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You searched for +publisher:"Vanderbilt University" +contributor:("Daniel C. Liebler"). Showing records 1 – 13 of 13 total matches.

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Vanderbilt University

1. Wang, Dong. Basophile: accurate fragment charge state prediction improves peptide identification rates.

Degree: MS, Biomedical Informatics, 2012, Vanderbilt University

 In shotgun proteomics, database search algorithms rely on fragmentation models to predict fragment ions that should be observed for a given peptide sequence. The most… (more)

Subjects/Keywords: fragmentation; mass spectrometry; proteomics; ordinal regression

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APA (6th Edition):

Wang, D. (2012). Basophile: accurate fragment charge state prediction improves peptide identification rates. (Thesis). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/14397

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Wang, Dong. “Basophile: accurate fragment charge state prediction improves peptide identification rates.” 2012. Thesis, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/14397.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Wang, Dong. “Basophile: accurate fragment charge state prediction improves peptide identification rates.” 2012. Web. 19 Jan 2021.

Vancouver:

Wang D. Basophile: accurate fragment charge state prediction improves peptide identification rates. [Internet] [Thesis]. Vanderbilt University; 2012. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/14397.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Wang D. Basophile: accurate fragment charge state prediction improves peptide identification rates. [Thesis]. Vanderbilt University; 2012. Available from: http://hdl.handle.net/1803/14397

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Vanderbilt University

2. Ma, Zeqiang. Algorithms for shotgun proteomics spectral identification and quality assessment.

Degree: PhD, Biomedical Informatics, 2012, Vanderbilt University

 Tandem mass spectrometry-based shotgun proteomics has become a widespread technology for analyzing complex protein mixtures. Assessing the full information content of shotgun proteomics experiments has… (more)

Subjects/Keywords: mass spectrometry; proteomics; bioinformatics; quality assessment; quality control; peptide identification

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APA (6th Edition):

Ma, Z. (2012). Algorithms for shotgun proteomics spectral identification and quality assessment. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/11036

Chicago Manual of Style (16th Edition):

Ma, Zeqiang. “Algorithms for shotgun proteomics spectral identification and quality assessment.” 2012. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/11036.

MLA Handbook (7th Edition):

Ma, Zeqiang. “Algorithms for shotgun proteomics spectral identification and quality assessment.” 2012. Web. 19 Jan 2021.

Vancouver:

Ma Z. Algorithms for shotgun proteomics spectral identification and quality assessment. [Internet] [Doctoral dissertation]. Vanderbilt University; 2012. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/11036.

Council of Science Editors:

Ma Z. Algorithms for shotgun proteomics spectral identification and quality assessment. [Doctoral Dissertation]. Vanderbilt University; 2012. Available from: http://hdl.handle.net/1803/11036


Vanderbilt University

3. Myers, Matthew V. Proteomic Signatures of Epidermal Growth Factor Receptor Signaling.

Degree: PhD, Biochemistry, 2012, Vanderbilt University

 Analysis of cellular signaling networks typically involves targeted measurements of phosphorylated protein intermediates. However, phosphoproteomic analyses usually require affinity enrichment of phosphopeptides and can be… (more)

Subjects/Keywords: mass spectrometry; quantitation; proteomics; biochemistry; EGFR

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APA (6th Edition):

Myers, M. V. (2012). Proteomic Signatures of Epidermal Growth Factor Receptor Signaling. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/10475

Chicago Manual of Style (16th Edition):

Myers, Matthew V. “Proteomic Signatures of Epidermal Growth Factor Receptor Signaling.” 2012. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/10475.

MLA Handbook (7th Edition):

Myers, Matthew V. “Proteomic Signatures of Epidermal Growth Factor Receptor Signaling.” 2012. Web. 19 Jan 2021.

Vancouver:

Myers MV. Proteomic Signatures of Epidermal Growth Factor Receptor Signaling. [Internet] [Doctoral dissertation]. Vanderbilt University; 2012. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/10475.

Council of Science Editors:

Myers MV. Proteomic Signatures of Epidermal Growth Factor Receptor Signaling. [Doctoral Dissertation]. Vanderbilt University; 2012. Available from: http://hdl.handle.net/1803/10475


Vanderbilt University

4. Burkewitz, Kristopher. Characterization of hypertonic stress-induced protein damage and the cellular mechanisms for defense and repair in C. elegans.

Degree: PhD, Pharmacology, 2012, Vanderbilt University

 Proteostasis is maintained by a complex network of genes and processes which includes core synthesis and degradation machineries as well as chemical and protein chaperones.… (more)

Subjects/Keywords: C. elegans; proteostasis; organic osmolytes; protein aggregation; osmotic stress; hypertonic stress

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APA (6th Edition):

Burkewitz, K. (2012). Characterization of hypertonic stress-induced protein damage and the cellular mechanisms for defense and repair in C. elegans. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/12205

Chicago Manual of Style (16th Edition):

Burkewitz, Kristopher. “Characterization of hypertonic stress-induced protein damage and the cellular mechanisms for defense and repair in C. elegans.” 2012. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/12205.

