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You searched for +publisher:"University of Illinois – Urbana-Champaign" +contributor:("Schulten, Klaus J."). Showing records 1 – 28 of 28 total matches.

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University of Illinois – Urbana-Champaign

1. Khalili Araghi, Fatemeh. Voltage-Gating Mechanism in Potassium Channels.

Degree: PhD, 0240, 2011, University of Illinois – Urbana-Champaign

 Voltage-gated potassium channels are membrane proteins that regulate the ???ow of K+ ions across the cell membrane. These channels respond to changes in electrostatic potential… (more)

Subjects/Keywords: Voltage-gating; potassium channels

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APA (6th Edition):

Khalili Araghi, F. (2011). Voltage-Gating Mechanism in Potassium Channels. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/18378

Chicago Manual of Style (16th Edition):

Khalili Araghi, Fatemeh. “Voltage-Gating Mechanism in Potassium Channels.” 2011. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/18378.

MLA Handbook (7th Edition):

Khalili Araghi, Fatemeh. “Voltage-Gating Mechanism in Potassium Channels.” 2011. Web. 01 Mar 2021.

Vancouver:

Khalili Araghi F. Voltage-Gating Mechanism in Potassium Channels. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2011. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/18378.

Council of Science Editors:

Khalili Araghi F. Voltage-Gating Mechanism in Potassium Channels. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2011. Available from: http://hdl.handle.net/2142/18378


University of Illinois – Urbana-Champaign

2. Brenner, Michael. Force manipulation and single molecule FRET of transcriptional regulatory factors.

Degree: PhD, 0335, 2013, University of Illinois – Urbana-Champaign

 Mechanical tension plays a large role in cell development ranging from morphology to gene expression. On the molecular level, the effects of tension can be… (more)

Subjects/Keywords: transcription; single-molecule; optical tweezers; Förster Resonance Energy Transfer (FRET); biophysics

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APA (6th Edition):

Brenner, M. (2013). Force manipulation and single molecule FRET of transcriptional regulatory factors. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/42145

Chicago Manual of Style (16th Edition):

Brenner, Michael. “Force manipulation and single molecule FRET of transcriptional regulatory factors.” 2013. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/42145.

MLA Handbook (7th Edition):

Brenner, Michael. “Force manipulation and single molecule FRET of transcriptional regulatory factors.” 2013. Web. 01 Mar 2021.

Vancouver:

Brenner M. Force manipulation and single molecule FRET of transcriptional regulatory factors. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2013. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/42145.

Council of Science Editors:

Brenner M. Force manipulation and single molecule FRET of transcriptional regulatory factors. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2013. Available from: http://hdl.handle.net/2142/42145


University of Illinois – Urbana-Champaign

3. Enkavi, Giray. Mechanism and energetics of membrane transporters and channels.

Degree: PhD, 0319, 2014, University of Illinois – Urbana-Champaign

 Living cells have evolved specialized transport proteins called membrane transporters and channels that catalyze exchange of materials across the cell membrane. Membrane trans- porters couple… (more)

Subjects/Keywords: membrane transporters; membrane channels; major facilitator superfamily; antiporter; urea; aquaporin

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APA (6th Edition):

Enkavi, G. (2014). Mechanism and energetics of membrane transporters and channels. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/46912

Chicago Manual of Style (16th Edition):

Enkavi, Giray. “Mechanism and energetics of membrane transporters and channels.” 2014. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/46912.

MLA Handbook (7th Edition):

Enkavi, Giray. “Mechanism and energetics of membrane transporters and channels.” 2014. Web. 01 Mar 2021.

Vancouver:

Enkavi G. Mechanism and energetics of membrane transporters and channels. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2014. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/46912.

Council of Science Editors:

Enkavi G. Mechanism and energetics of membrane transporters and channels. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2014. Available from: http://hdl.handle.net/2142/46912


University of Illinois – Urbana-Champaign

4. Girdhar, Anuj. Quantum transport in graphene nanotransistors.

Degree: PhD, Physics, 2015, University of Illinois – Urbana-Champaign

 Over the past decade, interest in using graphene in condensed-matter physics and materials science applications has exploded, owing to its unique electrical properties. Narrow strips… (more)

Subjects/Keywords: graphene; quantum; transport; nanoribbon; Deoxyribonucleic Acid (DNA); sequencing; transistor; nanopore; sensing; genome; monolayer; gate

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APA (6th Edition):

Girdhar, A. (2015). Quantum transport in graphene nanotransistors. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/78634

Chicago Manual of Style (16th Edition):

Girdhar, Anuj. “Quantum transport in graphene nanotransistors.” 2015. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/78634.

