminoacid residues may also be extended to the higher homologs of α-amino acids, namely β and residues. The experimental results presented in this thesis also examine the potential of using cross-strand interactions between aromatic residues as a probe of structure in designed peptide β-hairpins. Chapter 1 provides a very brief introduction to the necessary background on which the experimental studies in this thesis are based. Chapter 2 describes studies aimed at establishing chain length effects on helix-hairpin conformational distributions in short synthetic sequences, containing centrally positioned Aib-DAla and Aib-Aib segments.The Aib-DAla dipeptide segment has a tendency to form both type-I'/III' and type-I/III β-turns. The occurrence of prime turns facilitates the formation of β-hairpin conformations, while type-I/III turns can nucleate helix formation. The octapeptide Boc-Leu-Phe-Val-Aib-DAla-Leu-Phe-Val-OMe (1) has been previously shown to form a β-hairpin in the crystalline state and in solution. The effects of sequence truncation have been examined using the model peptides Boc-Phe-Val-Aib-Xxx-Leu-Phe-NHMe (2, 6), Boc-Val-Aib-Xxx-Leu-NHMe (3, 7) and Boc-Aib-Xxx-NHMe (4, 8), where Xxx = DAla, Aib. For peptides with central Aib-Aib segments, Boc-Phe-Val-Aib-Aib-Leu-Phe-NHMe (6), Boc-Val-Aib-Aib-Leu-NHMe (7) and Boc-Aib-Aib-NHMe (8) local helical conformations have been established by NMR studies in both hydrogen bonding (CD3OH) and non-hydrogen bonding (CDCl3) solvents. In contrast, the corresponding hexapeptide Boc-Phe-Val-Aib-DAla-Leu-Phe-Val-NHMe (2) favors helical conformations in CDCl3 and β-hairpin conformations in CD3OH. β-Turn conformations (type-I /III) stabilized by intramolecular 4 1 hydrogen bonds are observed for the peptide Boc-Aib-DAla-NHMe (4) and Boc-Aib-Aib-NHMe (8) in crystals. The tetrapeptide Boc-Val-Aib-Aib-Leu-NHMe (7) adopts an incipient 310-helical conformation stabilized by three 4 1 hydrogen bonds. The peptide Boc-Val-Aib-DAla- Leu-NHMe (3) adopts a novel -turn conformation, stabilized by three intramolecular hydrogen bonds (two 4 1 and one 5 1). The Aib-DAla segment adopts a type-I' β-turn conformation. The observation of the NOE Val(1) NH HNCH3 (5), in CD3OH, suggests that the solid state conformation of peptide 3 is maintained in methanol solutions. Peptide hairpins provide an ideal scaffold for exploring cross-strand interactions between residues on facing antiparallel strands. Chapter 3 reports studies directed towards probing, aromatic interactions between facing Phe residues, positioned at the non-hydrogen bonding positions in… Advisors/Committee Members: Balaram, P.

Subjects/Keywords: Synthetic Peptides; Peptides - Aromatic Interactions; Amino Acid Residues; Peptide Beta-Hairpins; Peptides - Conformational Properties; Amino Acid Sequence; Peptides - Synthesis; β-Hairpins; Beta Hairpins; Hybrid Peptides; Biochemistry

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6^th Edition):

Rajagopal, A. (2012). Designed Synthetic Peptides : Models For Studies Of Conformational Transitions And Aromatic Interactions. (Thesis). Indian Institute of Science. Retrieved from http://hdl.handle.net/2005/2449

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Rajagopal, A. “Designed Synthetic Peptides : Models For Studies Of Conformational Transitions And Aromatic Interactions.” 2012. Thesis, Indian Institute of Science. Accessed December 08, 2019. http://hdl.handle.net/2005/2449.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Rajagopal, A. “Designed Synthetic Peptides : Models For Studies Of Conformational Transitions And Aromatic Interactions.” 2012. Web. 08 Dec 2019.

Vancouver:

Rajagopal A. Designed Synthetic Peptides : Models For Studies Of Conformational Transitions And Aromatic Interactions. [Internet] [Thesis]. Indian Institute of Science; 2012. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/2005/2449.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Rajagopal A. Designed Synthetic Peptides : Models For Studies Of Conformational Transitions And Aromatic Interactions. [Thesis]. Indian Institute of Science; 2012. Available from: http://hdl.handle.net/2005/2449

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Pretoria

26. [No author]. Protein secondary structure prediction using amino acid regularities .