MLA Handbook (7th Edition):

Burkewitz, Kristopher. “Characterization of hypertonic stress-induced protein damage and the cellular mechanisms for defense and repair in C. elegans.” 2012. Web. 19 Jan 2021.

Vancouver:

Burkewitz K. Characterization of hypertonic stress-induced protein damage and the cellular mechanisms for defense and repair in C. elegans. [Internet] [Doctoral dissertation]. Vanderbilt University; 2012. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/12205.

Council of Science Editors:

Burkewitz K. Characterization of hypertonic stress-induced protein damage and the cellular mechanisms for defense and repair in C. elegans. [Doctoral Dissertation]. Vanderbilt University; 2012. Available from: http://hdl.handle.net/1803/12205


Vanderbilt University

5. Camarillo, Jeannie Marie. Functional implications of electrophilic protein adducts.

Degree: PhD, Biochemistry, 2016, Vanderbilt University

 Oxidative stress is a contributing factor in a number of chronic diseases, including cancer, atherosclerosis, and neurodegenerative diseases. Lipid peroxidation that occurs during periods of… (more)

Subjects/Keywords: hydroxynonenal; lipid peroxidation; click chemistry; lipid electrophiles; oxononenal

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APA (6th Edition):

Camarillo, J. M. (2016). Functional implications of electrophilic protein adducts. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/14578

Chicago Manual of Style (16th Edition):

Camarillo, Jeannie Marie. “Functional implications of electrophilic protein adducts.” 2016. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/14578.

MLA Handbook (7th Edition):

Camarillo, Jeannie Marie. “Functional implications of electrophilic protein adducts.” 2016. Web. 19 Jan 2021.

Vancouver:

Camarillo JM. Functional implications of electrophilic protein adducts. [Internet] [Doctoral dissertation]. Vanderbilt University; 2016. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/14578.

Council of Science Editors:

Camarillo JM. Functional implications of electrophilic protein adducts. [Doctoral Dissertation]. Vanderbilt University; 2016. Available from: http://hdl.handle.net/1803/14578


Vanderbilt University

6. Bruntz, Ronald Chase. Insights into the Molecular Mechanisms of Phospholipase D-Mediated Cancer Cell Survival.

Degree: PhD, Pharmacology, 2014, Vanderbilt University

 The production of bioactive lipids by phospholipases has long been appreciated as an important mode of cellular communication. Phospholipase D (PLD) enzymes hydrolyze phosphatidylcholine to… (more)

Subjects/Keywords: phospholipase D; phosphatidic acid; cancer; Akt; cell signaling; autophagy

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APA (6th Edition):

Bruntz, R. C. (2014). Insights into the Molecular Mechanisms of Phospholipase D-Mediated Cancer Cell Survival. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/10427

Chicago Manual of Style (16th Edition):

Bruntz, Ronald Chase. “Insights into the Molecular Mechanisms of Phospholipase D-Mediated Cancer Cell Survival.” 2014. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/10427.

MLA Handbook (7th Edition):

Bruntz, Ronald Chase. “Insights into the Molecular Mechanisms of Phospholipase D-Mediated Cancer Cell Survival.” 2014. Web. 19 Jan 2021.

Vancouver:

Bruntz RC. Insights into the Molecular Mechanisms of Phospholipase D-Mediated Cancer Cell Survival. [Internet] [Doctoral dissertation]. Vanderbilt University; 2014. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/10427.

Council of Science Editors:

Bruntz RC. Insights into the Molecular Mechanisms of Phospholipase D-Mediated Cancer Cell Survival. [Doctoral Dissertation]. Vanderbilt University; 2014. Available from: http://hdl.handle.net/1803/10427


Vanderbilt University

7. Hutton, Josiah Ewing III. Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer.

Degree: PhD, Biochemistry, 2016, Vanderbilt University

 BIOCHEMISTRY Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer Josiah Ewing Hutton, III. Dissertation under the direction of Professor Daniel C. Liebler Analysis… (more)

Subjects/Keywords: parallel reaction monitoring; analytical proteomics; Warburg effect; Metabolic reprogramming; multiple reaction monitoring; colorectal cancer

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APA (6th Edition):

Hutton, J. E. I. (2016). Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/13946

Chicago Manual of Style (16th Edition):

Hutton, Josiah Ewing III. “Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer.” 2016. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/13946.

MLA Handbook (7th Edition):

Hutton, Josiah Ewing III. “Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer.” 2016. Web. 19 Jan 2021.

Vancouver:

Hutton JEI. Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer. [Internet] [Doctoral dissertation]. Vanderbilt University; 2016. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/13946.