MLA Handbook (7th Edition):

Girdhar, Anuj. “Quantum transport in graphene nanotransistors.” 2015. Web. 01 Mar 2021.

Vancouver:

Girdhar A. Quantum transport in graphene nanotransistors. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2015. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/78634.

Council of Science Editors:

Girdhar A. Quantum transport in graphene nanotransistors. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2015. Available from: http://hdl.handle.net/2142/78634


University of Illinois – Urbana-Champaign

5. Yu, Jitong. Some effects of dimensionality and defects on superconductivity.

Degree: PhD, Physics, 2015, University of Illinois – Urbana-Champaign

 This thesis reports some theoretical studies of superconductivity with reduced dimensions. After an intro- duction to the physics of superconductivity with reduced dimensions, we reports… (more)

Subjects/Keywords: superconductor; superconducting; dimensionality; defect; nanowire; Langer–Ambegaokar–McCumber–Halperin (LAMH); resistance; planar defects; Sr2RuO4; vortex pinning; critical current

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APA (6th Edition):

Yu, J. (2015). Some effects of dimensionality and defects on superconductivity. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/87980

Chicago Manual of Style (16th Edition):

Yu, Jitong. “Some effects of dimensionality and defects on superconductivity.” 2015. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/87980.

MLA Handbook (7th Edition):

Yu, Jitong. “Some effects of dimensionality and defects on superconductivity.” 2015. Web. 01 Mar 2021.

Vancouver:

Yu J. Some effects of dimensionality and defects on superconductivity. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2015. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/87980.

Council of Science Editors:

Yu J. Some effects of dimensionality and defects on superconductivity. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2015. Available from: http://hdl.handle.net/2142/87980


University of Illinois – Urbana-Champaign

6. Li, Jing. Molecular insights into alternating access mechanism of secondary active transporters from molecular dynamics simulations.

Degree: PhD, 0319, 2014, University of Illinois – Urbana-Champaign

 Membrane transporters are specialized molecular machinery for selective, regulable, efficient, and more importantly, active transport of diverse chemical species, e.g., nutrients, reaction precursors and products,… (more)

Subjects/Keywords: Secondary active transporter; Alternating access mechanism; Molecular dynamics simulations; Ion-coupling mechanism; Water-conducting state; Ion release; Substrate release; LeuT-fold transporters

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APA (6th Edition):

Li, J. (2014). Molecular insights into alternating access mechanism of secondary active transporters from molecular dynamics simulations. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/49738

Chicago Manual of Style (16th Edition):

Li, Jing. “Molecular insights into alternating access mechanism of secondary active transporters from molecular dynamics simulations.” 2014. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/49738.

MLA Handbook (7th Edition):

Li, Jing. “Molecular insights into alternating access mechanism of secondary active transporters from molecular dynamics simulations.” 2014. Web. 01 Mar 2021.

Vancouver:

Li J. Molecular insights into alternating access mechanism of secondary active transporters from molecular dynamics simulations. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2014. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/49738.

Council of Science Editors:

Li J. Molecular insights into alternating access mechanism of secondary active transporters from molecular dynamics simulations. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2014. Available from: http://hdl.handle.net/2142/49738


University of Illinois – Urbana-Champaign

7. Chen, Ke. Evolution and assembly of the ribosome.

Degree: PhD, 0319, 2014, University of Illinois – Urbana-Champaign

 The ribosome is a large macromolecular assembly responsible for protein synthesis in all living cells. A typical bacterial ribosome consists of three ribosomal RNA (rRNA)… (more)

Subjects/Keywords: the RNA world; last universal common ancestor (LUCA); ribosomal evolution; ribosomal signature; ribosomal assembly; ribosomal RNA (rRNA); r-proteins; r-protein S4; RNA folding; protein binding; ligand binding; fly-casting mechanism; single-molecule Förster resonance energy transfer (smFRET); selective 20-hydroxyl acylation analyzed by primer extension (SHAPE); footprinting; molecular dynamics simulation; structure-based Go potential; micro-second simulation

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APA (6th Edition):

Chen, K. (2014). Evolution and assembly of the ribosome. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/46886

Chicago Manual of Style (16th Edition):

Chen, Ke. “Evolution and assembly of the ribosome.” 2014. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/46886.

MLA Handbook (7th Edition):

Chen, Ke. “Evolution and assembly of the ribosome.” 2014. Web. 01 Mar 2021.

Vancouver:

Chen K. Evolution and assembly of the ribosome. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2014. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/46886.