Degree: 2009, University of Pretoria

URL: http://upetd.up.ac.za/thesis/available/etd-01232009-120040/

► The protein folding problem is examined. Specifically, the problem of predicting protein secondary structure from the amino acid sequence is investigated. A literature study is… (more)

Subjects/Keywords: Amino acid sequence; Neural network; Classification; Secondary structure; Protein secondary structure prediction; Bioinformatics; Pattern recognition; Protein folding problem; Amino acid; Protein; UCTD

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APA (6^th Edition):

author], [. (2009). Protein secondary structure prediction using amino acid regularities . (Masters Thesis). University of Pretoria. Retrieved from http://upetd.up.ac.za/thesis/available/etd-01232009-120040/

Chicago Manual of Style (16^th Edition):

author], [No. “Protein secondary structure prediction using amino acid regularities .” 2009. Masters Thesis, University of Pretoria. Accessed December 08, 2019. http://upetd.up.ac.za/thesis/available/etd-01232009-120040/.

MLA Handbook (7^th Edition):

author], [No. “Protein secondary structure prediction using amino acid regularities .” 2009. Web. 08 Dec 2019.

Vancouver:

author] [. Protein secondary structure prediction using amino acid regularities . [Internet] [Masters thesis]. University of Pretoria; 2009. [cited 2019 Dec 08]. Available from: http://upetd.up.ac.za/thesis/available/etd-01232009-120040/.

Council of Science Editors:

author] [. Protein secondary structure prediction using amino acid regularities . [Masters Thesis]. University of Pretoria; 2009. Available from: http://upetd.up.ac.za/thesis/available/etd-01232009-120040/

University of KwaZulu-Natal

27. [No author]. Structure and immune recognition of trimeric pre-fusion HIV-1 Env.

Degree: 2014, University of KwaZulu-Natal

URL: http://dx.doi.org/10.1038/nature13808

► The human immunodeficiency virus type 1 (HIV-1) envelope (Env) spike, comprising three gp120 and three gp41 subunits, is a conformational machine that facilitates HIV-1 entry… (more)

Subjects/Keywords: AIDS Vaccines/chemistry.; AIDS Vaccines/immunology.; Amino Acid Sequence.; Cohort Studies.; Crystallography, X-Ray.; Genetic Variation.; Glycosylation.

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APA (6^th Edition):

author], [. (2014). Structure and immune recognition of trimeric pre-fusion HIV-1 Env. (Thesis). University of KwaZulu-Natal. Retrieved from http://dx.doi.org/10.1038/nature13808

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

author], [No. “Structure and immune recognition of trimeric pre-fusion HIV-1 Env. ” 2014. Thesis, University of KwaZulu-Natal. Accessed December 08, 2019. http://dx.doi.org/10.1038/nature13808.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

author], [No. “Structure and immune recognition of trimeric pre-fusion HIV-1 Env. ” 2014. Web. 08 Dec 2019.

Vancouver:

author] [. Structure and immune recognition of trimeric pre-fusion HIV-1 Env. [Internet] [Thesis]. University of KwaZulu-Natal; 2014. [cited 2019 Dec 08]. Available from: http://dx.doi.org/10.1038/nature13808.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

author] [. Structure and immune recognition of trimeric pre-fusion HIV-1 Env. [Thesis]. University of KwaZulu-Natal; 2014. Available from: http://dx.doi.org/10.1038/nature13808

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Texas A&M University

28. Miller, Martha Neal. An investigation into the dissociation dynamics of large molecules.

Degree: MS, chemistry, 2012, Texas A&M University

URL: http://hdl.handle.net/1969.1/ETD-TAMU-1987-THESIS-M6485

Subjects/Keywords: chemistry.; Major chemistry.; Amino acid sequence.; Dissociation.; Peptides - Analysis.

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APA · Chicago · MLA · Vancouver · CSE | Export to Zotero / EndNote / Reference Manager

APA (6^th Edition):

Miller, M. N. (2012). An investigation into the dissociation dynamics of large molecules. (Masters Thesis). Texas A&M University. Retrieved from http://hdl.handle.net/1969.1/ETD-TAMU-1987-THESIS-M6485

Chicago Manual of Style (16^th Edition):

Miller, Martha Neal. “An investigation into the dissociation dynamics of large molecules.” 2012. Masters Thesis, Texas A&M University. Accessed December 08, 2019. http://hdl.handle.net/1969.1/ETD-TAMU-1987-THESIS-M6485.