Council of Science Editors:

Hutton JEI. Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer. [Doctoral Dissertation]. Vanderbilt University; 2016. Available from: http://hdl.handle.net/1803/13946


Vanderbilt University

8. Ma, Zeqiang. IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering.

Degree: MS, Biomedical Informatics, 2009, Vanderbilt University

 Tandem mass spectrometry-based shotgun proteomics has become a widespread technology for analyzing complex protein mixtures. A number of database searching algorithms have been developed to… (more)

Subjects/Keywords: parsimony; protein assembly; protein inference; false discovery rate; bioinformatics

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APA (6th Edition):

Ma, Z. (2009). IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering. (Thesis). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/12982

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Chicago Manual of Style (16th Edition):

Ma, Zeqiang. “IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering.” 2009. Thesis, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/12982.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

MLA Handbook (7th Edition):

Ma, Zeqiang. “IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering.” 2009. Web. 19 Jan 2021.

Vancouver:

Ma Z. IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering. [Internet] [Thesis]. Vanderbilt University; 2009. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/12982.

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation

Council of Science Editors:

Ma Z. IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering. [Thesis]. Vanderbilt University; 2009. Available from: http://hdl.handle.net/1803/12982

Note: this citation may be lacking information needed for this citation format:
Not specified: Masters Thesis or Doctoral Dissertation


Vanderbilt University

9. Wang, Jingqi. Synthetic Studies on Apoptolidin Congeners in Support of Target Identification of A Cell Selective Cytotoxic Agent.

Degree: PhD, Chemistry, 2009, Vanderbilt University

 As a selective apoptosis inducer, apoptolidin A was isolated from Nocardiopsis Sp. by Japanese chemists in 1997. Khosla and coworkers have demonstrated that apoptolidin A… (more)

Subjects/Keywords: Target identification; Apoptosis; Apoptolidin; Apoptolidinone; Biological activity

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APA (6th Edition):

Wang, J. (2009). Synthetic Studies on Apoptolidin Congeners in Support of Target Identification of A Cell Selective Cytotoxic Agent. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/14339

Chicago Manual of Style (16th Edition):

Wang, Jingqi. “Synthetic Studies on Apoptolidin Congeners in Support of Target Identification of A Cell Selective Cytotoxic Agent.” 2009. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/14339.

MLA Handbook (7th Edition):

Wang, Jingqi. “Synthetic Studies on Apoptolidin Congeners in Support of Target Identification of A Cell Selective Cytotoxic Agent.” 2009. Web. 19 Jan 2021.

Vancouver:

Wang J. Synthetic Studies on Apoptolidin Congeners in Support of Target Identification of A Cell Selective Cytotoxic Agent. [Internet] [Doctoral dissertation]. Vanderbilt University; 2009. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/14339.

Council of Science Editors:

Wang J. Synthetic Studies on Apoptolidin Congeners in Support of Target Identification of A Cell Selective Cytotoxic Agent. [Doctoral Dissertation]. Vanderbilt University; 2009. Available from: http://hdl.handle.net/1803/14339


Vanderbilt University

10. Parson, Whitney Beth. Structural separations of endogenous and exogenous compounds directly from tissue sections by ion mobility – mass spectrometry.

Degree: PhD, Biochemistry, 2010, Vanderbilt University

 Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry (MS) can provide the spatial distribution, relative abundance, and molecular identity of thousands of analytes directly from tissue sections.… (more)

Subjects/Keywords: mass spectrometry; phospholipids; peptides; imaging mass spectrometry; MALDI

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APA (6th Edition):

Parson, W. B. (2010). Structural separations of endogenous and exogenous compounds directly from tissue sections by ion mobility – mass spectrometry. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/13370

Chicago Manual of Style (16th Edition):

Parson, Whitney Beth. “Structural separations of endogenous and exogenous compounds directly from tissue sections by ion mobility – mass spectrometry.” 2010. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/13370.

MLA Handbook (7th Edition):

Parson, Whitney Beth. “Structural separations of endogenous and exogenous compounds directly from tissue sections by ion mobility – mass spectrometry.” 2010. Web. 19 Jan 2021.

Vancouver:

Parson WB. Structural separations of endogenous and exogenous compounds directly from tissue sections by ion mobility – mass spectrometry. [Internet] [Doctoral dissertation]. Vanderbilt University; 2010. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/13370.

Council of Science Editors:

Parson WB. Structural separations of endogenous and exogenous compounds directly from tissue sections by ion mobility – mass spectrometry. [Doctoral Dissertation]. Vanderbilt University; 2010. Available from: http://hdl.handle.net/1803/13370


Vanderbilt University

11. Burnum, Kristin Elizabeth. Detecting spatial and temporal distributions of lipids and proteins during embryo implantation by MALDI Imaging Mass Spectrometry.