Council of Science Editors:

Chen K. Evolution and assembly of the ribosome. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2014. Available from: http://hdl.handle.net/2142/46886


University of Illinois – Urbana-Champaign

8. Mathew, Damien C. Computational studies of origins of life scenarios.

Degree: PhD, 0319, 2011, University of Illinois – Urbana-Champaign

 Understanding the origins of life on Earth is one of the most intriguing problems facing science today. In the research presented here, we apply computational… (more)

Subjects/Keywords: origins of life; evolution; molecular dynamics; genetic code

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APA (6th Edition):

Mathew, D. C. (2011). Computational studies of origins of life scenarios. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/18307

Chicago Manual of Style (16th Edition):

Mathew, Damien C. “Computational studies of origins of life scenarios.” 2011. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/18307.

MLA Handbook (7th Edition):

Mathew, Damien C. “Computational studies of origins of life scenarios.” 2011. Web. 01 Mar 2021.

Vancouver:

Mathew DC. Computational studies of origins of life scenarios. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2011. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/18307.

Council of Science Editors:

Mathew DC. Computational studies of origins of life scenarios. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2011. Available from: http://hdl.handle.net/2142/18307


University of Illinois – Urbana-Champaign

9. Latinwo, Folarin. Fluctuation theorems and work relations for single polymer rheology.

Degree: PhD, 0300, 2014, University of Illinois – Urbana-Champaign

 Synthetic and biological polymeric materials are ubiquitous in nature and modern technology. The emergent properties afforded by these materials allows for wide a array of… (more)

Subjects/Keywords: Thermodynamics; Rheology; Work Relations; Polymers

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APA (6th Edition):

Latinwo, F. (2014). Fluctuation theorems and work relations for single polymer rheology. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/49677

Chicago Manual of Style (16th Edition):

Latinwo, Folarin. “Fluctuation theorems and work relations for single polymer rheology.” 2014. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/49677.

MLA Handbook (7th Edition):

Latinwo, Folarin. “Fluctuation theorems and work relations for single polymer rheology.” 2014. Web. 01 Mar 2021.

Vancouver:

Latinwo F. Fluctuation theorems and work relations for single polymer rheology. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2014. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/49677.

Council of Science Editors:

Latinwo F. Fluctuation theorems and work relations for single polymer rheology. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2014. Available from: http://hdl.handle.net/2142/49677


University of Illinois – Urbana-Champaign

10. Comellas Canal, Gemma. Structure, conformational dynamics and formation of large amyloids: the case of alpha-synuclein fibrils.

Degree: PhD, 0319, 2012, University of Illinois – Urbana-Champaign

 In my thesis, I have focused on new methodology development combined with state-of-the-art solid-state nuclear magnetic resonance (NMR) experiments with scanning transmission electron microscopy (STEM)… (more)

Subjects/Keywords: Nuclear magnetic resonance (NMR); magic-angle spinning (MAS); protein structure; alpha-synuclein (AS)

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APA (6th Edition):

Comellas Canal, G. (2012). Structure, conformational dynamics and formation of large amyloids: the case of alpha-synuclein fibrils. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/31996

Chicago Manual of Style (16th Edition):

Comellas Canal, Gemma. “Structure, conformational dynamics and formation of large amyloids: the case of alpha-synuclein fibrils.” 2012. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/31996.

MLA Handbook (7th Edition):

Comellas Canal, Gemma. “Structure, conformational dynamics and formation of large amyloids: the case of alpha-synuclein fibrils.” 2012. Web. 01 Mar 2021.

Vancouver:

Comellas Canal G. Structure, conformational dynamics and formation of large amyloids: the case of alpha-synuclein fibrils. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2012. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/31996.

Council of Science Editors:

Comellas Canal G. Structure, conformational dynamics and formation of large amyloids: the case of alpha-synuclein fibrils. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2012. Available from: http://hdl.handle.net/2142/31996


University of Illinois – Urbana-Champaign

11. Sanghi, Tarun. Multiscale models for structure and dynamics of confined fluids.

Degree: PhD, Mechanical Engineering, 2016, University of Illinois – Urbana-Champaign

 In this dissertation, using systematic coarse-graining, we develop multiscale models to study structural and dynamical properties of confined fluids. With the advent of nanofluidics and… (more)

Subjects/Keywords: Multiscale modes; Structure and Dynamics of Confined fluids; Generalized Langevin Equation; Thermal noise; Empirical potential based Quasi-continuum Theory (EQT)

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APA (6th Edition):

Sanghi, T. (2016). Multiscale models for structure and dynamics of confined fluids. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/92711

Chicago Manual of Style (16th Edition):

Sanghi, Tarun. “Multiscale models for structure and dynamics of confined fluids.” 2016. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/92711.

MLA Handbook (7th Edition):

Sanghi, Tarun. “Multiscale models for structure and dynamics of confined fluids.” 2016. Web. 01 Mar 2021.