MLA Handbook (7^th Edition):

Miller, Martha Neal. “An investigation into the dissociation dynamics of large molecules.” 2012. Web. 08 Dec 2019.

Vancouver:

Miller MN. An investigation into the dissociation dynamics of large molecules. [Internet] [Masters thesis]. Texas A&M University; 2012. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-1987-THESIS-M6485.

Council of Science Editors:

Miller MN. An investigation into the dissociation dynamics of large molecules. [Masters Thesis]. Texas A&M University; 2012. Available from: http://hdl.handle.net/1969.1/ETD-TAMU-1987-THESIS-M6485

University of Gothenburg / Göteborgs Universitet

29. Bergman, Claes, 1950-. Amino acid sequence studies of two small blue proteins: stellacyanin and umecyanin.

Degree: 1980, University of Gothenburg / Göteborgs Universitet

URL: http://hdl.handle.net/2077/14327

Subjects/Keywords: Biologi Fysiologi Amino acid sequence; Copper: analysis

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APA (6^th Edition):

Bergman, Claes, 1. (1980). Amino acid sequence studies of two small blue proteins: stellacyanin and umecyanin. (Thesis). University of Gothenburg / Göteborgs Universitet. Retrieved from http://hdl.handle.net/2077/14327

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16^th Edition):

Bergman, Claes, 1950-. “Amino acid sequence studies of two small blue proteins: stellacyanin and umecyanin.” 1980. Thesis, University of Gothenburg / Göteborgs Universitet. Accessed December 08, 2019. http://hdl.handle.net/2077/14327.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7^th Edition):

Bergman, Claes, 1950-. “Amino acid sequence studies of two small blue proteins: stellacyanin and umecyanin.” 1980. Web. 08 Dec 2019.

Vancouver:

Bergman, Claes 1. Amino acid sequence studies of two small blue proteins: stellacyanin and umecyanin. [Internet] [Thesis]. University of Gothenburg / Göteborgs Universitet; 1980. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/2077/14327.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Bergman, Claes 1. Amino acid sequence studies of two small blue proteins: stellacyanin and umecyanin. [Thesis]. University of Gothenburg / Göteborgs Universitet; 1980. Available from: http://hdl.handle.net/2077/14327

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

University of Oklahoma

30. Moreland, Rodney James. Molecular interactions in RNA polymerase II and III transcription systems.

Degree: PhD, Health Sciences Center, 1998, University of Oklahoma

URL: http://hdl.handle.net/11244/5686

► The elongation stage of eukaryotic messenger RNA synthesis is a major site for the regulation of gene expression. Elongation factor Elongin is a member of… (more)

Subjects/Keywords: Chemistry, Biochemistry.; Biology, Molecular.; RNA polymerases.; Amino acid sequence.

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APA (6^th Edition):

Moreland, R. J. (1998). Molecular interactions in RNA polymerase II and III transcription systems. (Doctoral Dissertation). University of Oklahoma. Retrieved from http://hdl.handle.net/11244/5686

Chicago Manual of Style (16^th Edition):

Moreland, Rodney James. “Molecular interactions in RNA polymerase II and III transcription systems.” 1998. Doctoral Dissertation, University of Oklahoma. Accessed December 08, 2019. http://hdl.handle.net/11244/5686.

MLA Handbook (7^th Edition):

Moreland, Rodney James. “Molecular interactions in RNA polymerase II and III transcription systems.” 1998. Web. 08 Dec 2019.

Vancouver:

Moreland RJ. Molecular interactions in RNA polymerase II and III transcription systems. [Internet] [Doctoral dissertation]. University of Oklahoma; 1998. [cited 2019 Dec 08]. Available from: http://hdl.handle.net/11244/5686.

Council of Science Editors:

Moreland RJ. Molecular interactions in RNA polymerase II and III transcription systems. [Doctoral Dissertation]. University of Oklahoma; 1998. Available from: http://hdl.handle.net/11244/5686

Open Access Theses and Dissertations