Degree: PhD, Biochemistry, 2008, Vanderbilt University

 Molecular events involved in successful embryo implantation take place in defined time and space but are not generally well understood. Here for the first time,… (more)

Subjects/Keywords: Imaging Mass Spectrometry; Embryo Implantation

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APA (6th Edition):

Burnum, K. E. (2008). Detecting spatial and temporal distributions of lipids and proteins during embryo implantation by MALDI Imaging Mass Spectrometry. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/15001

Chicago Manual of Style (16th Edition):

Burnum, Kristin Elizabeth. “Detecting spatial and temporal distributions of lipids and proteins during embryo implantation by MALDI Imaging Mass Spectrometry.” 2008. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/15001.

MLA Handbook (7th Edition):

Burnum, Kristin Elizabeth. “Detecting spatial and temporal distributions of lipids and proteins during embryo implantation by MALDI Imaging Mass Spectrometry.” 2008. Web. 19 Jan 2021.

Vancouver:

Burnum KE. Detecting spatial and temporal distributions of lipids and proteins during embryo implantation by MALDI Imaging Mass Spectrometry. [Internet] [Doctoral dissertation]. Vanderbilt University; 2008. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/15001.

Council of Science Editors:

Burnum KE. Detecting spatial and temporal distributions of lipids and proteins during embryo implantation by MALDI Imaging Mass Spectrometry. [Doctoral Dissertation]. Vanderbilt University; 2008. Available from: http://hdl.handle.net/1803/15001


Vanderbilt University

12. Fenn, Larissa Spell. Detection and characterization of glycans and glycoconjugates using ion mobility-mass spectrometry.

Degree: PhD, Chemistry, 2010, Vanderbilt University

 Many of the diseases associated with glycoprotein variation can be more effectively treated with earlier detection substantiating the need for high-throughput methodologies for glycoconjugate characterization.… (more)

Subjects/Keywords: collision cross section; ion mobility; mass spectrometry; glycoproteomics; glycomics; carbohydrate

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APA (6th Edition):

Fenn, L. S. (2010). Detection and characterization of glycans and glycoconjugates using ion mobility-mass spectrometry. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/12127

Chicago Manual of Style (16th Edition):

Fenn, Larissa Spell. “Detection and characterization of glycans and glycoconjugates using ion mobility-mass spectrometry.” 2010. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/12127.

MLA Handbook (7th Edition):

Fenn, Larissa Spell. “Detection and characterization of glycans and glycoconjugates using ion mobility-mass spectrometry.” 2010. Web. 19 Jan 2021.

Vancouver:

Fenn LS. Detection and characterization of glycans and glycoconjugates using ion mobility-mass spectrometry. [Internet] [Doctoral dissertation]. Vanderbilt University; 2010. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/12127.

Council of Science Editors:

Fenn LS. Detection and characterization of glycans and glycoconjugates using ion mobility-mass spectrometry. [Doctoral Dissertation]. Vanderbilt University; 2010. Available from: http://hdl.handle.net/1803/12127


Vanderbilt University

13. Loecken, Elisabeth Mary. DNA-Protein Cross-Links Induced by Bis-Electrophiles.

Degree: PhD, Biochemistry, 2010, Vanderbilt University

 Diepoxybutane is a mutagenic and carcinogenic oxidation product of the important industrial chemical and environmental contaminant butadiene. The mutagenic potential of diepoxybutane is thought to… (more)

Subjects/Keywords: carcinogens; bis-electrophiles; DNA damage; DNA-protein cross-links

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APA (6th Edition):

Loecken, E. M. (2010). DNA-Protein Cross-Links Induced by Bis-Electrophiles. (Doctoral Dissertation). Vanderbilt University. Retrieved from http://hdl.handle.net/1803/12099

Chicago Manual of Style (16th Edition):

Loecken, Elisabeth Mary. “DNA-Protein Cross-Links Induced by Bis-Electrophiles.” 2010. Doctoral Dissertation, Vanderbilt University. Accessed January 19, 2021. http://hdl.handle.net/1803/12099.

MLA Handbook (7th Edition):

Loecken, Elisabeth Mary. “DNA-Protein Cross-Links Induced by Bis-Electrophiles.” 2010. Web. 19 Jan 2021.

Vancouver:

Loecken EM. DNA-Protein Cross-Links Induced by Bis-Electrophiles. [Internet] [Doctoral dissertation]. Vanderbilt University; 2010. [cited 2021 Jan 19]. Available from: http://hdl.handle.net/1803/12099.

Council of Science Editors:

Loecken EM. DNA-Protein Cross-Links Induced by Bis-Electrophiles. [Doctoral Dissertation]. Vanderbilt University; 2010. Available from: http://hdl.handle.net/1803/12099

.