Vancouver:

Sanghi T. Multiscale models for structure and dynamics of confined fluids. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2016. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/92711.

Council of Science Editors:

Sanghi T. Multiscale models for structure and dynamics of confined fluids. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2016. Available from: http://hdl.handle.net/2142/92711

12. Gamini, Ramya Bhargavi. Molecular mechanisms of gating and selectivity in transport channels.

Degree: PhD, 0319, 2013, University of Illinois – Urbana-Champaign

 Transport channels and pores are of fundamental importance for translocation of molecules across the otherwise-impermeable biological membrane. As a conduit for the passage of material,… (more)

Subjects/Keywords: Transport Channels; Molecular Dynamics; nuclear pore complex; mechanosensitive channel of small conductance

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APA (6th Edition):

Gamini, R. B. (2013). Molecular mechanisms of gating and selectivity in transport channels. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/45293

Chicago Manual of Style (16th Edition):

Gamini, Ramya Bhargavi. “Molecular mechanisms of gating and selectivity in transport channels.” 2013. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/45293.

MLA Handbook (7th Edition):

Gamini, Ramya Bhargavi. “Molecular mechanisms of gating and selectivity in transport channels.” 2013. Web. 01 Mar 2021.

Vancouver:

Gamini RB. Molecular mechanisms of gating and selectivity in transport channels. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2013. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/45293.

Council of Science Editors:

Gamini RB. Molecular mechanisms of gating and selectivity in transport channels. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2013. Available from: http://hdl.handle.net/2142/45293

13. Chandler, Danielle. Computational investigations into two biological processes: membrane reshaping by light-harvesting proteins in the chromatophores of purple bacteria, and oligomerization and pore formation by the Hepatitis C viroporin p7.

Degree: PhD, 0240, 2012, University of Illinois – Urbana-Champaign

 This dissertation presents research on two different biological systems: (1) the light-harvesting proteins in the chromatophores of purple photosynthetic bacteria, and (2) the structure and… (more)

Subjects/Keywords: photosynthetic bacteria; chromatophore; light-harvesting complexes; LH2; membrane curvature; Hepatitis C; Hepatitis C virus (HCV); viroporin; p7

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APA (6th Edition):

Chandler, D. (2012). Computational investigations into two biological processes: membrane reshaping by light-harvesting proteins in the chromatophores of purple bacteria, and oligomerization and pore formation by the Hepatitis C viroporin p7. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/29569

Chicago Manual of Style (16th Edition):

Chandler, Danielle. “Computational investigations into two biological processes: membrane reshaping by light-harvesting proteins in the chromatophores of purple bacteria, and oligomerization and pore formation by the Hepatitis C viroporin p7.” 2012. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/29569.

MLA Handbook (7th Edition):

Chandler, Danielle. “Computational investigations into two biological processes: membrane reshaping by light-harvesting proteins in the chromatophores of purple bacteria, and oligomerization and pore formation by the Hepatitis C viroporin p7.” 2012. Web. 01 Mar 2021.

Vancouver:

Chandler D. Computational investigations into two biological processes: membrane reshaping by light-harvesting proteins in the chromatophores of purple bacteria, and oligomerization and pore formation by the Hepatitis C viroporin p7. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2012. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/29569.

Council of Science Editors:

Chandler D. Computational investigations into two biological processes: membrane reshaping by light-harvesting proteins in the chromatophores of purple bacteria, and oligomerization and pore formation by the Hepatitis C viroporin p7. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2012. Available from: http://hdl.handle.net/2142/29569

14. Chan, Kwok Yan. Structural analyses of the ribosome by hybrid approach.

Degree: PhD, 0240, 2014, University of Illinois – Urbana-Champaign

 The ribosome is the molecular machine which reads and translates genetic information into proteins in all living cells. Lack of an atomic-resolution structure of the… (more)

Subjects/Keywords: ribosome; molecular dynamics flexible fitting; cryo-electron microscopy; Tet(O); tetracycline; trigger factor; chaperone

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APA (6th Edition):

Chan, K. Y. (2014). Structural analyses of the ribosome by hybrid approach. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/50422

Chicago Manual of Style (16th Edition):

Chan, Kwok Yan. “Structural analyses of the ribosome by hybrid approach.” 2014. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/50422.

MLA Handbook (7th Edition):

Chan, Kwok Yan. “Structural analyses of the ribosome by hybrid approach.” 2014. Web. 01 Mar 2021.

Vancouver:

Chan KY. Structural analyses of the ribosome by hybrid approach. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2014. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/50422.

Council of Science Editors:

Chan KY. Structural analyses of the ribosome by hybrid approach. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2014. Available from: http://hdl.handle.net/2142/50422

15. Hsin, Ya-chieh. Computational investigations of cellular functions: Three cases on membrane morphogenesis, organization and assembly of a multi-protein complex, and the molecular origin of muscle elasticity.

Degree: PhD, 0240, 2010, University of Illinois – Urbana-Champaign

 In this article, three biological inquiries on cellular functions investigated through a combination of theoretical and computational methods are discussed: the morphology of the biological… (more)

Subjects/Keywords: molecular dynamics; steered molecular dynamics; photosynthesis; membrane curvature; protein-induced membrane curvature; molecular modeling; protein complex assembly; muscle elasticity; titin; mechanical protein; elastic protein

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APA (6th Edition):

Hsin, Y. (2010). Computational investigations of cellular functions: Three cases on membrane morphogenesis, organization and assembly of a multi-protein complex, and the molecular origin of muscle elasticity. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/16835

Chicago Manual of Style (16th Edition):

Hsin, Ya-chieh. “Computational investigations of cellular functions: Three cases on membrane morphogenesis, organization and assembly of a multi-protein complex, and the molecular origin of muscle elasticity.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/16835.

MLA Handbook (7th Edition):

Hsin, Ya-chieh. “Computational investigations of cellular functions: Three cases on membrane morphogenesis, organization and assembly of a multi-protein complex, and the molecular origin of muscle elasticity.” 2010. Web. 01 Mar 2021.

Vancouver:

Hsin Y. Computational investigations of cellular functions: Three cases on membrane morphogenesis, organization and assembly of a multi-protein complex, and the molecular origin of muscle elasticity. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/16835.

Council of Science Editors:

Hsin Y. Computational investigations of cellular functions: Three cases on membrane morphogenesis, organization and assembly of a multi-protein complex, and the molecular origin of muscle elasticity. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/16835

16. Liu, Yanxin. Computational investigations of protein dynamics and its implications for biological functions.

Degree: PhD, 0240, 2013, University of Illinois – Urbana-Champaign

 Computer simulation is a powerful approach to study protein dynamics and functions. We employed molecular dynamics (MD) simulations to investigate large conformational changes in proteins,… (more)

Subjects/Keywords: molecular dynamics simulation; protein folding; enhanced sampling; lambda-repressor; glycoprotein; flow-induced protein folding; myosin VI; motor protein

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APA (6th Edition):

Liu, Y. (2013). Computational investigations of protein dynamics and its implications for biological functions. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/45294

Chicago Manual of Style (16th Edition):

Liu, Yanxin. “Computational investigations of protein dynamics and its implications for biological functions.” 2013. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/45294.

MLA Handbook (7th Edition):

Liu, Yanxin. “Computational investigations of protein dynamics and its implications for biological functions.” 2013. Web. 01 Mar 2021.

Vancouver:

Liu Y. Computational investigations of protein dynamics and its implications for biological functions. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2013. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/45294.

Council of Science Editors:

Liu Y. Computational investigations of protein dynamics and its implications for biological functions. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2013. Available from: http://hdl.handle.net/2142/45294

17. Tanner, David. Lengthening the timescale reach of molecular dynamics.

Degree: PhD, 0319, 2012, University of Illinois – Urbana-Champaign

 Molecular dynamics (MD) is a computational method employed for studying the dynamics of nanoscale biological systems on nanosecond to microsecond timescales. Using MD, researchers can… (more)

Subjects/Keywords: molecular dynamics; implicit solvent; Graphics Processing Units (GPU); High Performance Computing (HPC); flagellum; protein translocation

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APA (6th Edition):

Tanner, D. (2012). Lengthening the timescale reach of molecular dynamics. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/31144

Chicago Manual of Style (16th Edition):

Tanner, David. “Lengthening the timescale reach of molecular dynamics.” 2012. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/31144.

MLA Handbook (7th Edition):

Tanner, David. “Lengthening the timescale reach of molecular dynamics.” 2012. Web. 01 Mar 2021.

Vancouver:

Tanner D. Lengthening the timescale reach of molecular dynamics. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2012. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/31144.

Council of Science Editors:

Tanner D. Lengthening the timescale reach of molecular dynamics. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2012. Available from: http://hdl.handle.net/2142/31144

18. Strumpfer, Johan. Computational investigation of light harvesting in purple photosynthetic bacteria.

Degree: PhD, 0319, 2012, University of Illinois – Urbana-Champaign

 Purple photosynthetic bacteria achieve remarkably high light harvesting efficiency, thus reconciling multiple competing processes in the chromatophore. The first step in photosynthesis is the capture… (more)

Subjects/Keywords: Photosynthesis; Purple Bacteria; Excitation transfer; open quantum dynamics; hierarchy equations of motion; quantum coherence

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APA (6th Edition):

Strumpfer, J. (2012). Computational investigation of light harvesting in purple photosynthetic bacteria. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/34275

Chicago Manual of Style (16th Edition):

Strumpfer, Johan. “Computational investigation of light harvesting in purple photosynthetic bacteria.” 2012. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/34275.

MLA Handbook (7th Edition):

Strumpfer, Johan. “Computational investigation of light harvesting in purple photosynthetic bacteria.” 2012. Web. 01 Mar 2021.

Vancouver:

Strumpfer J. Computational investigation of light harvesting in purple photosynthetic bacteria. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2012. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/34275.

Council of Science Editors:

Strumpfer J. Computational investigation of light harvesting in purple photosynthetic bacteria. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2012. Available from: http://hdl.handle.net/2142/34275

19. Nieuwkoop, Andrew. Structure determination of proteins and protein aggregates by magic-angle spinning solid-state NMR.

Degree: PhD, 0335, 2012, University of Illinois – Urbana-Champaign

 Solid state NMR (SSNMR) is a structure determination technique uniquely suited to study protein aggregates and fibrils. Unlike solution NMR or X-ray crystallography, SSNMR can… (more)

Subjects/Keywords: Solid-state NMR; protein structure determination; fibrils; GB1; alpha synuclein; Parkinson’s disease; TEDOR; proton detection; nuclear magnetic resonance (NMR)

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APA (6th Edition):

Nieuwkoop, A. (2012). Structure determination of proteins and protein aggregates by magic-angle spinning solid-state NMR. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/29544

Chicago Manual of Style (16th Edition):

Nieuwkoop, Andrew. “Structure determination of proteins and protein aggregates by magic-angle spinning solid-state NMR.” 2012. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/29544.

MLA Handbook (7th Edition):

Nieuwkoop, Andrew. “Structure determination of proteins and protein aggregates by magic-angle spinning solid-state NMR.” 2012. Web. 01 Mar 2021.

Vancouver:

Nieuwkoop A. Structure determination of proteins and protein aggregates by magic-angle spinning solid-state NMR. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2012. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/29544.

Council of Science Editors:

Nieuwkoop A. Structure determination of proteins and protein aggregates by magic-angle spinning solid-state NMR. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2012. Available from: http://hdl.handle.net/2142/29544

20. Mears, Patrick. Illuminating the relationship between flagellar activity and bacterial swimming.

Degree: PhD, 0240, 2014, University of Illinois – Urbana-Champaign

 Bacterial swimming and chemotaxis serves as a model system for understanding information processing in living organisms. My thesis project was focused on studying the swimming… (more)

Subjects/Keywords: Escherichia coli; biophysics; optical tweezers; chemotaxis; fluoresence imaging; systems biology

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APA (6th Edition):

Mears, P. (2014). Illuminating the relationship between flagellar activity and bacterial swimming. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/49486

Chicago Manual of Style (16th Edition):

Mears, Patrick. “Illuminating the relationship between flagellar activity and bacterial swimming.” 2014. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/49486.

MLA Handbook (7th Edition):

Mears, Patrick. “Illuminating the relationship between flagellar activity and bacterial swimming.” 2014. Web. 01 Mar 2021.

Vancouver:

Mears P. Illuminating the relationship between flagellar activity and bacterial swimming. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2014. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/49486.

Council of Science Editors:

Mears P. Illuminating the relationship between flagellar activity and bacterial swimming. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2014. Available from: http://hdl.handle.net/2142/49486

21. Sathe, Chaitanya. Computational study of graphene nanopore sensor for DNA sensing.

Degree: PhD, 1200, 2015, University of Illinois – Urbana-Champaign

 Inexpensive and fast methods to sequence the genome of individuals using nanopore technology can lead to tremendous advancement in the eld of modern medicine. The… (more)

Subjects/Keywords: Nanopore; DNA Sequencing; Molecular Dynamics; Graphene; Electron Transport

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APA (6th Edition):

Sathe, C. (2015). Computational study of graphene nanopore sensor for DNA sensing. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/72941

Chicago Manual of Style (16th Edition):

Sathe, Chaitanya. “Computational study of graphene nanopore sensor for DNA sensing.” 2015. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/72941.

MLA Handbook (7th Edition):

Sathe, Chaitanya. “Computational study of graphene nanopore sensor for DNA sensing.” 2015. Web. 01 Mar 2021.

Vancouver:

Sathe C. Computational study of graphene nanopore sensor for DNA sensing. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2015. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/72941.

Council of Science Editors:

Sathe C. Computational study of graphene nanopore sensor for DNA sensing. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2015. Available from: http://hdl.handle.net/2142/72941


University of Illinois – Urbana-Champaign

22. Miao, Lingling. Selective transport of the nuclear pore complex studied through all-atom and coarse-grained molecular dynamics simulations.

Degree: PhD, 0240, 2010, University of Illinois – Urbana-Champaign

 As the only pathways connecting the cell???s nucleus and cytoplasm, nuclear pore complexes (NPCs) enable and control the import and export between cell???s cytoplasm and… (more)

Subjects/Keywords: Nuclear pore complex; NPC selective transport; FG-nups; FG-repeats; Transport receptors; Molecular dynamics; MD simulations

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APA (6th Edition):

Miao, L. (2010). Selective transport of the nuclear pore complex studied through all-atom and coarse-grained molecular dynamics simulations. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/14747

Chicago Manual of Style (16th Edition):

Miao, Lingling. “Selective transport of the nuclear pore complex studied through all-atom and coarse-grained molecular dynamics simulations.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/14747.

MLA Handbook (7th Edition):

Miao, Lingling. “Selective transport of the nuclear pore complex studied through all-atom and coarse-grained molecular dynamics simulations.” 2010. Web. 01 Mar 2021.

Vancouver:

Miao L. Selective transport of the nuclear pore complex studied through all-atom and coarse-grained molecular dynamics simulations. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/14747.

Council of Science Editors:

Miao L. Selective transport of the nuclear pore complex studied through all-atom and coarse-grained molecular dynamics simulations. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/14747


University of Illinois – Urbana-Champaign

23. Cruz, Eduardo. Transport properties of synthetic nanopores.

Degree: PhD, 0319, 2010, University of Illinois – Urbana-Champaign

 In recent years, advances in nanotechnology have allowed researchers to manufacture pores in synthetic membranes with subnanometer precision, so-called synthetic nanopores. Immersed in aqueous solution,… (more)

Subjects/Keywords: synthetic nanopore; molecular dynamics simulations; ionic rectification; nanoprecipitation; water contact angle; amorphous silica; polyethylene terephthalate

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APA (6th Edition):

Cruz, E. (2010). Transport properties of synthetic nanopores. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/15530

Chicago Manual of Style (16th Edition):

Cruz, Eduardo. “Transport properties of synthetic nanopores.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/15530.

MLA Handbook (7th Edition):

Cruz, Eduardo. “Transport properties of synthetic nanopores.” 2010. Web. 01 Mar 2021.

Vancouver:

Cruz E. Transport properties of synthetic nanopores. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/15530.

Council of Science Editors:

Cruz E. Transport properties of synthetic nanopores. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/15530


University of Illinois – Urbana-Champaign

24. Trabuco, Leonardo G. Investigating the mechanisms of protein synthesis using multi-resolution structural data.

Degree: PhD, 0319, 2010, University of Illinois – Urbana-Champaign

 The ribosome is a complex, dynamic molecular machine responsible for protein synthesis in all cells according to the genetic information. Recent breakthroughs in ribosome crystallography… (more)

Subjects/Keywords: ribosome; molecular dynamics flexible fitting; Cryo-electron microscopy (cryo-EM); Elongation factor Tu (EF-Tu); SecY; TnaC; L1 stalk

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APA (6th Edition):

Trabuco, L. G. (2010). Investigating the mechanisms of protein synthesis using multi-resolution structural data. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/16525

Chicago Manual of Style (16th Edition):

Trabuco, Leonardo G. “Investigating the mechanisms of protein synthesis using multi-resolution structural data.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/16525.

MLA Handbook (7th Edition):

Trabuco, Leonardo G. “Investigating the mechanisms of protein synthesis using multi-resolution structural data.” 2010. Web. 01 Mar 2021.

Vancouver:

Trabuco LG. Investigating the mechanisms of protein synthesis using multi-resolution structural data. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/16525.

Council of Science Editors:

Trabuco LG. Investigating the mechanisms of protein synthesis using multi-resolution structural data. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/16525


University of Illinois – Urbana-Champaign

25. Yung, Man Hong. Physical challenges of quantum computation.

Degree: PhD, 0240, 2010, University of Illinois – Urbana-Champaign

 This is a study of several physical challenges for building a quantum computer, a hypothetical device which is capable of accomplishing tasks unachievable by the… (more)

Subjects/Keywords: quantum computation; quantum information; decoherence; quantum state transfer; error correlation; adiabatic quantum computing; quantum simulation

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APA (6th Edition):

Yung, M. H. (2010). Physical challenges of quantum computation. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/14565

Chicago Manual of Style (16th Edition):

Yung, Man Hong. “Physical challenges of quantum computation.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/14565.

MLA Handbook (7th Edition):

Yung, Man Hong. “Physical challenges of quantum computation.” 2010. Web. 01 Mar 2021.

Vancouver:

Yung MH. Physical challenges of quantum computation. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/14565.

Council of Science Editors:

Yung MH. Physical challenges of quantum computation. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/14565


University of Illinois – Urbana-Champaign

26. Rajan, Aruna. Analysis of Molecular Dynamics Simulations of Protein Folding.

Degree: PhD, 0240, 2010, University of Illinois – Urbana-Champaign

 Microsecond long Molecular Dynamics (MD) trajectories of biomolecular processes are now possible due to advances in computer technology. Soon, trajectories long enough to probe dynamics… (more)

Subjects/Keywords: protein folding; molecular dynamics simulations; non-metric multidimensional scaling; principal component analysis; clustering; villin headpiece; norleucine mutant

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APA (6th Edition):

Rajan, A. (2010). Analysis of Molecular Dynamics Simulations of Protein Folding. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/14582

Chicago Manual of Style (16th Edition):

Rajan, Aruna. “Analysis of Molecular Dynamics Simulations of Protein Folding.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/14582.

MLA Handbook (7th Edition):

Rajan, Aruna. “Analysis of Molecular Dynamics Simulations of Protein Folding.” 2010. Web. 01 Mar 2021.

Vancouver:

Rajan A. Analysis of Molecular Dynamics Simulations of Protein Folding. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/14582.

Council of Science Editors:

Rajan A. Analysis of Molecular Dynamics Simulations of Protein Folding. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/14582


University of Illinois – Urbana-Champaign

27. Eargle, John. Simulation and visualization of dynamics in RNA-protein complexes in translation.

Degree: PhD, 0319, 2010, University of Illinois – Urbana-Champaign

 Translation, the process of reading genetic information and synthesizing the corresponding proteins, is universal and found throughout the three domains of life. The flow of… (more)

Subjects/Keywords: translation; elongation factor Tu; tRNA; aminoacyl-tRNA synthetase

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APA (6th Edition):

Eargle, J. (2010). Simulation and visualization of dynamics in RNA-protein complexes in translation. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/15521

Chicago Manual of Style (16th Edition):

Eargle, John. “Simulation and visualization of dynamics in RNA-protein complexes in translation.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/15521.

MLA Handbook (7th Edition):

Eargle, John. “Simulation and visualization of dynamics in RNA-protein complexes in translation.” 2010. Web. 01 Mar 2021.

Vancouver:

Eargle J. Simulation and visualization of dynamics in RNA-protein complexes in translation. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/15521.

Council of Science Editors:

Eargle J. Simulation and visualization of dynamics in RNA-protein complexes in translation. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/15521


University of Illinois – Urbana-Champaign

28. Comer, Jeffrey R. Nanopore technology for DNA sequencing.

Degree: PhD, 0240, 2010, University of Illinois – Urbana-Champaign

 The pursuit of inexpensive DNA sequencing lies at the interface between nanotechnology and biotechnology???where silicon nanopores, nanoscale electrodes, and self-assembled molecular structures are as common… (more)

Subjects/Keywords: molecular dynamics; sequencing; DNA sequencing; nanopore; nanopore sequencing; bionanotechnology; computer simulations; force spectroscopy; nucleic acids; transmembrane transport; Brownian dynamics

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APA (6th Edition):

Comer, J. R. (2010). Nanopore technology for DNA sequencing. (Doctoral Dissertation). University of Illinois – Urbana-Champaign. Retrieved from http://hdl.handle.net/2142/16812

Chicago Manual of Style (16th Edition):

Comer, Jeffrey R. “Nanopore technology for DNA sequencing.” 2010. Doctoral Dissertation, University of Illinois – Urbana-Champaign. Accessed March 01, 2021. http://hdl.handle.net/2142/16812.

MLA Handbook (7th Edition):

Comer, Jeffrey R. “Nanopore technology for DNA sequencing.” 2010. Web. 01 Mar 2021.

Vancouver:

Comer JR. Nanopore technology for DNA sequencing. [Internet] [Doctoral dissertation]. University of Illinois – Urbana-Champaign; 2010. [cited 2021 Mar 01]. Available from: http://hdl.handle.net/2142/16812.

Council of Science Editors:

Comer JR. Nanopore technology for DNA sequencing. [Doctoral Dissertation]. University of Illinois – Urbana-Champaign; 2010. Available from: http://hdl.handle.net/2142/16812

.